Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen09g008430 Solanum pennellii HOM05D002537 ORTHO05D002751 3.1e-60 235.0 121 100.0
PGSC0003DMG400037032 Solanum tuberosum HOM05D002537 ORTHO05D002751 6.1e-40 167.5 121 77.7
PGSC0003DMG400037364 Solanum tuberosum HOM05D002537 ORTHO05D002751 5.2e-39 164.5 121 75.2
Sopen04g017230 Solanum pennellii HOM05D002537 ORTHO05D002751 4.3e-33 144.8 121 66.9
Solyc01g065900.3 Solanum lycopersicum HOM05D002537 ORTHO05D002751 7.3e-33 144.1 120 70.8
Solyc04g045430.4 Solanum lycopersicum HOM05D002537 ORTHO05D002751 9.5e-33 143.7 121 66.1
CAN.G124.2 Capsicum annuum HOM05D002537 ORTHO05D002751 5.9e-27 124.4 125 64.0
Peaxi162Scf00128g01777 Petunia axillaris HOM05D002537 ORTHO05D002751 6.6e-18 94.4 116 53.4
Nitab4.5_0000049g0070 Nicotiana tabacum HOM05D002537 ORTHO05D002751 9.5e-17 90.5 108 52.8
Nitab4.5_0007658g0010 Nicotiana tabacum HOM05D002537 ORTHO05D002751 1.2e-16 90.1 108 51.9
Dinv19305 Davidia involucrata HOM05D002537 ORTHO05D002751 4.7e-16 88.2 117 48.7
Atru.chr12.1406 Acer truncatum HOM05D002537 ORTHO05D002751 8.9e-15 84.0 119 47.1
Oeu058895.1 Olea europaea HOM05D002537 ORTHO05D002751 1.2e-14 83.6 117 45.3
Hma1.2p1_0787F.1_g217860 Hydrangea macrophylla HOM05D002537 ORTHO05D002751 1.5e-14 83.2 117 45.3
Manes.08G101700 Manihot esculenta HOM05D002537 ORTHO05D002751 2.0e-14 82.8 119 45.4
Actinidia22118 Actinidia chinensis HOM05D002537 ORTHO05D002751 4.4e-14 81.6 79 57.0
CSS0022489 Camellia sinensis var. sinensis HOM05D002537 ORTHO05D002751 4.4e-14 81.6 80 60.0
CSS0047452 Camellia sinensis var. sinensis HOM05D002537 ORTHO05D002751 4.4e-14 81.6 80 60.0
Rhsim12G0017600 Rhododendron simsii HOM05D002537 ORTHO05D002751 4.4e-14 81.6 83 55.4
Sed0006357 Sechium edule HOM05D002537 ORTHO05D002751 5.8e-14 81.3 118 47.5
Actinidia30589 Actinidia chinensis HOM05D002537 ORTHO05D002751 7.5e-14 80.9 105 46.7
COL.COLO4_21770 Corchorus olitorius HOM05D002537 ORTHO05D002751 7.5e-14 80.9 80 58.8
Gorai.002G021600 Gossypium raimondii HOM05D002537 ORTHO05D002751 7.5e-14 80.9 119 44.5
Sed0027950 Sechium edule HOM05D002537 ORTHO05D002751 7.5e-14 80.9 118 46.6
Duzib132G0792 Durio zibethinus HOM05D002537 ORTHO05D002751 9.8e-14 80.5 121 46.3
Duzib052G0845 Durio zibethinus HOM05D002537 ORTHO05D002751 1.7e-13 79.7 119 47.1
Gohir.D01G019300 Gossypium hirsutum HOM05D002537 ORTHO05D002751 1.7e-13 79.7 118 42.4
Dinv01472 Davidia involucrata HOM05D002537 ORTHO05D002751 2.9e-13 79.0 113 47.8
vmacro01022 Vaccinium macrocarpon HOM05D002537 ORTHO05D002751 3.7e-13 78.6 96 53.1
Gohir.A01G020800 Gossypium hirsutum HOM05D002537 ORTHO05D002751 4.9e-13 78.2 118 42.4
MSTRG.457 Avicennia marina HOM05D002537 ORTHO05D002751 6.4e-13 77.8 115 40.9
