Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen09g006940 Solanum pennellii HOM05D006476 ORTHO05D008178 1.0e-309 1065.8 510 100.0
Solyc09g013100.3 Solanum lycopersicum HOM05D006476 ORTHO05D008178 8.8e-306 1052.7 510 98.6
PGSC0003DMG400029192 Solanum tuberosum HOM05D006476 ORTHO05D008178 9.1e-287 989.6 580 83.6
Nitab4.5_0004676g0040 Nicotiana tabacum HOM05D006476 ORTHO05D008178 2.9e-277 958.0 511 88.1
Nitab4.5_0000230g0070 Nicotiana tabacum HOM05D006476 ORTHO05D008178 1.8e-274 948.7 518 86.7
CAN.G1194.2 Capsicum annuum HOM05D006476 ORTHO05D008178 2.3e-274 948.3 515 88.9
Solyc09g015470.4 Solanum lycopersicum HOM05D006476 ORTHO05D008178 2.1e-259 898.7 510 86.5
MSTRG.10202 Avicennia marina HOM05D006476 ORTHO05D008178 2.8e-243 845.1 509 77.4
Hma1.2p1_0479F.1_g161560 Hydrangea macrophylla HOM05D006476 ORTHO05D008178 2.2e-240 835.5 504 76.4
Dinv10268 Davidia involucrata HOM05D006476 ORTHO05D008178 5.4e-239 830.9 514 75.9
Thecc.05G008700 Theobroma cacao HOM05D006476 ORTHO05D008178 2.5e-236 822.0 514 75.5
Migut.L02041 Erythranthe guttata HOM05D006476 ORTHO05D008178 5.6e-236 820.8 513 74.7
Gohir.D04G134700 Gossypium hirsutum HOM05D006476 ORTHO05D008178 9.0e-234 813.5 514 74.9
Cc06_g00920 Coffea canephora HOM05D006476 ORTHO05D008178 1.2e-233 813.1 507 76.1
Gohir.A04G095014 Gossypium hirsutum HOM05D006476 ORTHO05D008178 1.2e-233 813.1 514 74.9
Gorai.012G118300 Gossypium raimondii HOM05D006476 ORTHO05D008178 4.5e-233 811.2 514 74.5
PGR031G1226 Punica granatum HOM05D006476 ORTHO05D008178 6.0e-230 800.8 508 73.4
QL07p034180 Quercus lobata HOM05D006476 ORTHO05D008178 1.8e-229 799.3 510 75.3
Gohir.A01G229200 Gossypium hirsutum HOM05D006476 ORTHO05D008178 1.5e-228 796.2 503 74.4
Potri.016G123900 Populus trichocarpa HOM05D006476 ORTHO05D008178 1.5e-228 796.2 514 73.3
Gorai.002G265900 Gossypium raimondii HOM05D006476 ORTHO05D008178 4.3e-228 794.7 503 74.2
FvH4_6g10790 Fragaria vesca HOM05D006476 ORTHO05D008178 7.4e-228 793.9 510 74.5
FAN05G4924 Fragaria x ananassa HOM05D006476 ORTHO05D008178 7.4e-228 793.9 510 74.3
RcHm_v2.0_Chr3g0461841 Rosa chinensis HOM05D006476 ORTHO05D008178 1.3e-227 793.1 519 74.0
unitig_26.g9345 Utricularia gibba HOM05D006476 ORTHO05D008178 1.6e-227 792.7 492 75.6
FAN09G2591 Fragaria x ananassa HOM05D006476 ORTHO05D008178 1.1e-226 790.0 510 73.9
FAN09G3668 Fragaria x ananassa HOM05D006476 ORTHO05D008178 1.1e-226 790.0 510 73.9
FAN05G3786 Fragaria x ananassa HOM05D006476 ORTHO05D008178 2.4e-226 788.9 512 74.0
Gohir.D01G219100 Gossypium hirsutum HOM05D006476 ORTHO05D008178 4.0e-226 788.1 503 73.8
TAR633G1736 Trochodendron aralioides HOM05D006476 ORTHO05D008178 4.0e-226 788.1 512 72.7
