Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen09g006700 Solanum pennellii HOM05D006079 ORTHO05D008156 1.1e-248 862.8 432 100.0
Solyc09g011880.3 Solanum lycopersicum HOM05D006079 ORTHO05D008156 3.5e-247 857.8 432 99.1
PGSC0003DMG400020333 Solanum tuberosum HOM05D006079 ORTHO05D008156 3.8e-241 837.8 434 96.3
Nitab4.5_0007539g0010 Nicotiana tabacum HOM05D006079 ORTHO05D008156 9.9e-226 786.6 433 91.0
Nitab4.5_0000008g0510 Nicotiana tabacum HOM05D006079 ORTHO05D008156 2.1e-223 778.9 433 90.5
Peaxi162Scf01352g00015 Petunia axillaris HOM05D006079 ORTHO05D008156 2.8e-220 768.5 424 89.4
Cfa017268 Carpinus fangiana HOM05D006079 ORTHO05D008156 2.6e-186 655.6 432 73.8
CANSAT35G1087 Cannabis sativa HOM05D006079 ORTHO05D008156 1.7e-185 652.9 432 74.5
Manes.08G086700 Manihot esculenta HOM05D006079 ORTHO05D008156 4.2e-184 648.3 432 72.9
Haze_20934 Corylus avellana HOM05D006079 ORTHO05D008156 2.7e-183 645.6 438 73.3
Prupe.6G269000 Prunus persica HOM05D006079 ORTHO05D008156 1.8e-182 642.9 432 74.1
PGR031G3170 Punica granatum HOM05D006079 ORTHO05D008156 1.5e-181 639.8 432 72.7
Dinv35521 Davidia involucrata HOM05D006079 ORTHO05D008156 2.0e-181 639.4 435 72.9
CSS0045639 Camellia sinensis var. sinensis HOM05D006079 ORTHO05D008156 2.6e-181 639.0 435 73.3
QL07p036333 Quercus lobata HOM05D006079 ORTHO05D008156 3.3e-181 638.6 436 72.9
Actinidia13795 Actinidia chinensis HOM05D006079 ORTHO05D008156 8.3e-180 634.0 435 73.6
FAN02G2404 Fragaria x ananassa HOM05D006079 ORTHO05D008156 8.3e-180 634.0 432 73.1
Glyma.07G143100 Glycine max HOM05D006079 ORTHO05D008156 1.8e-179 632.9 432 72.9
MD12G1158600 Malus domestica HOM05D006079 ORTHO05D008156 4.1e-179 631.7 432 72.2
COL.COLO4_14632 Corchorus olitorius HOM05D006079 ORTHO05D008156 9.1e-179 630.6 432 72.2
Cpa.g.sc56.97 Carica papaya HOM05D006079 ORTHO05D008156 1.2e-178 630.2 427 73.5
FAN14G2872 Fragaria x ananassa HOM05D006079 ORTHO05D008156 1.2e-178 630.2 432 72.9
FvH4_6g12250 Fragaria vesca HOM05D006079 ORTHO05D008156 1.6e-178 629.8 432 72.7
FAN05G0163 Fragaria x ananassa HOM05D006079 ORTHO05D008156 2.7e-178 629.0 432 72.9
CiPaw.10G153700 Carya illinoinensis HOM05D006079 ORTHO05D008156 5.9e-178 627.9 433 70.4
Psat3g135200 Pisum sativum HOM05D006079 ORTHO05D008156 5.9e-178 627.9 435 72.2
RcHm_v2.0_Chr3g0464051 Rosa chinensis HOM05D006079 ORTHO05D008156 5.9e-178 627.9 432 72.2
FAN09G0680 Fragaria x ananassa HOM05D006079 ORTHO05D008156 3.8e-177 625.2 432 72.5
Duzib128G0993 Durio zibethinus HOM05D006079 ORTHO05D008156 8.5e-177 624.0 432 71.5
MSTRG.5605 Avicennia marina HOM05D006079 ORTHO05D008156 1.1e-176 623.6 433 73.7
Gorai.012G110900 Gossypium raimondii HOM05D006079 ORTHO05D008156 1.5e-176 623.2 432 68.8
