Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen09g012960 Solanum pennellii HOM05D005211 ORTHO05D006148 2.0e-42 175.6 106 100.0
Solyc12g042010.1 Solanum lycopersicum HOM05D005211 ORTHO05D006148 5.4e-40 167.5 106 97.2
PGSC0003DMG400005560 Solanum tuberosum HOM05D005211 ORTHO05D006148 8.0e-36 153.7 107 77.6
Cc01_g16110 Coffea canephora HOM05D005211 ORTHO05D006148 1.4e-19 99.8 109 53.2
Nn1g08305 Nelumbo nucifera HOM05D005211 ORTHO05D006148 1.1e-16 90.1 109 47.7
Lj1P101T27 Lonicera japonica HOM05D005211 ORTHO05D006148 1.4e-16 89.7 106 50.9
Sc17g0001650 Simmondsia chinensis HOM05D005211 ORTHO05D006148 4.1e-16 88.2 101 50.5
TAR633G2277 Trochodendron aralioides HOM05D005211 ORTHO05D006148 5.4e-16 87.8 111 46.8
DCAR_004769 Daucus carota HOM05D005211 ORTHO05D006148 1.3e-14 83.2 100 50.0
MD05G1158800 Malus domestica HOM05D005211 ORTHO05D006148 1.3e-14 83.2 104 45.2
CSS0012153 Camellia sinensis var. sinensis HOM05D005211 ORTHO05D006148 3.0e-14 82.0 107 50.5
CSS0028586 Camellia sinensis var. sinensis HOM05D005211 ORTHO05D006148 3.0e-14 82.0 107 50.5
Lj2P1117T13 Lonicera japonica HOM05D005211 ORTHO05D006148 3.0e-14 82.0 113 44.2
Nitab4.5_0004516g0010 Nicotiana tabacum HOM05D005211 ORTHO05D006148 3.0e-14 82.0 79 59.5
MBI07_g35368_MAGBIO Magnolia biondii HOM05D005211 ORTHO05D006148 3.9e-14 81.6 107 46.7
Peaxi162Scf00335g00067 Petunia axillaris HOM05D005211 ORTHO05D006148 3.9e-14 81.6 84 57.1
TAR636G0814 Trochodendron aralioides HOM05D005211 ORTHO05D006148 5.1e-14 81.3 113 44.2
Sed0015684 Sechium edule HOM05D005211 ORTHO05D006148 8.6e-14 80.5 103 43.7
EL10Ac5g10623 Beta vulgaris HOM05D005211 ORTHO05D006148 1.1e-13 80.1 137 39.4
QL10p044103 Quercus lobata HOM05D005211 ORTHO05D006148 1.1e-13 80.1 111 40.5
CiPaw.13G055500 Carya illinoinensis HOM05D005211 ORTHO05D006148 1.9e-13 79.3 114 45.6
Prupe.8G190100 Prunus persica HOM05D005211 ORTHO05D006148 1.9e-13 79.3 114 40.4
MELO3C026134.2 Cucumis melo HOM05D005211 ORTHO05D006148 3.3e-13 78.6 100 44.0
Oeu057829.1 Olea europaea HOM05D005211 ORTHO05D006148 3.3e-13 78.6 108 44.4
Manes.11G114000 Manihot esculenta HOM05D005211 ORTHO05D006148 5.6e-13 77.8 113 39.8
TAR365G0119 Trochodendron aralioides HOM05D005211 ORTHO05D006148 5.6e-13 77.8 117 41.9
FAN15G0641 Fragaria x ananassa HOM05D005211 ORTHO05D006148 7.3e-13 77.4 111 44.1
MD10G1151700 Malus domestica HOM05D005211 ORTHO05D006148 7.3e-13 77.4 103 42.7
FAN24G3081 Fragaria x ananassa HOM05D005211 ORTHO05D006148 1.2e-12 76.6 112 43.8
Oeu003658.1 Olea europaea HOM05D005211 ORTHO05D006148 1.2e-12 76.6 109 45.0