TWI36G0118 Tripterygium wilfordii HOM05D002537 ORTHO05D002751 6.4e-13 77.8 99 49.5
GSVIVG01001081001 Vitis vinifera HOM05D002537 ORTHO05D002751 6.4e-13 77.8 117 46.2
BolC4t23124H Brassica oleracea HOM05D002537 ORTHO05D002751 1.1e-12 77.0 80 53.8
Ciclev10005329m.g Citrus clementina HOM05D002537 ORTHO05D002751 1.1e-12 77.0 117 46.2
Prupe.1G216100 Prunus persica HOM05D002537 ORTHO05D002751 1.1e-12 77.0 116 42.2
Sc11g0000120 Simmondsia chinensis HOM05D002537 ORTHO05D002751 1.1e-12 77.0 116 46.6
Cpa.g.sc2461.1 Carica papaya HOM05D002537 ORTHO05D002751 1.4e-12 76.6 120 46.7
Lj6A837G33 Lonicera japonica HOM05D002537 ORTHO05D002751 1.4e-12 76.6 111 44.1
ECA234G1825 Erigeron canadensis HOM05D002537 ORTHO05D002751 1.9e-12 76.3 115 41.7
MD16G1130200 Malus domestica HOM05D002537 ORTHO05D002751 1.9e-12 76.3 125 42.4
Thecc.02G193200 Theobroma cacao HOM05D002537 ORTHO05D002751 1.9e-12 76.3 121 47.1
TAR475G0008 Trochodendron aralioides HOM05D002537 ORTHO05D002751 2.4e-12 75.9 117 42.7
CSS0009758 Camellia sinensis var. sinensis HOM05D002537 ORTHO05D002751 3.2e-12 75.5 95 49.5
CSS0033009 Camellia sinensis var. sinensis HOM05D002537 ORTHO05D002751 3.2e-12 75.5 95 49.5
Haze_12497 Corylus avellana HOM05D002537 ORTHO05D002751 3.2e-12 75.5 116 46.6
Nn4g22137 Nelumbo nucifera HOM05D002537 ORTHO05D002751 3.2e-12 75.5 116 42.2
MD13G1130000 Malus domestica HOM05D002537 ORTHO05D002751 4.1e-12 75.1 118 41.5
TWI75G0641 Tripterygium wilfordii HOM05D002537 ORTHO05D002751 4.1e-12 75.1 120 46.7
unitig_22.g6378 Utricularia gibba HOM05D002537 ORTHO05D002751 4.1e-12 75.1 120 45.0
Glyma.10G298700 Glycine max HOM05D002537 ORTHO05D002751 5.4e-12 74.7 116 42.2
Manes.09G187700 Manihot esculenta HOM05D002537 ORTHO05D002751 5.4e-12 74.7 117 41.9
QL03p049540 Quercus lobata HOM05D002537 ORTHO05D002751 5.4e-12 74.7 116 44.8
Aa31LG9G13480 Aethionema arabicum HOM05D002537 ORTHO05D002751 7.1e-12 74.3 66 54.5
ClCG06G001740 Citrullus lanatus HOM05D002537 ORTHO05D002751 9.2e-12 73.9 118 43.2
C04p15530 Brassica napus HOM05D002537 ORTHO05D002751 1.2e-11 73.6 81 53.1
LjContig00470g0023601 Lotus japonicus HOM05D002537 ORTHO05D002751 1.2e-11 73.6 77 51.9
Migut.K01061 Erythranthe guttata HOM05D002537 ORTHO05D002751 1.6e-11 73.2 62 56.5
PGSC0003DMG400037473 Solanum tuberosum HOM05D002537 ORTHO05D002751 1.6e-11 73.2 62 64.5
THA.LOC104814208 Tarenaya hassleriana HOM05D002537 ORTHO05D002751 1.6e-11 73.2 63 60.3
TAR374G1592 Trochodendron aralioides HOM05D002537 ORTHO05D002751 1.6e-11 73.2 117 43.6
FAN07G0908 Fragaria x ananassa HOM05D002537 ORTHO05D002751 2.1e-11 72.8 117 43.6
Potri.001G066900 Populus trichocarpa HOM05D002537 ORTHO05D002751 2.1e-11 72.8 117 43.6