GSVIVG01030297001 Vitis vinifera HOM05D006476 ORTHO05D008178 1.2e-225 786.6 507 75.1
Sed0000477 Sechium edule HOM05D006476 ORTHO05D008178 1.5e-225 786.2 502 75.1
CiPaw.10G160000 Carya illinoinensis HOM05D006476 ORTHO05D008178 2.6e-225 785.4 491 75.4
COL.COLO4_14474 Corchorus olitorius HOM05D006476 ORTHO05D008178 9.9e-225 783.5 514 71.4
FAN14G4129 Fragaria x ananassa HOM05D006476 ORTHO05D008178 4.9e-224 781.2 522 72.4
Cfa017133 Carpinus fangiana HOM05D006476 ORTHO05D008178 8.4e-224 780.4 493 75.3
Haze_21064 Corylus avellana HOM05D006476 ORTHO05D008178 1.1e-223 780.0 493 75.1
Duzib093G1646 Durio zibethinus HOM05D006476 ORTHO05D008178 1.9e-223 779.2 503 72.8
Cpa.g.sc162.36 Carica papaya HOM05D006476 ORTHO05D008178 9.3e-223 776.9 503 73.2
Prupe.6G283400 Prunus persica HOM05D006476 ORTHO05D008178 1.2e-222 776.5 512 73.0
Sabra16G0118700 Salix brachista HOM05D006476 ORTHO05D008178 1.6e-222 776.2 543 68.9
CSS0013060 Camellia sinensis var. sinensis HOM05D006476 ORTHO05D008178 1.8e-221 772.7 512 72.1
CSS0023949 Camellia sinensis var. sinensis HOM05D006476 ORTHO05D008178 1.8e-221 772.7 512 72.1
Nn2g10977 Nelumbo nucifera HOM05D006476 ORTHO05D008178 1.8e-221 772.7 512 72.3
TWI53G1048 Tripterygium wilfordii HOM05D006476 ORTHO05D008178 2.3e-221 772.3 486 74.9
ClCG10G022410 Citrullus lanatus HOM05D006476 ORTHO05D008178 3.9e-221 771.5 522 70.9
HanXRQChr10g0287121 Helianthus annuus HOM05D006476 ORTHO05D008178 3.3e-220 768.5 505 70.9
MD12G1177900 Malus domestica HOM05D006476 ORTHO05D008178 1.3e-219 766.5 514 72.4
Peaxi162Scf01132g00347 Petunia axillaris HOM05D006476 ORTHO05D008178 1.4e-218 763.1 445 82.7
THA.LOC104816184 Tarenaya hassleriana HOM05D006476 ORTHO05D008178 4.0e-218 761.5 514 69.8
ECA247G0212 Erigeron canadensis HOM05D006476 ORTHO05D008178 9.0e-218 760.4 516 68.6
Thhalv10013251m.g Eutrema salsugineum HOM05D006476 ORTHO05D008178 1.5e-217 759.6 502 71.5
Eucgr.A00607 Eucalyptus grandis HOM05D006476 ORTHO05D008178 2.0e-217 759.2 514 70.6
Lsat_1_v5_gn_9_37301 Lactuca sativa HOM05D006476 ORTHO05D008178 3.4e-217 758.4 502 70.3
Sp6g40850 Schrenkiella parvula HOM05D006476 ORTHO05D008178 4.5e-217 758.1 502 71.3
AL6G10460 Arabidopsis lyrata HOM05D006476 ORTHO05D008178 7.6e-217 757.3 502 71.1
BcaB01g06237 Brassica carinata HOM05D006476 ORTHO05D008178 1.0e-216 756.9 496 71.6
Carub.0006s0024 Capsella rubella HOM05D006476 ORTHO05D008178 1.0e-216 756.9 513 70.2
Sc07g0006480 Simmondsia chinensis HOM05D006476 ORTHO05D008178 1.0e-216 756.9 499 71.7
CARHR211940 Cardamine hirsuta HOM05D006476 ORTHO05D008178 2.2e-216 755.7 512 69.5