ClCG08G003780 Citrullus lanatus HOM05D005211 ORTHO05D006148 1.6e-12 76.3 102 43.1
FvH4_2g17750 Fragaria vesca HOM05D005211 ORTHO05D006148 1.6e-12 76.3 112 43.8
FAN27G1389 Fragaria x ananassa HOM05D005211 ORTHO05D006148 2.8e-12 75.5 111 43.2
Cfa008551 Carpinus fangiana HOM05D005211 ORTHO05D006148 3.6e-12 75.1 113 39.8
Hma1.2p1_0412F.1_g147140 Hydrangea macrophylla HOM05D005211 ORTHO05D006148 3.6e-12 75.1 105 43.8
Aqoxy2G03955 Aquilegia oxysepala HOM05D005211 ORTHO05D006148 4.7e-12 74.7 119 38.7
Eucgr.H00442 Eucalyptus grandis HOM05D005211 ORTHO05D006148 6.2e-12 74.3 115 38.3
CiPaw.02G059600 Carya illinoinensis HOM05D005211 ORTHO05D006148 1.1e-11 73.6 111 41.4
Gorai.001G228500 Gossypium raimondii HOM05D005211 ORTHO05D006148 1.1e-11 73.6 119 41.2
Manes.12G059000 Manihot esculenta HOM05D005211 ORTHO05D006148 1.1e-11 73.6 119 40.3
Gohir.D07G203100 Gossypium hirsutum HOM05D005211 ORTHO05D006148 1.4e-11 73.2 119 41.2
Sabra14G0113200 Salix brachista HOM05D005211 ORTHO05D006148 1.4e-11 73.2 118 39.8
CDE07G0882 Ceratophyllum demersum HOM05D005211 ORTHO05D006148 1.8e-11 72.8 110 42.7
COL.COLO4_26568 Corchorus olitorius HOM05D005211 ORTHO05D006148 2.3e-11 72.4 115 40.9
FAN12G3367 Fragaria x ananassa HOM05D005211 ORTHO05D006148 2.3e-11 72.4 110 41.8
FAN22G0070 Fragaria x ananassa HOM05D005211 ORTHO05D006148 2.3e-11 72.4 110 41.8
Potri.014G149800 Populus trichocarpa HOM05D005211 ORTHO05D006148 2.3e-11 72.4 117 38.5
Cpa.g.sc8.70 Carica papaya HOM05D005211 ORTHO05D006148 3.1e-11 72.0 121 40.5
CiPaw.01G108100 Carya illinoinensis HOM05D005211 ORTHO05D006148 3.1e-11 72.0 112 37.5
Haze_11077 Corylus avellana HOM05D005211 ORTHO05D006148 3.1e-11 72.0 117 36.8
FAN07G0144 Fragaria x ananassa HOM05D005211 ORTHO05D006148 3.1e-11 72.0 110 41.8
Gohir.A07G196700 Gossypium hirsutum HOM05D005211 ORTHO05D006148 3.1e-11 72.0 119 40.3
RcHm_v2.0_Chr4g0409781 Rosa chinensis HOM05D005211 ORTHO05D006148 4.0e-11 71.6 109 40.4
CsaV3_6G003020 Cucumis sativus L. HOM05D005211 ORTHO05D006148 5.2e-11 71.2 89 43.8
Lsat_1_v5_gn_5_178301 Lactuca sativa HOM05D005211 ORTHO05D006148 5.2e-11 71.2 137 38.0
QL93p0263_0042 Quercus lobata HOM05D005211 ORTHO05D006148 5.2e-11 71.2 102 46.1
Eucgr.H00724 Eucalyptus grandis HOM05D005211 ORTHO05D006148 6.8e-11 70.9 120 41.7
FAN12G0052 Fragaria x ananassa HOM05D005211 ORTHO05D006148 6.8e-11 70.9 110 40.9
HPP92_023344 Vanilla planifolia HOM05D005211 ORTHO05D006148 6.8e-11 70.9 95 41.1
Aa31LG1G24830 Aethionema arabicum HOM05D005211 ORTHO05D006148 8.9e-11 70.5 96 42.7
Dinv28809 Davidia involucrata HOM05D005211 ORTHO05D006148 8.9e-11 70.5 100 45.0
