Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen09g009720 Solanum pennellii HOM05D010819 ORTHO05D010408 4.7e-83 311.2 166 100.0
Sopen06g013940 Solanum pennellii HOM05D000003 ORTHO05D000004 3.9e-69 265.0 159 88.7
Sopen05g017700 Solanum pennellii HOM05D000014 ORTHO05D000093 6.0e-46 188.0 102 83.3
PGSC0003DMG400022758 Solanum tuberosum HOM05D000158 ORTHO05D010408 2.8e-43 179.1 163 61.3
PGSC0003DMG400040289 Solanum tuberosum HOM05D010819 ORTHO05D010408 4.5e-41 171.8 164 59.8
PGSC0003DMG400036524 Solanum tuberosum HOM05D000158 ORTHO05D010408 7.9e-38 161.0 100 72.0
Sopen05g013420 Solanum pennellii HOM05D000003 ORTHO05D000004 1.9e-36 156.4 85 85.9
PGSC0003DMG400045112 Solanum tuberosum HOM05D000158 ORTHO05D000197 4.8e-35 151.8 86 77.9
Oeu007102.1 Olea europaea HOM05D000158 ORTHO05D010634 6.7e-29 131.3 88 68.2
Oeu006234.1 Olea europaea HOM05D000158 ORTHO05D000197 1.9e-28 129.8 88 67.0
Oeu015679.1 Olea europaea HOM05D000158 ORTHO05D000197 1.9e-28 129.8 88 67.0
ClCG03G013730 Citrullus lanatus HOM05D000158 ORTHO05D000002 2.5e-28 129.4 88 64.8
ClCG10G003450 Citrullus lanatus HOM05D000158 ORTHO05D000002 2.5e-28 129.4 88 64.8
Oeu005697.1 Olea europaea HOM05D000158 ORTHO05D002858 4.3e-28 128.6 88 65.9
Oeu028306.1 Olea europaea HOM05D000158 ORTHO05D000197 4.3e-28 128.6 88 67.0
Oeu053054.1 Olea europaea HOM05D000158 ORTHO05D010634 9.6e-28 127.5 88 64.8
TPR.G13936 Trifolium pratense HOM05D000158 ORTHO05D000197 1.3e-27 127.1 88 61.4
TPR.G32580 Trifolium pratense HOM05D000158 ORTHO05D003614 1.3e-27 127.1 88 61.4
Oeu057633.1 Olea europaea HOM05D000158 ORTHO05D000197 3.7e-27 125.6 88 65.9
TPR.G20471 Trifolium pratense HOM05D000004 ORTHO05D000002 1.1e-26 124.0 88 61.4
TPR.G22537 Trifolium pratense HOM05D000158 ORTHO05D000197 1.1e-26 124.0 88 60.2
QL07p020245 Quercus lobata HOM05D000158 ORTHO05D000002 2.4e-26 122.9 88 63.6
Lj2g0001766 Lotus japonicus HOM05D000158 ORTHO05D000197 9.0e-26 120.9 88 58.0
MSTRG.22449 Avicennia marina HOM05D000004 ORTHO05D000048 1.5e-25 120.2 87 63.2
Manes.17G011850 Manihot esculenta HOM05D000158 ORTHO05D000197 2.0e-25 119.8 88 61.4
Oeu032984.1 Olea europaea HOM05D000158 ORTHO05D000197 2.0e-25 119.8 88 63.6
Oeu060640.1 Olea europaea HOM05D000158 ORTHO05D000197 2.0e-25 119.8 88 62.5
Lj5g0004307 Lotus japonicus HOM05D000158 ORTHO05D000197 7.6e-25 117.9 88 55.7
Lj3g0012861 Lotus japonicus HOM05D000158 ORTHO05D000197 1.0e-24 117.5 89 57.3
Lj1g0004303 Lotus japonicus HOM05D000158 ORTHO05D000197 1.7e-24 116.7 89 58.4
Oeu041041.1 Olea europaea HOM05D000158 ORTHO05D000197 1.7e-24 116.7 91 59.3
TPR.G15160 Trifolium pratense HOM05D000158 ORTHO05D002858 1.7e-24 116.7 88 58.0
TPR.G1870 Trifolium pratense HOM05D000158 ORTHO05D000197 1.7e-24 116.7 88 56.8
Lj2g0010792 Lotus japonicus HOM05D000158 ORTHO05D000197 2.9e-24 115.9 89 58.4
Lj6g0006038 Lotus japonicus HOM05D000158 ORTHO05D000197 3.8e-24 115.5 89 57.3
LjContig00080g0010393 Lotus japonicus HOM05D000158 ORTHO05D000197 3.8e-24 115.5 89 57.3