Eucgr.B02761 Eucalyptus grandis HOM05D006079 ORTHO05D008156 2.5e-176 622.5 432 71.3
GSVIVG01034026001 Vitis vinifera HOM05D006079 ORTHO05D008156 4.2e-176 621.7 432 72.2
Cc06_g01790 Coffea canephora HOM05D006079 ORTHO05D008156 5.5e-176 621.3 435 72.0
Atru.chr8.2129 Acer truncatum HOM05D006079 ORTHO05D008156 7.2e-176 620.9 436 69.5
Thecc.05G024000 Theobroma cacao HOM05D006079 ORTHO05D008156 1.2e-175 620.2 432 71.8
Ca_09158_v3 Cicer arietinum L. HOM05D006079 ORTHO05D008156 2.7e-175 619.0 433 72.1
Gohir.A04G087500 Gossypium hirsutum HOM05D006079 ORTHO05D008156 3.6e-175 618.6 432 69.2
Nn2g13580 Nelumbo nucifera HOM05D006079 ORTHO05D008156 1.8e-174 616.3 433 69.5
Duzib093G0682 Durio zibethinus HOM05D006079 ORTHO05D008156 4.0e-174 615.1 430 68.4
TWI77G0608 Tripterygium wilfordii HOM05D006079 ORTHO05D008156 2.0e-173 612.8 432 70.1
arahy.Tifrunner.gnm1.ann1.3KU04F Arachis hypogaea HOM05D006079 ORTHO05D008156 2.6e-173 612.5 434 72.6
Ciclev10011790m.g Citrus clementina HOM05D006079 ORTHO05D008156 9.8e-173 610.5 435 71.5
Lj2A83T75 Lonicera japonica HOM05D006079 ORTHO05D008156 1.1e-171 607.1 407 75.4
Lj1g0026135 Lotus japonicus HOM05D006079 ORTHO05D008156 1.1e-171 607.1 438 70.1
Lalb_Chr01g0022871 Lupinus albus HOM05D006079 ORTHO05D008156 1.4e-171 606.7 434 71.2
ClCG04G007320 Citrullus lanatus HOM05D006079 ORTHO05D008156 2.4e-171 605.9 432 70.6
Gohir.D04G127900 Gossypium hirsutum HOM05D006079 ORTHO05D008156 2.4e-171 605.9 432 67.8
Phvul.008G111400 Phaseolus vulgaris HOM05D006079 ORTHO05D008156 1.2e-170 603.6 437 70.3
Medtr7g066250 Medicago truncatula HOM05D006079 ORTHO05D008156 1.6e-170 603.2 434 70.3
SGA_v2.0_scaffold85G26780 Striga asiatica HOM05D006079 ORTHO05D008156 6.6e-169 597.8 434 68.0
CsaV3_4G025930 Cucumis sativus L. HOM05D006079 ORTHO05D008156 8.6e-169 597.4 432 69.7
Sc25g0003370 Simmondsia chinensis HOM05D006079 ORTHO05D008156 1.9e-168 596.3 432 68.8
arahy.Tifrunner.gnm1.ann1.GZPT0A Arachis hypogaea HOM05D006079 ORTHO05D008156 5.5e-168 594.7 458 68.1
Sed0002088 Sechium edule HOM05D006079 ORTHO05D008156 5.5e-168 594.7 432 69.0
MELO3C003219.2 Cucumis melo HOM05D006079 ORTHO05D008156 1.2e-167 593.6 432 69.2
ECA236G0495 Erigeron canadensis HOM05D006079 ORTHO05D008156 1.0e-166 590.5 447 64.9
Sabra06G0073200 Salix brachista HOM05D006079 ORTHO05D008156 5.2e-166 588.2 433 67.2
Potri.006G095400 Populus trichocarpa HOM05D006079 ORTHO05D008156 7.5e-165 584.3 433 66.5
PSO585G0039 Papaver somniferum HOM05D006079 ORTHO05D008156 2.2e-164 582.8 414 67.6
Oeu015011.1 Olea europaea HOM05D006079 ORTHO05D008156 8.3e-164 580.9 407 72.7
HanXRQChr04g0124711 Helianthus annuus HOM05D006079 ORTHO05D008156 3.5e-162 575.5 431 66.1
PSO384G3626 Papaver somniferum HOM05D006079 ORTHO05D008156 3.5e-162 575.5 414 67.1
