Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen09g006900 Solanum pennellii HOM05D008437 ORTHO05D010577 7.5e-180 633.6 301 100.0
Sopen09g006880 Solanum pennellii HOM05D008437 ORTHO05D010577 3.1e-165 585.1 328 86.9
Sopen05g009680 Solanum pennellii HOM05D008437 ORTHO05D010577 8.9e-165 583.6 328 86.9
Nitab4.5_0004827g0010 Nicotiana tabacum HOM05D008437 ORTHO05D010577 7.7e-108 394.4 306 63.7
Nitab4.5_0000008g0620 Nicotiana tabacum HOM05D008437 ORTHO05D010577 3.2e-106 389.0 307 64.2
Peaxi162Scf00141g00138 Petunia axillaris HOM05D008437 ORTHO05D010577 4.4e-103 378.6 306 59.8
Sopen09g006830 Solanum pennellii HOM05D008437 ORTHO05D010577 2.5e-98 362.8 307 57.7
Sopen03g021420 Solanum pennellii HOM05D008437 ORTHO05D010577 1.6e-97 360.1 307 57.7
Solyc09g012010.1 Solanum lycopersicum HOM05D008437 ORTHO05D010577 1.0e-96 357.5 307 57.3
Solyc03g078530.1 Solanum lycopersicum HOM05D008437 ORTHO05D010577 1.4e-96 357.1 307 57.3
PGSC0003DMG400046101 Solanum tuberosum HOM05D008437 ORTHO05D010577 8.8e-96 354.4 307 56.4
Peaxi162Scf00141g00118 Petunia axillaris HOM05D008437 ORTHO05D010577 5.7e-87 325.1 267 58.8
Solyc09g012020.1 Solanum lycopersicum HOM05D008437 ORTHO05D010577 4.5e-84 315.5 310 52.6
Sopen09g006840 Solanum pennellii HOM05D008437 ORTHO05D010577 3.2e-82 309.3 310 52.3
Hma1.2p1_0244F.1_g101190 Hydrangea macrophylla HOM05D008437 ORTHO05D010577 1.9e-74 283.5 306 48.0
Atru.chr8.2150 Acer truncatum HOM05D008437 ORTHO05D010577 1.1e-66 257.7 318 43.7
Atru.chr8.2192 Acer truncatum HOM05D008437 ORTHO05D010577 1.5e-66 257.3 318 43.7
QL07p036071 Quercus lobata HOM05D008437 ORTHO05D010577 3.4e-63 246.1 296 42.6
Rhsim05G0205500 Rhododendron simsii HOM05D008437 ORTHO05D010577 3.5e-60 236.1 303 39.9
Atru.chr8.2145 Acer truncatum HOM05D008437 ORTHO05D010577 2.5e-58 229.9 295 41.4
Atru.chr8.2191 Acer truncatum HOM05D008437 ORTHO05D010577 7.3e-58 228.4 296 40.5
Atru.chr8.2149 Acer truncatum HOM05D008437 ORTHO05D010577 9.5e-58 228.0 296 40.9
COL.COLO4_14612 Corchorus olitorius HOM05D006607 ORTHO05D008166 2.1e-57 226.9 293 40.3
CSS0044623 Camellia sinensis var. sinensis HOM05D008437 ORTHO05D010577 4.7e-57 225.7 306 39.9
CAN.G284.5 Capsicum annuum HOM05D008437 ORTHO05D010577 1.9e-53 213.8 191 55.0
COL.COLO4_14611 Corchorus olitorius HOM05D008437 ORTHO05D010577 5.4e-53 212.2 330 37.6
Atru.chr8.2190 Acer truncatum HOM05D008437 ORTHO05D010577 2.3e-51 206.8 319 38.2
CAN.G686.11 Capsicum annuum HOM05D008437 ORTHO05D010577 5.1e-51 205.7 174 56.3