Duzib133G1390 Durio zibethinus HOM05D005211 ORTHO05D006148 1.2e-10 70.1 125 39.2
Manes.13G054600 Manihot esculenta HOM05D005211 ORTHO05D006148 1.2e-10 70.1 125 37.6
Migut.N00665 Erythranthe guttata HOM05D005211 ORTHO05D006148 1.5e-10 69.7 105 41.0
Oeu013415.1 Olea europaea HOM05D005211 ORTHO05D006148 1.5e-10 69.7 110 39.1
PGR083G0764 Punica granatum HOM05D005211 ORTHO05D006148 1.5e-10 69.7 113 38.9
CDE02G4090 Ceratophyllum demersum HOM05D005211 ORTHO05D006148 2.0e-10 69.3 109 39.4
RcHm_v2.0_Chr6g0282781 Rosa chinensis HOM05D005211 ORTHO05D006148 2.0e-10 69.3 107 41.1
SGA_v2.0_scaffold77G25295 Striga asiatica HOM05D005211 ORTHO05D006148 2.0e-10 69.3 94 40.4
Hma1.2p1_0959F.1_g241620 Hydrangea macrophylla HOM05D005211 ORTHO05D006148 2.6e-10 68.9 118 39.0
TWI63G1319 Tripterygium wilfordii HOM05D005211 ORTHO05D006148 2.6e-10 68.9 112 38.4
CANSAT01G0934 Cannabis sativa HOM05D005211 ORTHO05D006148 3.4e-10 68.6 123 50.4
AUR62028696 Chenopodium quinoa HOM05D005211 ORTHO05D006148 3.4e-10 68.6 101 45.5
Potri.002G232500 Populus trichocarpa HOM05D005211 ORTHO05D006148 3.4e-10 68.6 111 38.7
CiPaw.14G044000 Carya illinoinensis HOM05D005211 ORTHO05D006148 4.4e-10 68.2 111 42.3
Duzib211G0461 Durio zibethinus HOM05D005211 ORTHO05D006148 4.4e-10 68.2 127 37.8
unitig_0.g414 Utricularia gibba HOM05D005211 ORTHO05D006148 4.4e-10 68.2 91 44.0
Migut.D00738 Erythranthe guttata HOM05D005211 ORTHO05D006148 5.8e-10 67.8 120 45.0
Gohir.A11G142700 Gossypium hirsutum HOM05D005211 ORTHO05D006148 5.8e-10 67.8 132 38.6
CANSAT78G0009 Cannabis sativa HOM05D005211 ORTHO05D006148 7.6e-10 67.4 123 35.0
PSO675G5714 Papaver somniferum HOM05D005211 ORTHO05D006148 7.6e-10 67.4 137 35.0
CDE04G3135 Ceratophyllum demersum HOM05D005211 ORTHO05D006148 1.3e-09 66.6 110 39.1
FAN22G0040 Fragaria x ananassa HOM05D005211 ORTHO05D006148 1.7e-09 66.2 104 41.3
Gorai.007G159800 Gossypium raimondii HOM05D005211 ORTHO05D006148 1.7e-09 66.2 132 37.9
Sabra02G0177300 Salix brachista HOM05D005211 ORTHO05D006148 1.7e-09 66.2 108 38.9
FAN24G0649 Fragaria x ananassa HOM05D005211 ORTHO05D006148 2.2e-09 65.9 122 37.7
RcHm_v2.0_Chr6g0282791 Rosa chinensis HOM05D005211 ORTHO05D006148 2.2e-09 65.9 127 34.6
Gohir.D11G149000 Gossypium hirsutum HOM05D005211 ORTHO05D006148 2.9e-09 65.5 132 37.9
MD05G1158700 Malus domestica HOM05D005211 ORTHO05D006148 2.9e-09 65.5 112 38.4
FAN27G2625 Fragaria x ananassa HOM05D005211 ORTHO05D006148 3.8e-09 65.1 120 37.5
Oeu049588.1 Olea europaea HOM05D005211 ORTHO05D006148 3.8e-09 65.1 96 40.6
