Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen09g012660 Solanum pennellii HOM05D005992 ORTHO05D007476 3.5e-88 328.2 154 100.0
Nitab4.5_0009028g0010 Nicotiana tabacum HOM05D005992 ORTHO05D007476 3.0e-31 139.0 76 82.9
Nitab4.5_0005967g0050 Nicotiana tabacum HOM05D005992 ORTHO05D007476 3.3e-30 135.6 76 77.6
Peaxi162Scf00390g00125 Petunia axillaris HOM05D005992 ORTHO05D007476 1.1e-25 120.6 82 70.7
Solyc09g018900.3 Solanum lycopersicum HOM05D005992 ORTHO05D007476 1.3e-23 113.6 54 100.0
Nitab4.5_0001348g0200 Nicotiana tabacum HOM05D005992 ORTHO05D007476 6.6e-23 111.3 74 71.6
CAN.G874.50 Capsicum annuum HOM05D005992 ORTHO05D007476 1.5e-22 110.2 84 64.3
PGSC0003DMG400027679 Solanum tuberosum HOM05D005992 ORTHO05D007476 1.9e-22 109.8 74 71.6
Nitab4.5_0008751g0010 Nicotiana tabacum HOM05D005992 ORTHO05D007476 3.3e-22 109.0 74 70.3
Sopen06g034190 Solanum pennellii HOM05D005992 ORTHO05D007476 9.6e-22 107.5 74 68.9
Solyc06g082830.3 Solanum lycopersicum HOM05D005992 ORTHO05D007476 1.6e-21 106.7 74 68.9
Cc01_g15730 Coffea canephora HOM05D005992 ORTHO05D007476 5.8e-19 98.2 73 63.0
unitig_60.g25570 Utricularia gibba HOM05D005992 ORTHO05D007476 1.4e-17 93.6 76 57.9
Prupe.8G267200 Prunus persica HOM05D005992 ORTHO05D007476 4.6e-16 88.6 75 56.0
Ca_15291_v3 Cicer arietinum L. HOM05D005992 ORTHO05D007476 1.7e-15 86.7 74 58.1
Oeu064700.1 Olea europaea HOM05D005992 ORTHO05D007476 6.6e-15 84.7 77 53.2
TPR.G38510 Trifolium pratense HOM05D005992 ORTHO05D007476 8.7e-15 84.3 78 56.4
CSS0023701 Camellia sinensis var. sinensis HOM05D005992 ORTHO05D007476 1.9e-14 83.2 80 52.5
CSS0036227 Camellia sinensis var. sinensis HOM05D005992 ORTHO05D007476 1.9e-14 83.2 80 52.5
Lj1C108T9 Lonicera japonica HOM05D005992 ORTHO05D007476 3.3e-14 82.4 72 56.9
Oeu058218.1 Olea europaea HOM05D005992 ORTHO05D007476 7.3e-14 81.3 66 56.1
SalBow6G0883 Salvia bowleyana HOM05D005992 ORTHO05D007476 2.8e-13 79.3 89 46.1
MD03G1298800 Malus domestica HOM05D005992 ORTHO05D007476 3.6e-13 79.0 75 53.3
Medtr3g118100 Medicago truncatula HOM05D005992 ORTHO05D007476 3.6e-13 79.0 73 54.8
FvH4_5g18680 Fragaria vesca HOM05D005992 ORTHO05D007476 4.8e-13 78.6 75 49.3
FAN08G0048 Fragaria x ananassa HOM05D005992 ORTHO05D007476 4.8e-13 78.6 75 49.3
FAN18G0660 Fragaria x ananassa HOM05D005992 ORTHO05D007476 4.8e-13 78.6 75 49.3
FAN13G0560 Fragaria x ananassa HOM05D005992 ORTHO05D007476 6.2e-13 78.2 75 49.3
Hma1.2p1_0834F.1_g225730 Hydrangea macrophylla HOM05D005992 ORTHO05D007476 6.2e-13 78.2 73 50.7
Psat5g001840 Pisum sativum HOM05D005992 ORTHO05D007476 8.1e-13 77.8 69 56.5
PGR044G1143 Punica granatum HOM05D005992 ORTHO05D007476 8.1e-13 77.8 73 49.3
TWI75G1816 Tripterygium wilfordii HOM05D005992 ORTHO05D007476 8.1e-13 77.8 75 52.0
FAN04G1498 Fragaria x ananassa HOM05D005992 ORTHO05D007476 1.1e-12 77.4 75 48.0
SGA_v2.0_scaffold8G04484 Striga asiatica HOM05D005992 ORTHO05D007476 1.1e-12 77.4 75 50.7
TWI36G0694 Tripterygium wilfordii HOM05D005992 ORTHO05D007476 1.1e-12 77.4 81 51.9