Thecc.05G022700 Theobroma cacao HOM05D008437 ORTHO05D010577 3.3e-50 203.0 330 34.8
COL.COLO4_27629 Corchorus olitorius HOM05D008437 ORTHO05D010577 2.8e-49 199.9 304 36.5
DCAR_028831 Daucus carota HOM05D008437 ORTHO05D010577 7.5e-47 191.8 304 36.8
Aqoxy1G00725 Aquilegia oxysepala HOM05D008437 ORTHO05D010577 3.9e-43 179.5 284 34.9
Gorai.009G452600 Gossypium raimondii HOM05D008437 ORTHO05D010577 2.8e-41 173.3 305 34.1
Gohir.D05G386150 Gossypium hirsutum HOM05D008437 ORTHO05D010577 3.6e-41 172.9 305 34.1
CANSAT35G0292 Cannabis sativa HOM05D008437 ORTHO05D010577 1.4e-40 171.0 304 35.5
Gohir.A04G003750 Gossypium hirsutum HOM05D008437 ORTHO05D010577 9.9e-39 164.9 306 33.0
Solyc03g078560.1 Solanum lycopersicum HOM05D008437 ORTHO05D010577 2.9e-38 163.3 190 46.8
Actinidia13782 Actinidia chinensis HOM05D008437 ORTHO05D010577 1.6e-36 157.5 192 41.1
Atru.chr8.2185 Acer truncatum HOM05D008437 ORTHO05D010577 6.9e-32 142.1 167 41.3
Atru.chr8.2143 Acer truncatum HOM05D008437 ORTHO05D010577 1.7e-30 137.5 155 40.6
CANSAT35G0930 Cannabis sativa HOM05D008437 ORTHO05D010577 2.3e-27 127.1 326 31.3
ECA238G0023 Erigeron canadensis HOM05D012740 ORTHO05D010577 3.3e-26 123.2 289 29.8
Actinidia34726 Actinidia chinensis HOM05D007726 ORTHO05D008819 1.6e-25 120.9 266 33.1
CiPaw.08G003800 Carya illinoinensis HOM05D007726 ORTHO05D008819 6.2e-25 119.0 273 33.3
Gorai.009G452800 Gossypium raimondii HOM05D008437 ORTHO05D010577 6.2e-25 119.0 148 39.2
Dinv41784 Davidia involucrata HOM05D007726 ORTHO05D008819 2.4e-24 117.1 285 31.9
Dinv24637 Davidia involucrata HOM05D007726 ORTHO05D008819 5.3e-24 115.9 285 30.5
Haze_21353 Corylus avellana HOM05D007726 ORTHO05D008819 9.0e-24 115.2 282 29.8
CiPaw.07G234400 Carya illinoinensis HOM05D007726 ORTHO05D008819 1.2e-23 114.8 293 29.7
Haze_21347 Corylus avellana HOM05D007726 ORTHO05D008819 2.6e-23 113.6 281 29.5
TAR381G1565 Trochodendron aralioides HOM05D007726 ORTHO05D008819 3.4e-23 113.2 282 33.0
Cfa012989 Carpinus fangiana HOM05D007726 ORTHO05D008819 4.5e-23 112.8 267 30.3
FvH4_5g31300 Fragaria vesca HOM05D007726 ORTHO05D008819 9.9e-23 111.7 282 29.1
FAN18G2255 Fragaria x ananassa HOM05D007726 ORTHO05D008819 9.9e-23 111.7 282 29.1
RcHm_v2.0_Chr7g0231221 Rosa chinensis HOM05D007726 ORTHO05D008819 9.9e-23 111.7 271 30.3
MD15G1404600 Malus domestica HOM05D007726 ORTHO05D008819 2.9e-22 110.2 284 29.6
CANSAT25G2565 Cannabis sativa HOM05D007726 ORTHO05D008819 4.9e-22 109.4 292 29.1