Manes.09G110300 Manihot esculenta HOM05D006476 ORTHO05D008178 8.4e-216 753.8 504 70.4
CANSAT35G1014 Cannabis sativa HOM05D006476 ORTHO05D008178 1.4e-215 753.1 501 71.5
AT5G01590 Arabidopsis thaliana HOM05D006476 ORTHO05D008178 6.0e-214 747.7 510 69.8
Aqoxy1G01315 Aquilegia oxysepala HOM05D006476 ORTHO05D008178 1.0e-213 746.9 519 68.0
CDE04G2527 Ceratophyllum demersum HOM05D006476 ORTHO05D008178 1.8e-213 746.1 510 69.8
Aa31LG1G23210 Aethionema arabicum HOM05D006476 ORTHO05D008178 6.7e-213 744.2 492 70.3
BraA03t09413Z Brassica rapa HOM05D006476 ORTHO05D008178 8.7e-213 743.8 493 70.6
A03p00230 Brassica napus HOM05D006476 ORTHO05D008178 1.1e-212 743.4 492 70.5
Ciclev10011480m.g Citrus clementina HOM05D006476 ORTHO05D008178 1.1e-212 743.4 507 69.8
MELO3C009137.2 Cucumis melo HOM05D006476 ORTHO05D008178 1.5e-212 743.0 512 69.7
C03p00370 Brassica napus HOM05D006476 ORTHO05D008178 2.5e-212 742.3 491 70.7
PSO765G0213 Papaver somniferum HOM05D006476 ORTHO05D008178 2.5e-212 742.3 509 69.9
PSO349G0327 Papaver somniferum HOM05D006476 ORTHO05D008178 7.4e-212 740.7 509 69.7
Atru.chr8.2316 Acer truncatum HOM05D006476 ORTHO05D008178 9.6e-212 740.3 500 69.6
BcaB01g06105 Brassica carinata HOM05D006476 ORTHO05D008178 9.6e-212 740.3 491 70.7
BolC3t12605H Brassica oleracea HOM05D006476 ORTHO05D008178 9.6e-212 740.3 491 70.7
CsaV3_3G033460 Cucumis sativus L. HOM05D006476 ORTHO05D008178 1.6e-211 739.6 498 69.9
Lj3g0015173 Lotus japonicus HOM05D006476 ORTHO05D008178 1.8e-210 736.1 504 68.5
Lalb_Chr12g0207111 Lupinus albus HOM05D006476 ORTHO05D008178 3.1e-210 735.3 502 70.5
Ah.12g058950 Amaranthus hybridus HOM05D006476 ORTHO05D008178 1.2e-209 733.4 509 67.4
EL10Ac5g12509 Beta vulgaris HOM05D006476 ORTHO05D008178 7.2e-207 724.2 502 68.5
Lj3A863T42 Lonicera japonica HOM05D006476 ORTHO05D008178 2.7e-206 722.2 449 74.4
arahy.Tifrunner.gnm1.ann1.39JBYW Arachis hypogaea HOM05D006476 ORTHO05D008178 6.1e-206 721.1 525 65.1
arahy.Tifrunner.gnm1.ann1.86RN6H Arachis hypogaea HOM05D006476 ORTHO05D008178 1.1e-204 716.8 521 65.3
Hund10946 Selenicereus undatus HOM05D006476 ORTHO05D008178 1.5e-204 716.5 498 66.9
Oeu038728.1 Olea europaea HOM05D006476 ORTHO05D008178 1.0e-200 703.7 508 67.9
Glyma.01G124200 Glycine max HOM05D006476 ORTHO05D008178 7.2e-199 697.6 507 64.7
CAN.G168.26 Capsicum annuum HOM05D006476 ORTHO05D008178 2.7e-198 695.7 435 77.9
Phvul.010G065700 Phaseolus vulgaris HOM05D006476 ORTHO05D008178 3.3e-196 688.7 516 63.6
ATR0789G002 Amborella trichopoda HOM05D006476 ORTHO05D008178 9.7e-196 687.2 502 65.5
VMungo0331G1781 Vigna mungo HOM05D006476 ORTHO05D008178 1.7e-195 686.4 516 63.2