Lsat_1_v5_gn_9_15721 Lactuca sativa HOM05D005992 ORTHO05D007476 1.4e-12 77.0 65 56.9
TWI36G1335 Tripterygium wilfordii HOM05D005992 ORTHO05D007476 1.4e-12 77.0 81 51.9
ECA247G1400 Erigeron canadensis HOM05D005992 ORTHO05D007476 1.8e-12 76.6 72 52.8
Migut.D00757 Erythranthe guttata HOM05D005992 ORTHO05D007476 1.8e-12 76.6 64 53.1
Potri.014G172600 Populus trichocarpa HOM05D005992 ORTHO05D007476 1.8e-12 76.6 68 52.9
RcHm_v2.0_Chr7g0176831 Rosa chinensis HOM05D005992 ORTHO05D007476 1.8e-12 76.6 75 48.0
Lalb_Chr11g0061201 Lupinus albus HOM05D005992 ORTHO05D007476 2.4e-12 76.3 73 52.1
Zm00001eb246760 Zea mays HOM05D005992 ORTHO05D007476 2.4e-12 76.3 65 52.3
HanXRQChr08g0230801 Helianthus annuus HOM05D005992 ORTHO05D007476 4.0e-12 75.5 71 53.5
HPP92_004514 Vanilla planifolia HOM05D005992 ORTHO05D007476 5.3e-12 75.1 70 54.3
Dinv28773 Davidia involucrata HOM05D005992 ORTHO05D007476 1.2e-11 73.9 66 54.5
Rhsim01G0246100 Rhododendron simsii HOM05D005992 ORTHO05D007476 1.2e-11 73.9 65 56.9
Cpa.g.sc8.7 Carica papaya HOM05D005992 ORTHO05D007476 1.5e-11 73.6 73 50.7
arahy.Tifrunner.gnm1.ann1.DJH8FA Arachis hypogaea HOM05D005992 ORTHO05D007476 2.0e-11 73.2 67 55.2
TWI18G0378 Tripterygium wilfordii HOM05D005992 ORTHO05D007476 3.4e-11 72.4 65 53.8
MSTRG.18519 Avicennia marina HOM05D005992 ORTHO05D007476 5.8e-11 71.6 76 46.1
vmacro14669 Vaccinium macrocarpon HOM05D005992 ORTHO05D007476 9.9e-11 70.9 65 55.4
QL09p044779 Quercus lobata HOM05D005992 ORTHO05D007476 1.3e-10 70.5 66 53.0
THA.LOC104819021 Tarenaya hassleriana HOM05D005992 ORTHO05D007476 1.3e-10 70.5 82 43.9
GSVIVG01004128001 Vitis vinifera HOM05D005992 ORTHO05D007476 1.3e-10 70.5 67 52.2
CiPaw.13G059000 Carya illinoinensis HOM05D005992 ORTHO05D007476 1.7e-10 70.1 78 47.4
Os02g0599500 Oryza sativa ssp. japonica HOM05D005992 ORTHO05D007476 1.7e-10 70.1 67 50.7
Os02g0609400 Oryza sativa ssp. japonica HOM05D005992 ORTHO05D007476 1.7e-10 70.1 67 50.7
THA.LOC104822452 Tarenaya hassleriana HOM05D005992 ORTHO05D007476 2.2e-10 69.7 73 43.8
Duzib133G0028 Durio zibethinus HOM05D005992 ORTHO05D007476 3.8e-10 68.9 67 49.3
Glyma.06G002700 Glycine max HOM05D005992 ORTHO05D007476 3.8e-10 68.9 64 56.2
Lj1g0017920 Lotus japonicus HOM05D005992 ORTHO05D007476 3.8e-10 68.9 85 45.9
CiPaw.14G047400 Carya illinoinensis HOM05D005992 ORTHO05D007476 6.4e-10 68.2 54 57.4
MBI07_g44661_MAGBIO Magnolia biondii HOM05D005992 ORTHO05D007476 6.4e-10 68.2 65 50.8
Manes.12G055803 Manihot esculenta HOM05D005992 ORTHO05D007476 6.4e-10 68.2 70 47.1
BraA05t22792Z Brassica rapa HOM05D005992 ORTHO05D007476 8.4e-10 67.8 68 45.6
Manes.13G058400 Manihot esculenta HOM05D005992 ORTHO05D007476 8.4e-10 67.8 80 45.0
CANSAT11G0965 Cannabis sativa HOM05D005992 ORTHO05D007476 1.1e-09 67.4 77 45.5
Hma1.2p1_0161F.1_g071860 Hydrangea macrophylla HOM05D005992 ORTHO05D007476 1.1e-09 67.4 72 47.2
AUR62017763 Chenopodium quinoa HOM05D005992 ORTHO05D007476 1.4e-09 67.0 67 50.7
Eucgr.K02345 Eucalyptus grandis HOM05D005992 ORTHO05D007476 1.4e-09 67.0 72 48.6