Potri.003G163000 Populus trichocarpa HOM05D002537 ORTHO05D002751 2.1e-11 72.8 119 43.7
Sp4g15890 Schrenkiella parvula HOM05D002537 ORTHO05D002751 2.1e-11 72.8 66 54.5
CiPaw.05G101900 Carya illinoinensis HOM05D002537 ORTHO05D002751 2.7e-11 72.4 93 50.5
FvH4_4g22720 Fragaria vesca HOM05D002537 ORTHO05D002751 2.7e-11 72.4 117 43.6
Glyma.20G249900 Glycine max HOM05D002537 ORTHO05D002751 2.7e-11 72.4 90 51.1
TWI18G1224 Tripterygium wilfordii HOM05D002537 ORTHO05D002751 2.7e-11 72.4 118 44.9
Cc11_g15070 Coffea canephora HOM05D002537 ORTHO05D002751 3.5e-11 72.0 84 50.0
Thhalv10016974m.g Eutrema salsugineum HOM05D002537 ORTHO05D002751 3.5e-11 72.0 65 55.4
RcHm_v2.0_Chr2g0112661 Rosa chinensis HOM05D002537 ORTHO05D002751 3.5e-11 72.0 83 49.4
Hund25508 Selenicereus undatus HOM05D002537 ORTHO05D002751 4.6e-11 71.6 93 48.4
Aqoxy5G03143 Aquilegia oxysepala HOM05D002537 ORTHO05D002751 6.0e-11 71.2 117 43.6
AL4G29220 Arabidopsis lyrata HOM05D002537 ORTHO05D002751 7.8e-11 70.9 64 53.1
SalBow2G0780 Salvia bowleyana HOM05D002537 ORTHO05D002751 7.8e-11 70.9 127 41.7
BcaB06g28695 Brassica carinata HOM05D002537 ORTHO05D002751 1.0e-10 70.5 63 55.6
FAN12G1604 Fragaria x ananassa HOM05D002537 ORTHO05D002751 1.0e-10 70.5 117 42.7
Carub.0004s1518 Capsella rubella HOM05D002537 ORTHO05D002751 1.3e-10 70.1 63 54.0
CsaV3_6G007760 Cucumis sativus L. HOM05D002537 ORTHO05D002751 1.7e-10 69.7 118 41.5
RhsimUnG0101800 Rhododendron simsii HOM05D002537 ORTHO05D002751 1.7e-10 69.7 80 52.5
RcHm_v2.0_Chr4g0428941 Rosa chinensis HOM05D002537 ORTHO05D002751 1.7e-10 69.7 115 39.1
Zm00001eb084860 Zea mays HOM05D002537 ORTHO05D002751 1.7e-10 69.7 120 40.0
AT2G33550 Arabidopsis thaliana HOM05D002537 ORTHO05D002751 2.3e-10 69.3 64 51.6
A05p11980 Brassica napus HOM05D002537 ORTHO05D002751 2.3e-10 69.3 81 50.6
BcaB02g10573 Brassica carinata HOM05D002537 ORTHO05D002751 3.0e-10 68.9 65 53.8
MELO3C022356.2 Cucumis melo HOM05D002537 ORTHO05D002751 3.0e-10 68.9 118 41.5
Lsat_1_v5_gn_4_1480 Lactuca sativa HOM05D002537 ORTHO05D002751 3.0e-10 68.9 61 55.7
Sabra01G0046500 Salix brachista HOM05D002537 ORTHO05D002751 3.0e-10 68.9 80 50.0
DCAR_024631 Daucus carota HOM05D002537 ORTHO05D002751 3.9e-10 68.6 85 51.8
PGR102G0822 Punica granatum HOM05D002537 ORTHO05D002751 3.9e-10 68.6 84 46.4
BcaC02g07801 Brassica carinata HOM05D002537 ORTHO05D002751 5.1e-10 68.2 65 52.3
A04p25830 Brassica napus HOM05D002537 ORTHO05D002751 5.1e-10 68.2 65 52.3
C04p63060 Brassica napus HOM05D002537 ORTHO05D002751 5.1e-10 68.2 65 52.3
BolC4t27781H Brassica oleracea HOM05D002537 ORTHO05D002751 5.1e-10 68.2 65 52.3
BraA04t18085Z Brassica rapa HOM05D002537 ORTHO05D002751 5.1e-10 68.2 65 52.3