Migut.J00236 Erythranthe guttata HOM05D006079 ORTHO05D008156 2.9e-161 572.4 434 65.0
THA.LOC104823390 Tarenaya hassleriana HOM05D006079 ORTHO05D008156 2.6e-157 559.3 432 63.7
TAR633G1690 Trochodendron aralioides HOM05D006079 ORTHO05D008156 3.4e-157 558.9 441 63.3
Aqoxy1G00752 Aquilegia oxysepala HOM05D006079 ORTHO05D008156 3.5e-154 548.9 432 64.1
Rhsim05G0203500 Rhododendron simsii HOM05D006079 ORTHO05D008156 4.6e-154 548.5 351 76.1
CAN.G338.65 Capsicum annuum HOM05D006079 ORTHO05D008156 6.0e-154 548.1 304 91.1
Ah.11g045330 Amaranthus hybridus HOM05D006079 ORTHO05D008156 1.0e-153 547.4 438 63.9
BcaB02g09226 Brassica carinata HOM05D006079 ORTHO05D008156 8.6e-153 544.3 433 60.0
BcaC02g11943 Brassica carinata HOM05D006079 ORTHO05D008156 8.6e-153 544.3 433 60.3
CARHR132560 Cardamine hirsuta HOM05D006079 ORTHO05D008156 8.6e-153 544.3 432 60.0
Aa31LG5G23170 Aethionema arabicum HOM05D006079 ORTHO05D008156 1.1e-152 543.9 433 61.9
Sp4g20320 Schrenkiella parvula HOM05D006079 ORTHO05D008156 1.5e-152 543.5 432 62.3
AL4G34980 Arabidopsis lyrata HOM05D006079 ORTHO05D008156 2.5e-152 542.7 432 60.6
AT2G38000 Arabidopsis thaliana HOM05D006079 ORTHO05D008156 1.2e-151 540.4 434 60.8
Actinidia29142 Actinidia chinensis HOM05D006079 ORTHO05D008156 1.6e-151 540.0 425 67.3
A05p08000 Brassica napus HOM05D006079 ORTHO05D008156 6.2e-151 538.1 433 60.0
BolC4t22573H Brassica oleracea HOM05D006079 ORTHO05D008156 6.2e-151 538.1 415 61.9
Thhalv10016725m.g Eutrema salsugineum HOM05D006079 ORTHO05D008156 1.1e-150 537.3 433 59.6
AUR62041356 Chenopodium quinoa HOM05D006079 ORTHO05D008156 4.0e-150 535.4 400 67.0
Carub.0004s1997 Capsella rubella HOM05D006079 ORTHO05D008156 3.4e-149 532.3 432 59.0
DCAR_024040 Daucus carota HOM05D006079 ORTHO05D008156 2.2e-148 529.6 465 59.6
BraA05t19766Z Brassica rapa HOM05D006079 ORTHO05D008156 1.4e-147 526.9 421 60.1
Lsat_1_v5_gn_8_82341 Lactuca sativa HOM05D006079 ORTHO05D008156 4.1e-147 525.4 416 67.5
vmacro20226 Vaccinium macrocarpon HOM05D006079 ORTHO05D008156 5.4e-147 525.0 442 63.6
BcaB02g09227 Brassica carinata HOM05D006079 ORTHO05D008156 1.2e-146 523.9 433 58.7
VMungo1383G1007 Vigna mungo HOM05D006079 ORTHO05D008156 2.1e-146 523.1 386 69.9
MBI05_g36624_MAGBIO Magnolia biondii HOM05D006079 ORTHO05D008156 3.5e-146 522.3 329 76.6
EL10Ac5g11535 Beta vulgaris HOM05D006079 ORTHO05D008156 5.6e-144 515.0 433 58.9
CDE04G0224 Ceratophyllum demersum HOM05D006079 ORTHO05D008156 3.1e-142 509.2 420 62.9
ATR0618G129 Amborella trichopoda HOM05D006079 ORTHO05D008156 3.7e-140 502.3 422 61.4
unitig_26.g9105 Utricularia gibba HOM05D006079 ORTHO05D008156 4.1e-139 498.8 404 61.4
Hma1.2p1_0763F.1_g214490 Hydrangea macrophylla HOM05D006079 ORTHO05D008156 2.7e-138 496.1 420 63.3