Carub.0003s0715 Capsella rubella HOM05D005992 ORTHO05D007476 1.9e-09 66.6 67 47.8
SalBow2G0316 Salvia bowleyana HOM05D005992 ORTHO05D007476 1.9e-09 66.6 119 33.6
Phvul.009G118300 Phaseolus vulgaris HOM05D005992 ORTHO05D007476 2.4e-09 66.2 63 52.4
Nn7g37421 Nelumbo nucifera HOM05D005992 ORTHO05D007476 3.2e-09 65.9 70 45.7
PSO357G0365 Papaver somniferum HOM05D005992 ORTHO05D007476 3.2e-09 65.9 51 60.8
PGSC0003DMG400020300 Solanum tuberosum HOM05D005992 ORTHO05D007476 3.2e-09 65.9 35 80.0
Glyma.04G002700 Glycine max HOM05D005992 ORTHO05D007476 4.2e-09 65.5 50 60.0
PSO170G4201 Papaver somniferum HOM05D005992 ORTHO05D007476 4.2e-09 65.5 51 60.8
Duzib138G0279 Durio zibethinus HOM05D005992 ORTHO05D007476 5.5e-09 65.1 68 48.5
Sp3g06520 Schrenkiella parvula HOM05D005992 ORTHO05D007476 5.5e-09 65.1 68 44.1
Gohir.A11G146200 Gossypium hirsutum HOM05D005992 ORTHO05D007476 7.1e-09 64.7 68 47.1
Gohir.D11G152400 Gossypium hirsutum HOM05D005992 ORTHO05D007476 7.1e-09 64.7 68 47.1
Gorai.007G163000 Gossypium raimondii HOM05D005992 ORTHO05D007476 7.1e-09 64.7 68 47.1
Thecc.01G203400 Theobroma cacao HOM05D005992 ORTHO05D007476 7.1e-09 64.7 74 43.2
DCAR_018600 Daucus carota HOM05D005992 ORTHO05D007476 9.3e-09 64.3 82 43.9
Atru.chr6.3466 Acer truncatum HOM05D005992 ORTHO05D007476 1.2e-08 63.9 64 48.4
CARHR183920 Cardamine hirsuta HOM05D005992 ORTHO05D007476 1.2e-08 63.9 72 44.4
AUR62032915 Chenopodium quinoa HOM05D005992 ORTHO05D007476 1.2e-08 63.9 67 49.3
Thhalv10021713m.g Eutrema salsugineum HOM05D005992 ORTHO05D007476 1.2e-08 63.9 66 47.0
Aqoxy2G04184 Aquilegia oxysepala HOM05D001906 ORTHO05D002083 1.6e-08 63.5 61 45.9
AL3G18940 Arabidopsis lyrata HOM05D005992 ORTHO05D007476 1.6e-08 63.5 73 39.7
AL8G21060 Arabidopsis lyrata HOM05D005992 ORTHO05D007476 1.6e-08 63.5 68 45.6
A05p40610 Brassica napus HOM05D005992 ORTHO05D007476 1.6e-08 63.5 68 41.2
COL.COLO4_19718 Corchorus olitorius HOM05D005992 ORTHO05D007476 1.6e-08 63.5 58 51.7
Sabra14G0132200 Salix brachista HOM05D005992 ORTHO05D007476 2.1e-08 63.2 84 40.5
EL10Ac9g23025 Beta vulgaris HOM05D005992 ORTHO05D007476 2.7e-08 62.8 70 47.1
CDE04G1688 Ceratophyllum demersum HOM05D005992 ORTHO05D007476 2.7e-08 62.8 63 44.4
CARHR082280 Cardamine hirsuta HOM05D005992 ORTHO05D007476 3.5e-08 62.4 70 44.3
Sc10g0006540 Simmondsia chinensis HOM05D005992 ORTHO05D007476 3.5e-08 62.4 71 45.1
C05p59720 Brassica napus HOM05D005992 ORTHO05D007476 4.6e-08 62.0 68 42.6
BolC5t34626H Brassica oleracea HOM05D005992 ORTHO05D007476 4.6e-08 62.0 68 42.6
VMungo1309G0397 Vigna mungo HOM05D005992 ORTHO05D007476 4.6e-08 62.0 58 53.4
AT5G48335 Arabidopsis thaliana HOM05D005992 ORTHO05D007476 7.9e-08 61.2 60 48.3
CDE07G1966 Ceratophyllum demersum HOM05D005992 ORTHO05D007476 7.9e-08 61.2 63 44.4
Ah.04g163410 Amaranthus hybridus HOM05D005992 ORTHO05D007476 3.9e-07 58.9 71 40.8
Carub.0008s0791 Capsella rubella HOM05D005992 ORTHO05D007476 5.6e-06 55.1 56 48.2


User provided reference genes

Program Settings