AUR62028844 Chenopodium quinoa HOM05D002537 ORTHO05D002751 5.1e-10 68.2 79 49.4
BcaB06g28696 Brassica carinata HOM05D002537 ORTHO05D002751 6.6e-10 67.8 84 48.8
PGR119G1955 Punica granatum HOM05D002537 ORTHO05D002751 6.6e-10 67.8 81 51.9
EL10Ac6g13606 Beta vulgaris HOM05D002537 ORTHO05D002751 8.6e-10 67.4 83 49.4
FAN17G1050 Fragaria x ananassa HOM05D002537 ORTHO05D002751 8.6e-10 67.4 117 41.9
Eucgr.B03553 Eucalyptus grandis HOM05D002537 ORTHO05D002751 1.1e-09 67.0 79 49.4
MBI10_g39274_MAGBIO Magnolia biondii HOM05D002537 ORTHO05D002751 1.1e-09 67.0 114 43.9
GSVIVG01008644001 Vitis vinifera HOM05D002537 ORTHO05D002751 1.1e-09 67.0 61 54.1
CiPaw.06G109100 Carya illinoinensis HOM05D002537 ORTHO05D002751 1.5e-09 66.6 117 41.9
CDE05G0009 Ceratophyllum demersum HOM05D002537 ORTHO05D002751 1.9e-09 66.2 120 37.5
Sabra03G0118500 Salix brachista HOM05D002537 ORTHO05D002751 1.9e-09 66.2 117 41.9
BraA05t20141Z Brassica rapa HOM05D002537 ORTHO05D002751 2.5e-09 65.9 83 47.0
Aqoxy1G00445 Aquilegia oxysepala HOM05D002537 ORTHO05D002751 4.3e-09 65.1 117 40.2
HanXRQChr12g0384721 Helianthus annuus HOM05D002537 ORTHO05D002751 4.3e-09 65.1 61 54.1
Lalb_Chr02g0144711 Lupinus albus HOM05D002537 ORTHO05D002751 4.3e-09 65.1 125 37.6
Phvul.007G000400 Phaseolus vulgaris HOM05D002537 ORTHO05D002751 5.6e-09 64.7 106 47.2
Potri.015G105800 Populus trichocarpa HOM05D002537 ORTHO05D002751 5.6e-09 64.7 108 42.6
Zm00001eb180800 Zea mays HOM05D002537 ORTHO05D002751 9.5e-09 63.9 119 37.8
CDE05G3192 Ceratophyllum demersum HOM05D002537 ORTHO05D002751 1.2e-08 63.5 120 38.3
Lalb_Chr10g0092211 Lupinus albus HOM05D002537 ORTHO05D002751 1.2e-08 63.5 123 39.0
Zm00001eb421380 Zea mays HOM05D002537 ORTHO05D002751 1.2e-08 63.5 112 38.4
Ca_07076_v3 Cicer arietinum L. HOM05D002537 ORTHO05D002751 1.6e-08 63.2 93 40.9
ECA246G2368 Erigeron canadensis HOM05D002537 ORTHO05D002751 1.6e-08 63.2 117 36.8
THA.LOC104812603 Tarenaya hassleriana HOM05D002537 ORTHO05D002751 2.1e-08 62.8 119 39.5
Psat3g190160 Pisum sativum HOM05D002537 ORTHO05D002751 2.8e-08 62.4 93 44.1
SHI04124 Sapria himalayana HOM05D002537 ORTHO05D002751 2.8e-08 62.4 90 40.0
TPR.G35704 Trifolium pratense HOM05D002537 ORTHO05D002751 2.8e-08 62.4 85 41.2
QL10p000562 Quercus lobata HOM05D002537 ORTHO05D002751 3.6e-08 62.0 113 38.1
TAR622G0948 Trochodendron aralioides HOM05D002537 ORTHO05D002751 3.6e-08 62.0 115 38.3
BcaC02g07800 Brassica carinata HOM05D002537 ORTHO05D002751 4.7e-08 61.6 54 57.4
VMungo1383G0533 Vigna mungo HOM05D002537 ORTHO05D002751 4.7e-08 61.6 121 38.8
arahy.Tifrunner.gnm1.ann1.QC7JPT Arachis hypogaea HOM05D002537 ORTHO05D002751 6.2e-08 61.2 116 37.9