CDE09G1368 Ceratophyllum demersum HOM05D005211 ORTHO05D006148 4.9e-09 64.7 103 39.8
Rhsim13G0052900 Rhododendron simsii HOM05D005211 ORTHO05D006148 4.9e-09 64.7 103 38.8
MD10G1151600 Malus domestica HOM05D005211 ORTHO05D006148 6.4e-09 64.3 125 36.8
Prupe.1G178500 Prunus persica HOM05D005211 ORTHO05D006148 6.4e-09 64.3 109 35.8
Duzib138G1875 Durio zibethinus HOM05D005211 ORTHO05D006148 8.4e-09 63.9 125 37.6
Prupe.8G190000 Prunus persica HOM05D005211 ORTHO05D006148 8.4e-09 63.9 99 42.4
TWI18G0981 Tripterygium wilfordii HOM05D005211 ORTHO05D006148 8.4e-09 63.9 103 41.7
Actinidia23357 Actinidia chinensis HOM05D005211 ORTHO05D006148 1.9e-08 62.8 95 41.1
ECA247G2119 Erigeron canadensis HOM05D005211 ORTHO05D006148 2.4e-08 62.4 116 36.2
Ciclev10016996m.g Citrus clementina HOM05D005211 ORTHO05D006148 3.2e-08 62.0 118 46.6
TWI36G1602 Tripterygium wilfordii HOM05D005211 ORTHO05D006148 3.2e-08 62.0 103 39.8
Gohir.D07G167400 Gossypium hirsutum HOM05D005211 ORTHO05D006148 1.2e-07 60.1 100 38.0
MSTRG.18497 Avicennia marina HOM05D005211 ORTHO05D006148 2.7e-07 58.9 101 52.5
unitig_52.g17443 Utricularia gibba HOM05D005211 ORTHO05D006148 2.7e-07 58.9 96 39.6
QL09p046680 Quercus lobata HOM05D005211 ORTHO05D006148 3.5e-07 58.5 103 40.8
Thecc.01G210700 Theobroma cacao HOM05D005211 ORTHO05D006148 4.6e-07 58.2 111 37.8
vmacro02818 Vaccinium macrocarpon HOM05D005211 ORTHO05D006148 4.6e-07 58.2 110 38.2
FvH4_2g17760 Fragaria vesca HOM05D005211 ORTHO05D006148 6.0e-07 57.8 110 37.3
Os04g0660100 Oryza sativa ssp. japonica HOM05D005211 ORTHO05D006148 6.0e-07 57.8 136 30.1
Sp4g25190 Schrenkiella parvula HOM05D005211 ORTHO05D006148 6.0e-07 57.8 120 36.7
Thhalv10017615m.g Eutrema salsugineum HOM05D005211 ORTHO05D006148 7.8e-07 57.4 113 38.1
Carub.0004s2554 Capsella rubella HOM05D005211 ORTHO05D006148 1.0e-06 57.0 119 36.1
HanXRQChr01g0007251 Helianthus annuus HOM05D005211 ORTHO05D006148 2.3e-06 55.8 124 37.1
Dinv10443 Davidia involucrata HOM05D005211 ORTHO05D006148 3.0e-06 55.5 119 43.7
THA.LOC104802290 Tarenaya hassleriana HOM05D005211 ORTHO05D006148 3.0e-06 55.5 114 36.0
Atru.chr6.3543 Acer truncatum HOM05D005211 ORTHO05D006148 3.9e-06 55.1 43 60.5
PGR142G0694 Punica granatum HOM05D005211 ORTHO05D006148 3.9e-06 55.1 127 29.9
Actinidia30014 Actinidia chinensis HOM05D005211 ORTHO05D006148 5.1e-06 54.7 88 42.0
BcaNung03535 Brassica carinata HOM05D005211 ORTHO05D006148 8.6e-06 53.9 121 33.9
THA.LOC104803428 Tarenaya hassleriana HOM05D005211 ORTHO05D006148 8.6e-06 53.9 119 35.3


User provided reference genes

Program Settings