Lj2g0019716 Lotus japonicus HOM05D000158 ORTHO05D000197 5.0e-24 115.2 89 57.3
Lj4g0011178 Lotus japonicus HOM05D000158 ORTHO05D000197 5.0e-24 115.2 87 58.6
Manes.09G089621 Manihot esculenta HOM05D000158 ORTHO05D000002 5.0e-24 115.2 91 56.0
TPR.G31232 Trifolium pratense HOM05D000158 ORTHO05D002858 6.5e-24 114.8 87 57.5
TPR.G7146 Trifolium pratense HOM05D000004 ORTHO05D000002 8.4e-24 114.4 87 57.5
Oeu048057.1 Olea europaea HOM05D000158 ORTHO05D000197 1.4e-23 113.6 86 64.0
Lj1g0025016 Lotus japonicus HOM05D000158 ORTHO05D000197 2.5e-23 112.8 89 56.2
CiPaw.04G143100 Carya illinoinensis HOM05D000158 ORTHO05D000197 3.2e-23 112.5 86 55.8
Lj6g0019227 Lotus japonicus HOM05D000158 ORTHO05D000197 3.2e-23 112.5 89 55.1
HanXRQChr02g0042331 Helianthus annuus HOM05D000158 ORTHO05D000197 5.5e-23 111.7 88 58.0
HanXRQChr02g0042351 Helianthus annuus HOM05D000158 ORTHO05D000197 5.5e-23 111.7 88 58.0
Lj3g0008836 Lotus japonicus HOM05D000158 ORTHO05D000197 5.5e-23 111.7 84 59.5
Lj4g0018844 Lotus japonicus HOM05D000158 ORTHO05D000197 5.5e-23 111.7 89 57.3
Lj4g0028212 Lotus japonicus HOM05D000158 ORTHO05D000197 9.3e-23 110.9 88 54.5
TPR.G315 Trifolium pratense HOM05D000158 ORTHO05D002858 3.5e-22 109.0 82 58.5
TPR.G22593 Trifolium pratense HOM05D000158 ORTHO05D000002 4.6e-22 108.6 82 58.5
LjContig00141g0016135 Lotus japonicus HOM05D000158 ORTHO05D003614 6.1e-22 108.2 80 55.0
Lj6g0009515 Lotus japonicus HOM05D000158 ORTHO05D000197 2.3e-21 106.3 88 52.3
Sopen07g011870 Solanum pennellii HOM05D010819 ORTHO05D010408 2.3e-21 106.3 71 93.0
LjContig00357g0027926 Lotus japonicus HOM05D000158 ORTHO05D002858 2.5e-20 102.8 80 56.2
TPR.G27444 Trifolium pratense HOM05D000158 ORTHO05D002858 3.3e-20 102.4 79 57.0
Lj4g0014319 Lotus japonicus HOM05D000158 ORTHO05D002858 7.4e-20 101.3 80 55.0
Manes.01G032701 Manihot esculenta HOM05D000158 ORTHO05D000197 9.7e-20 100.9 91 51.6
TPR.G29283 Trifolium pratense HOM05D000158 ORTHO05D003614 1.6e-19 100.1 73 58.9
RcHm_v2.0_Chr2g0106171 Rosa chinensis HOM05D000158 ORTHO05D000002 3.7e-19 99.0 72 59.7
Sopen09g010270 Solanum pennellii HOM05D000014 ORTHO05D000016 3.7e-19 99.0 71 87.3
Sopen10g010770 Solanum pennellii HOM05D010819 ORTHO05D010408 4.8e-19 98.6 71 78.9
Sopen12g012220 Solanum pennellii HOM05D000158 ORTHO05D000197 1.1e-18 97.4 83 56.6
Manes.09G074619 Manihot esculenta HOM05D000158 ORTHO05D000197 2.4e-18 96.3 67 62.7
Sopen09g009730 Solanum pennellii HOM05D010819 ORTHO05D010408 2.4e-18 96.3 71 71.8
Sopen09g009740 Solanum pennellii HOM05D010819 ORTHO05D010408 2.4e-18 96.3 71 83.1
Sopen09g009760 Solanum pennellii HOM05D000004 ORTHO05D010408 2.4e-18 96.3 71 71.8
Sopen06g013910 Solanum pennellii HOM05D010819 ORTHO05D010408 3.1e-18 95.9 71 71.8
Thhalv10029457m.g Eutrema salsugineum HOM05D000158 ORTHO05D000197 4.1e-18 95.5 86 52.3
Sopen00g004880 Solanum pennellii HOM05D010819 ORTHO05D010408 4.1e-18 95.5 71 85.9
Sopen09g009750 Solanum pennellii HOM05D010819 ORTHO05D010408 5.3e-18 95.1 71 84.5