DCAR_018674 Daucus carota HOM05D006476 ORTHO05D008178 1.0e-192 677.2 426 73.0
AUR62030513 Chenopodium quinoa HOM05D006476 ORTHO05D008178 1.4e-191 673.3 489 66.7
SGA_v2.0_scaffold110G31194 Striga asiatica HOM05D006476 ORTHO05D008178 2.1e-190 669.5 517 62.7
HPP92_001920 Vanilla planifolia HOM05D006476 ORTHO05D008178 1.9e-183 646.4 513 62.4
Dinv12144 Davidia involucrata HOM05D006476 ORTHO05D008178 3.6e-182 642.1 353 83.3
Actinidia29077 Actinidia chinensis HOM05D006476 ORTHO05D008178 1.7e-179 633.3 513 60.4
Medtr4g014600 Medicago truncatula HOM05D006476 ORTHO05D008178 1.1e-175 620.5 501 59.3
TPR.G5241 Trifolium pratense HOM05D006476 ORTHO05D008178 2.5e-175 619.4 512 58.4
Ca_20338_v3 Cicer arietinum L. HOM05D006476 ORTHO05D008178 1.8e-170 603.2 506 58.9
Psat7g247200 Pisum sativum HOM05D006476 ORTHO05D008178 1.5e-167 593.6 474 58.6
Glyma.03G050400 Glycine max HOM05D006476 ORTHO05D008178 3.6e-158 562.4 407 66.3
Pp3c1_41280 Physcomitrium patens HOM05D006476 ORTHO05D008178 1.6e-121 440.7 400 53.0
AagrBONN_evm.TU.Sc2ySwM_344.2114 Anthoceros agrestis HOM05D006476 ORTHO05D008178 3.0e-120 436.4 395 51.4
Mapoly0062s0099 Marchantia polymorpha HOM05D006476 ORTHO05D008178 7.3e-119 431.8 385 53.8
arahy.Tifrunner.gnm1.ann1.36T17X Arachis hypogaea HOM05D006476 ORTHO05D008178 2.2e-115 420.2 257 73.9
SEGI_26269 Sequoiadendron giganteum HOM05D006476 ORTHO05D008178 1.8e-112 410.6 462 46.3
SMO364G0439 Selaginella moellendorffii HOM05D006476 ORTHO05D008178 3.9e-112 409.5 391 50.1
AUR62030780 Chenopodium quinoa HOM05D006476 ORTHO05D008178 2.9e-75 287.0 172 75.6
Oeu061560.1 Olea europaea HOM05D006476 ORTHO05D008178 2.8e-70 270.4 162 75.3
MD04G1164400 Malus domestica HOM05D006476 ORTHO05D008178 7.0e-53 212.6 120 81.7
MD04G1164300 Malus domestica HOM05D006476 ORTHO05D008178 4.9e-38 163.3 112 69.6
CBR_g7951 Chara braunii HOM05D006476 ORTHO05D008178 1.6e-36 158.3 310 31.9
Haze_21099 Corylus avellana HOM05D006476 ORTHO05D008178 3.4e-31 140.6 122 55.7
ATR0810G038 Amborella trichopoda HOM05D006476 ORTHO05D008178 5.8e-23 113.2 89 56.2
RcHm_v2.0_Chr3g0461921 Rosa chinensis HOM05D006476 ORTHO05D008178 4.4e-15 87.0 56 67.9
BcaNung03295 Brassica carinata HOM05D006476 ORTHO05D008178 4.9e-14 83.6 76 53.9
C09p74660 Brassica napus HOM05D000872 ORTHO05D000777 4.9e-14 83.6 76 53.9
BolC9t60200H Brassica oleracea HOM05D006476 ORTHO05D008178 4.9e-14 83.6 76 53.9
PRCOL_00007100 Prasinoderma coloniale HOM05D006476 ORTHO05D008178 4.4e-07 60.5 99 30.3
MCO15G063 Micromonas commoda HOM05D006476 ORTHO05D008178 7.6e-07 59.7 58 36.2


User provided reference genes

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