Oeu000542.1 Olea europaea HOM05D007726 ORTHO05D008819 1.1e-21 108.2 289 29.1
PGSC0003DMG400020354 Solanum tuberosum HOM05D000312 ORTHO05D000221 1.4e-21 107.8 126 49.2
Nn2g13599 Nelumbo nucifera HOM05D008437 ORTHO05D008819 3.2e-21 106.7 280 29.3
Prupe.1G556700 Prunus persica HOM05D007726 ORTHO05D008819 3.2e-21 106.7 286 28.3
QL02p023649 Quercus lobata HOM05D007726 ORTHO05D008819 3.2e-21 106.7 279 28.3
RcHm_v2.0_Chr7g0225531 Rosa chinensis HOM05D007726 ORTHO05D008819 3.2e-21 106.7 294 28.9
Hund16767 Selenicereus undatus HOM05D007726 ORTHO05D008819 4.2e-21 106.3 295 29.5
RcHm_v2.0_Chr7g0226391 Rosa chinensis HOM05D007726 ORTHO05D008819 5.4e-21 105.9 282 27.3
Ciclev10020327m.g Citrus clementina HOM05D007726 ORTHO05D008819 2.7e-20 103.6 267 28.8
Cpa.g.sc30.96 Carica papaya HOM05D007726 ORTHO05D008819 3.5e-20 103.2 301 25.9
Lj7A388T90 Lonicera japonica HOM05D007726 ORTHO05D008819 3.5e-20 103.2 222 32.9
TWI14G0263 Tripterygium wilfordii HOM05D007726 ORTHO05D008819 3.5e-20 103.2 302 27.2
Hma1.2p1_0026F.1_g016960 Hydrangea macrophylla HOM05D012740 ORTHO05D010577 4.6e-20 102.8 273 29.7
Lj7C388T5 Lonicera japonica HOM05D007726 ORTHO05D008819 4.6e-20 102.8 282 28.7
Cc10_g11210 Coffea canephora HOM05D007726 ORTHO05D008819 6.0e-20 102.4 293 28.3
CAN.G284.6 Capsicum annuum HOM05D008437 ORTHO05D010577 2.3e-19 100.5 106 49.1
CSS0013132 Camellia sinensis var. sinensis HOM05D007726 ORTHO05D008819 5.1e-19 99.4 278 28.8
Ciclev10020371m.g Citrus clementina HOM05D007726 ORTHO05D008819 6.7e-19 99.0 281 29.9
Sabra13G0090000 Salix brachista HOM05D007726 ORTHO05D008819 1.1e-18 98.2 302 25.8
CsaV3_7G024580 Cucumis sativus L. HOM05D007726 ORTHO05D008819 1.5e-18 97.8 275 28.7
ECA234G1595 Erigeron canadensis HOM05D007726 ORTHO05D008819 2.5e-18 97.1 278 26.6
MELO3C024088.2 Cucumis melo HOM05D007726 ORTHO05D008819 3.3e-18 96.7 275 29.1
MSTRG.25451 Avicennia marina HOM05D007726 ORTHO05D008819 5.6e-18 95.9 289 27.7
Eucgr.F02895 Eucalyptus grandis HOM05D007726 ORTHO05D008819 9.6e-18 95.1 290 27.6
ClCG09G010150 Citrullus lanatus HOM05D007726 ORTHO05D008819 2.1e-17 94.0 275 28.4
Lsat_1_v5_gn_4_28421 Lactuca sativa HOM05D007726 ORTHO05D008819 3.7e-17 93.2 290 24.8
PSO339G1195 Papaver somniferum HOM05D007726 ORTHO05D008819 6.2e-17 92.4 308 26.9
Sed0014390 Sechium edule HOM05D007726 ORTHO05D008819 8.1e-17 92.0 268 27.6
AUR62023529 Chenopodium quinoa HOM05D007726 ORTHO05D008819 2.4e-16 90.5 316 28.5