PGSC0003DMG400005312 Solanum tuberosum HOM05D000158 ORTHO05D002858 5.3e-18 95.1 49 83.7
Gorai.004G105400 Gossypium raimondii HOM05D000158 ORTHO05D000197 9.0e-18 94.4 74 58.1
PGSC0003DMG400036915 Solanum tuberosum HOM05D000158 ORTHO05D000197 2.0e-17 93.2 61 72.1
Manes.17G011766 Manihot esculenta HOM05D000158 ORTHO05D000197 5.9e-17 91.7 67 61.2
Glyma.05G072900 Glycine max HOM05D000158 ORTHO05D000197 1.4e-15 87.0 66 59.1
Lj1g0019916 Lotus japonicus HOM05D000158 ORTHO05D000197 2.5e-15 86.3 72 55.6
Lj3g0020463 Lotus japonicus HOM05D000158 ORTHO05D000197 4.2e-15 85.5 68 55.9
Oeu028104.1 Olea europaea HOM05D000158 ORTHO05D000197 4.2e-15 85.5 68 58.8
CAN.G15806.1 Capsicum annuum HOM05D000158 ORTHO05D000197 5.5e-15 85.1 67 53.7
Lj5g0012305 Lotus japonicus HOM05D000158 ORTHO05D000197 5.5e-15 85.1 68 55.9
Sopen00g002970 Solanum pennellii HOM05D010819 ORTHO05D010408 7.2e-15 84.7 72 80.6
Sopen10g008140 Solanum pennellii HOM05D010819 ORTHO05D010408 9.4e-15 84.3 70 78.6
LjContig00506g0000245 Lotus japonicus HOM05D000158 ORTHO05D000197 1.2e-14 84.0 68 54.4
Thhalv10023038m.g Eutrema salsugineum HOM05D000158 ORTHO05D000197 6.1e-14 81.6 68 54.4
Lj6g0015358 Lotus japonicus HOM05D000158 ORTHO05D000197 6.1e-14 81.6 68 54.4
Sopen00g004610 Solanum pennellii HOM05D010819 ORTHO05D010408 6.1e-14 81.6 71 74.6
Oeu034895.1 Olea europaea HOM05D000158 ORTHO05D000002 2.3e-13 79.7 49 71.4
Lj1g0013168 Lotus japonicus HOM05D000158 ORTHO05D000197 5.1e-13 78.6 63 54.0
Oeu006971.1 Olea europaea HOM05D000004 ORTHO05D000048 6.7e-13 78.2 49 69.4
Thhalv10028167m.g Eutrema salsugineum HOM05D000158 ORTHO05D000197 1.1e-12 77.4 60 56.7
Lj1g0026464 Lotus japonicus HOM05D000158 ORTHO05D000197 2.0e-12 76.6 63 52.4
Migut.O00085 Erythranthe guttata HOM05D000158 ORTHO05D000197 2.2e-11 73.2 57 57.9
Atru.chr13.2611 Acer truncatum HOM05D000004 ORTHO05D000048 2.8e-11 72.8 49 65.3
Manes.17G045701 Manihot esculenta HOM05D000158 ORTHO05D000197 2.8e-11 72.8 64 51.6
Lj1g0008277 Lotus japonicus HOM05D000158 ORTHO05D002858 3.7e-11 72.4 49 65.3
Lj2g0007285 Lotus japonicus HOM05D000158 ORTHO05D002858 3.7e-11 72.4 49 65.3
Lj1g0001842 Lotus japonicus HOM05D000158 ORTHO05D002858 8.2e-11 71.2 49 65.3
Lj5g0025086 Lotus japonicus HOM05D000158 ORTHO05D002858 1.1e-10 70.9 49 63.3
Manes.14G158475 Manihot esculenta HOM05D000158 ORTHO05D001651 1.8e-10 70.1 45 66.7
Manes.17G002683 Manihot esculenta HOM05D000158 ORTHO05D000197 2.4e-10 69.7 83 43.4
Atru.chr1.2246 Acer truncatum HOM05D000004 ORTHO05D000048 4.1e-10 68.9 49 63.3
arahy.Tifrunner.gnm1.ann1.F094KE Arachis hypogaea HOM05D000158 ORTHO05D000197 4.1e-10 68.9 62 48.4
MELO3C004850.2 Cucumis melo HOM05D000158 ORTHO05D000197 4.1e-10 68.9 49 59.2
TPR.G39757 Trifolium pratense HOM05D000158 ORTHO05D002858 1.2e-09 67.4 45 64.4
FvH4_4g20344 Fragaria vesca HOM05D000158 ORTHO05D002858 2.0e-09 66.6 44 63.6
PGSC0003DMG400042426 Solanum tuberosum HOM05D000158 ORTHO05D011832 2.6e-09 66.2 51 56.9