arahy.Tifrunner.gnm1.ann1.VMJF59 Arachis hypogaea HOM05D002537 ORTHO05D002751 6.2e-08 61.2 116 37.9
Glyma.08G257500 Glycine max HOM05D002537 ORTHO05D002751 8.1e-08 60.8 121 38.0
Lj1g0023956 Lotus japonicus HOM05D002537 ORTHO05D002751 8.1e-08 60.8 121 39.7
HPP92_023028 Vanilla planifolia HOM05D002537 ORTHO05D002751 8.1e-08 60.8 86 45.3
VMungo0720G0377 Vigna mungo HOM05D002537 ORTHO05D002751 8.1e-08 60.8 106 44.3
CARHR127560 Cardamine hirsuta HOM05D002537 ORTHO05D002751 1.4e-07 60.1 101 38.6
Migut.D01185 Erythranthe guttata HOM05D002537 ORTHO05D002751 1.4e-07 60.1 117 35.0
Phvul.008G019400 Phaseolus vulgaris HOM05D002537 ORTHO05D002751 1.4e-07 60.1 121 38.0
Actinidia25525 Actinidia chinensis HOM05D002537 ORTHO05D002751 1.8e-07 59.7 80 47.5
Glyma.18G281800 Glycine max HOM05D002537 ORTHO05D002751 1.8e-07 59.7 120 35.0
ATR0582G285 Amborella trichopoda HOM05D002537 ORTHO05D002751 2.3e-07 59.3 108 37.0
PSO478G1702 Papaver somniferum HOM05D002537 ORTHO05D002751 3.1e-07 58.9 108 38.9
SEGI_15899 Sequoiadendron giganteum HOM05D002537 ORTHO05D002751 3.1e-07 58.9 61 47.5
arahy.Tifrunner.gnm1.ann1.Q6HYPX Arachis hypogaea HOM05D002537 ORTHO05D002751 4.0e-07 58.5 91 40.7
Medtr7g020870 Medicago truncatula HOM05D002537 ORTHO05D002751 4.0e-07 58.5 100 38.0
Os04g0397500 Oryza sativa ssp. japonica HOM05D002537 ORTHO05D002751 4.0e-07 58.5 61 49.2
CAN.G843.13 Capsicum annuum HOM05D002537 ORTHO05D002751 5.2e-07 58.2 136 35.3
CDE02G2776 Ceratophyllum demersum HOM05D002537 ORTHO05D002751 5.2e-07 58.2 79 41.8
arahy.Tifrunner.gnm1.ann1.85CPFH Arachis hypogaea HOM05D002537 ORTHO05D002751 8.9e-07 57.4 91 39.6
Ciclev10033491m.g Citrus clementina HOM05D002537 ORTHO05D002751 8.9e-07 57.4 132 34.8
Medtr1g112650 Medicago truncatula HOM05D002537 ORTHO05D002751 8.9e-07 57.4 93 39.8
PSO017G5279 Papaver somniferum HOM05D002537 ORTHO05D002751 1.2e-06 57.0 108 38.0
Duzib084G0396 Durio zibethinus HOM05D002537 ORTHO05D002751 2.0e-06 56.2 80 43.8
Hma1.2p1_0577F.1_g182310 Hydrangea macrophylla HOM05D002537 ORTHO05D002751 2.0e-06 56.2 78 42.3
DCAR_021402 Daucus carota HOM05D002537 ORTHO05D002751 3.4e-06 55.5 82 41.5
Sabra15G0126000 Salix brachista HOM05D002537 ORTHO05D002751 3.4e-06 55.5 92 38.0
Zm00001eb242030 Zea mays HOM05D002537 ORTHO05D002751 3.4e-06 55.5 99 37.4
Atru.chr6.1911 Acer truncatum HOM05D002537 ORTHO05D002751 4.4e-06 55.1 91 38.5
HanXRQChr05g0155411 Helianthus annuus HOM05D002537 ORTHO05D002751 4.4e-06 55.1 111 33.3
Nitab4.5_0000976g0050 Nicotiana tabacum HOM05D002537 ORTHO05D002751 4.4e-06 55.1 58 44.8
CDE06G0988 Ceratophyllum demersum HOM05D002537 ORTHO05D002751 9.9e-06 53.9 95 37.9


User provided reference genes

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