HanXRQChr17g0565271 Helianthus annuus HOM05D007726 ORTHO05D008819 2.0e-15 87.4 292 26.4
Hund16766 Selenicereus undatus HOM05D007726 ORTHO05D008819 2.6e-15 87.0 281 29.5
TAR629G0100 Trochodendron aralioides HOM05D008437 ORTHO05D008819 5.8e-15 85.9 279 28.3
HanXRQChr17g0558011 Helianthus annuus HOM05D007726 ORTHO05D008819 7.6e-15 85.5 275 28.4
TAR185G0005 Trochodendron aralioides HOM05D008437 ORTHO05D008819 7.6e-15 85.5 272 28.7
Lsat_1_v5_gn_8_140181 Lactuca sativa HOM05D007726 ORTHO05D008819 1.3e-14 84.7 282 27.3
AUR62004583 Chenopodium quinoa HOM05D007726 ORTHO05D008819 2.2e-14 84.0 317 27.4
Nn8g40182 Nelumbo nucifera HOM05D008437 ORTHO05D008819 2.2e-14 84.0 286 27.3
TAR575G0001 Trochodendron aralioides HOM05D008437 ORTHO05D008819 3.8e-14 83.2 288 27.4
PSO384G2295 Papaver somniferum HOM05D007726 ORTHO05D008819 9.3e-13 78.6 209 28.2
Lsat_1_v5_gn_2_120541 Lactuca sativa HOM05D012740 ORTHO05D010577 1.2e-12 78.2 244 26.6
Lsat_1_v5_gn_6_37720 Lactuca sativa HOM05D012740 ORTHO05D010577 1.2e-12 78.2 288 27.4
CiPaw.03G276600 Carya illinoinensis HOM05D000007 ORTHO05D000521 1.3e-11 74.7 271 27.3
A03p35500 Brassica napus HOM05D000007 ORTHO05D000521 3.0e-11 73.6 265 25.7
BraA03t12727Z Brassica rapa HOM05D000007 ORTHO05D000521 3.0e-11 73.6 265 25.7
Migut.C01272 Erythranthe guttata HOM05D007726 ORTHO05D008819 3.0e-11 73.6 264 26.1
THA.LOC104819049 Tarenaya hassleriana HOM05D000007 ORTHO05D000521 3.0e-11 73.6 280 23.9
Aqoxy6G01044 Aquilegia oxysepala HOM05D008437 ORTHO05D021355 3.9e-11 73.2 271 22.5
C03p43160 Brassica napus HOM05D000007 ORTHO05D000521 5.1e-11 72.8 267 25.1
BolC3t16585H Brassica oleracea HOM05D000007 ORTHO05D000521 5.1e-11 72.8 267 25.1
Cfa014275 Carpinus fangiana HOM05D000007 ORTHO05D000521 5.1e-11 72.8 266 25.9
GSVIVG01008137001 Vitis vinifera HOM05D000007 ORTHO05D007631 5.1e-11 72.8 191 29.3
Nn1g03296 Nelumbo nucifera HOM05D000007 ORTHO05D003666 1.1e-10 71.6 271 27.3
Dinv31069 Davidia involucrata HOM05D000007 ORTHO05D000676 1.5e-10 71.2 231 27.7
Cfa012985 Carpinus fangiana HOM05D007726 ORTHO05D008819 9.6e-10 68.6 149 32.2
Aqoxy1G00726 Aquilegia oxysepala HOM05D008437 ORTHO05D010577 1.3e-09 68.2 147 29.3
Atru.chr1.2429 Acer truncatum HOM05D000007 ORTHO05D000017 1.6e-09 67.8 307 25.1
Duzib211G0565 Durio zibethinus HOM05D000007 ORTHO05D000521 2.1e-09 67.4 283 23.3
CAN.G696.5 Capsicum annuum HOM05D001580 ORTHO05D000017 3.7e-09 66.6 264 23.9