C04p09660 Brassica napus HOM05D006079 ORTHO05D008156 1.5e-136 490.3 399 59.9
Os05g0316200 Oryza sativa ssp. japonica HOM05D006079 ORTHO05D008156 3.3e-136 489.2 404 63.6
HPP92_006654 Vanilla planifolia HOM05D006079 ORTHO05D008156 4.7e-135 485.3 433 57.0
Gohir.A13G086740 Gossypium hirsutum HOM05D006079 ORTHO05D008156 4.0e-134 482.3 430 58.6
Zm00001eb169630 Zea mays HOM05D006079 ORTHO05D008156 3.8e-132 475.7 403 60.5
SEGI_08405 Sequoiadendron giganteum HOM05D006079 ORTHO05D008156 1.1e-126 457.6 326 70.2
TPR.G29287 Trifolium pratense HOM05D006079 ORTHO05D008156 1.7e-116 423.7 264 79.5
CDE07G0746 Ceratophyllum demersum HOM05D006079 ORTHO05D008156 8.4e-108 394.8 432 51.6
AagrBONN_evm.TU.Sc2ySwM_117.3694 Anthoceros agrestis HOM05D006079 ORTHO05D008156 1.3e-95 354.4 372 48.9
Mapoly0040s0094 Marchantia polymorpha HOM05D006079 ORTHO05D008156 1.2e-90 337.8 415 45.8
Migut.J00237 Erythranthe guttata HOM05D006079 ORTHO05D008156 2.3e-89 333.6 399 46.9
BcaC02g11941 Brassica carinata HOM05D006079 ORTHO05D008156 6.7e-89 332.0 218 69.7
SMO172G0100 Selaginella moellendorffii HOM05D006079 ORTHO05D008156 5.3e-86 322.4 320 55.0
Pp3c16_16710 Physcomitrium patens HOM05D006079 ORTHO05D008156 7.9e-82 308.5 419 43.2
Gohir.D13G085200 Gossypium hirsutum HOM05D006079 ORTHO05D008156 2.3e-73 280.4 213 64.3
HPP92_006629 Vanilla planifolia HOM05D006079 ORTHO05D008156 3.0e-73 280.0 309 48.2
CAN.G686.13 Capsicum annuum HOM05D006079 ORTHO05D008156 1.1e-67 261.5 135 91.9
Gohir.A01G178136 Gossypium hirsutum HOM05D006079 ORTHO05D008156 4.9e-55 219.5 170 61.8
Lsat_1_v5_gn_5_162881 Lactuca sativa HOM05D006079 ORTHO05D008156 3.1e-54 216.9 135 70.4
MD04G1144700 Malus domestica HOM05D006079 ORTHO05D008156 4.1e-54 216.5 159 65.4
Thhalv10017300m.g Eutrema salsugineum HOM05D006079 ORTHO05D008156 5.7e-48 196.1 223 47.1
Gorai.006G157700 Gossypium raimondii HOM05D006079 ORTHO05D008156 2.4e-38 164.1 126 62.7
Gohir.D09G137350 Gossypium hirsutum HOM05D006079 ORTHO05D008156 5.4e-38 162.9 126 62.7
QL07p036284 Quercus lobata HOM05D006079 ORTHO05D338014 7.8e-37 159.1 106 67.9
Cc02_g12960 Coffea canephora HOM05D006079 ORTHO05D008156 7.8e-29 132.5 134 53.0
TAR636G2503 Trochodendron aralioides HOM05D006079 ORTHO05D008156 1.0e-28 132.1 82 78.0
MD04G1144600 Malus domestica HOM05D006079 ORTHO05D032748 1.8e-25 121.3 91 73.6
TPR.G34865 Trifolium pratense HOM05D006079 ORTHO05D008156 1.0e-20 105.5 126 49.2
BraA05t21464Z Brassica rapa HOM05D006079 ORTHO05D032748 3.2e-14 84.0 67 55.2
MBI05_g36625_MAGBIO Magnolia biondii HOM05D006079 ORTHO05D008156 6.6e-12 76.3 90 48.9
BcaC04g24204 Brassica carinata HOM05D006079 ORTHO05D032748 2.8e-10 70.9 67 49.3


User provided reference genes

Program Settings