CiPaw.01G104600 Carya illinoinensis HOM05D000158 ORTHO05D000197 7.7e-09 64.7 52 51.9
arahy.Tifrunner.gnm1.ann1.J536F0 Arachis hypogaea HOM05D000158 ORTHO05D000197 1.7e-08 63.5 59 44.1
CsaV3_1G030770 Cucumis sativus L. HOM05D000158 ORTHO05D000197 2.9e-08 62.8 45 57.8
Lj2g0025380 Lotus japonicus HOM05D000158 ORTHO05D000197 2.9e-08 62.8 49 53.1
Glyma.11G160800 Glycine max HOM05D000158 ORTHO05D000197 1.4e-07 60.5 48 54.2
Lj3g0009331 Lotus japonicus HOM05D000158 ORTHO05D000197 1.4e-07 60.5 50 52.0
Lj3g0014470 Lotus japonicus HOM05D000158 ORTHO05D000197 1.4e-07 60.5 50 52.0
Lj1g0013324 Lotus japonicus HOM05D000158 ORTHO05D000197 3.2e-07 59.3 50 50.0
Lj3g0017745 Lotus japonicus HOM05D000158 ORTHO05D000197 3.2e-07 59.3 50 50.0
Lj5g0004453 Lotus japonicus HOM05D000158 ORTHO05D000197 3.2e-07 59.3 50 50.0
AL6G42760 Arabidopsis lyrata HOM05D003376 ORTHO05D001185 4.2e-07 58.9 88 36.4
Lj2g0019299 Lotus japonicus HOM05D000158 ORTHO05D002858 4.2e-07 58.9 35 71.4
Lj2g0023445 Lotus japonicus HOM05D000158 ORTHO05D002858 4.2e-07 58.9 35 71.4
Lj5g0000251 Lotus japonicus HOM05D000158 ORTHO05D002858 4.2e-07 58.9 37 64.9
AL6G41750 Arabidopsis lyrata HOM05D003376 ORTHO05D000002 5.5e-07 58.5 88 35.2
AL88U10020 Arabidopsis lyrata HOM05D003376 ORTHO05D001185 7.2e-07 58.2 88 37.5
AL8G17310 Arabidopsis lyrata HOM05D003376 ORTHO05D001185 7.2e-07 58.2 88 37.5
AL8G17320 Arabidopsis lyrata HOM05D003376 ORTHO05D001185 7.2e-07 58.2 88 37.5
AL8G17360 Arabidopsis lyrata HOM05D003376 ORTHO05D011035 7.2e-07 58.2 88 37.5
arahy.Tifrunner.gnm1.ann1.BZ6XIA Arachis hypogaea HOM05D003326 ORTHO05D000002 7.2e-07 58.2 80 37.5
Lj4g0014350 Lotus japonicus HOM05D005324 ORTHO05D001185 9.4e-07 57.8 88 34.1
Lj4g0026246 Lotus japonicus HOM05D000158 ORTHO05D002858 9.4e-07 57.8 37 67.6
Lj6g0006708 Lotus japonicus HOM05D005324 ORTHO05D001185 9.4e-07 57.8 88 34.1
CSS0043914 Camellia sinensis var. sinensis HOM05D000158 ORTHO05D000197 1.6e-06 57.0 49 51.0
Lj6g0011364 Lotus japonicus HOM05D005324 ORTHO05D001185 1.6e-06 57.0 88 33.0
Manes.07G056008 Manihot esculenta HOM05D000158 ORTHO05D000197 1.6e-06 57.0 91 38.5
AL1G57140 Arabidopsis lyrata HOM05D003376 ORTHO05D001185 2.1e-06 56.6 88 36.4
CANSAT80G1954 Cannabis sativa HOM05D005324 ORTHO05D001185 2.1e-06 56.6 65 44.6
Oeu050619.1 Olea europaea HOM05D004680 ORTHO05D005939 2.1e-06 56.6 40 60.0
Thhalv10000705m.g Eutrema salsugineum HOM05D003376 ORTHO05D001185 3.6e-06 55.8 53 45.3
Thhalv10002934m.g Eutrema salsugineum HOM05D003376 ORTHO05D001185 3.6e-06 55.8 53 45.3
Thhalv10003417m.g Eutrema salsugineum HOM05D003376 ORTHO05D000048 3.6e-06 55.8 53 45.3
Lj2g0007658 Lotus japonicus HOM05D005324 ORTHO05D001185 4.7e-06 55.5 86 32.6
Atru.chr13.2110 Acer truncatum HOM05D005324 ORTHO05D001185 7.9e-06 54.7 79 34.2
Migut.O00086 Erythranthe guttata HOM05D000158 ORTHO05D000197 7.9e-06 54.7 43 55.8
Thhalv10028343m.g Eutrema salsugineum HOM05D003376 ORTHO05D001185 7.9e-06 54.7 53 45.3


User provided reference genes

Program Settings