TAR371G0093 Trochodendron aralioides HOM05D000007 ORTHO05D007252 3.7e-09 66.6 212 28.3
CSS0006076 Camellia sinensis var. sinensis HOM05D006664 ORTHO05D009007 1.1e-08 65.1 302 24.8
CSS0029898 Camellia sinensis var. sinensis HOM05D006664 ORTHO05D009007 1.1e-08 65.1 302 24.8
Migut.A00619 Erythranthe guttata HOM05D006664 ORTHO05D009007 1.4e-08 64.7 253 25.3
PGSC0003DMG400013435 Solanum tuberosum HOM05D000007 ORTHO05D005385 1.8e-08 64.3 205 26.3
CiPaw.03G156000 Carya illinoinensis HOM05D000007 ORTHO05D000521 2.4e-08 63.9 245 24.5
arahy.Tifrunner.gnm1.ann1.J7810K Arachis hypogaea HOM05D000007 ORTHO05D000017 4.0e-08 63.2 250 27.2
DCAR_003372 Daucus carota HOM05D000007 ORTHO05D000017 9.0e-08 62.0 152 29.6
Lsat_1_v5_gn_6_37680 Lactuca sativa HOM05D012740 ORTHO05D010577 1.2e-07 61.6 185 27.6
Rhsim04G0093700 Rhododendron simsii HOM05D000007 ORTHO05D009073 1.2e-07 61.6 205 29.3
Cc04_g11950 Coffea canephora HOM05D000007 ORTHO05D000017 2.0e-07 60.8 208 25.0
QL07p033575 Quercus lobata HOM05D000007 ORTHO05D003666 2.0e-07 60.8 270 24.4
Lj6C54G11 Lonicera japonica HOM05D006664 ORTHO05D009007 2.6e-07 60.5 93 35.5
Peaxi162Scf00469g00087 Petunia axillaris HOM05D000007 ORTHO05D000039 2.6e-07 60.5 287 24.0
TAR371G0533 Trochodendron aralioides HOM05D000007 ORTHO05D007252 2.6e-07 60.5 227 26.4
Eucgr.K01324 Eucalyptus grandis HOM05D000007 ORTHO05D003666 1.0e-06 58.5 276 23.2
MD17G1263300 Malus domestica HOM05D000007 ORTHO05D000521 1.0e-06 58.5 157 28.0
MBI19_g35552_MAGBIO Magnolia biondii HOM05D000007 ORTHO05D000017 1.3e-06 58.2 220 25.0
Rhsim04G0086800 Rhododendron simsii HOM05D000171 ORTHO05D000101 1.3e-06 58.2 284 26.1
RcHm_v2.0_Chr4g0419911 Rosa chinensis HOM05D000007 ORTHO05D000521 2.2e-06 57.4 244 23.0
SGA_v2.0_scaffold227G43212 Striga asiatica HOM05D006664 ORTHO05D009007 2.9e-06 57.0 273 22.7
THA.LOC104818825 Tarenaya hassleriana HOM05D000007 ORTHO05D000017 2.9e-06 57.0 226 26.5
Thhalv10009451m.g Eutrema salsugineum HOM05D000171 ORTHO05D000101 3.8e-06 56.6 225 24.0
Migut.N00548 Erythranthe guttata HOM05D000007 ORTHO05D000017 4.9e-06 56.2 216 26.9
FvH4_4g32891 Fragaria vesca HOM05D000007 ORTHO05D005026 4.9e-06 56.2 212 26.4
Oeu011073.1 Olea europaea HOM05D000007 ORTHO05D000039 6.5e-06 55.8 275 23.3
PSO832G3025 Papaver somniferum HOM05D000007 ORTHO05D000676 6.5e-06 55.8 252 24.2
Cc00_g07130 Coffea canephora HOM05D000007 ORTHO05D000017 8.4e-06 55.5 221 24.9


User provided reference genes

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