Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen09g006640 Solanum pennellii HOM05D003987 ORTHO05D004532 3.4e-257 891.3 509 100.0
PGSC0003DMG400020336 Solanum tuberosum HOM05D003987 ORTHO05D004532 6.8e-242 840.5 509 94.5
Solyc09g011820.4 Solanum lycopersicum HOM05D003987 ORTHO05D004532 5.5e-215 751.1 441 98.2
Peaxi162Scf01302g00045 Petunia axillaris HOM05D003987 ORTHO05D004532 2.6e-185 652.5 503 75.3
Nitab4.5_0000008g0400 Nicotiana tabacum HOM05D003987 ORTHO05D004532 1.1e-162 577.4 536 66.8
PGSC0003DMG400019132 Solanum tuberosum HOM05D003987 ORTHO05D004532 2.3e-144 516.5 506 62.1
Nitab4.5_0000119g0280 Nicotiana tabacum HOM05D003987 ORTHO05D004532 5.6e-143 511.9 510 60.6
Nitab4.5_0017865g0010 Nicotiana tabacum HOM05D003987 ORTHO05D004532 7.5e-140 501.5 510 58.8
Peaxi162Scf00014g00921 Petunia axillaris HOM05D003987 ORTHO05D004532 2.3e-133 479.9 504 59.3
Nitab4.5_0002152g0110 Nicotiana tabacum HOM05D003987 ORTHO05D004532 3.3e-127 459.5 519 57.4
Dinv37095 Davidia involucrata HOM05D003987 ORTHO05D004532 9.2e-122 441.4 517 57.6
Sopen10g036150 Solanum pennellii HOM05D003987 ORTHO05D004532 1.0e-120 438.0 508 55.3
Lj2A83T77 Lonicera japonica HOM05D003987 ORTHO05D004532 4.2e-114 416.0 515 50.3
CSS0027188 Camellia sinensis var. sinensis HOM05D003987 ORTHO05D004532 1.5e-111 407.5 510 52.5
Actinidia05340 Actinidia chinensis HOM05D003987 ORTHO05D004532 1.3e-104 384.4 508 48.4
SalBow3G0011 Salvia bowleyana HOM05D003987 ORTHO05D004532 1.2e-100 371.3 506 49.2
Oeu018344.1 Olea europaea HOM05D003987 ORTHO05D004532 9.9e-100 368.2 516 51.0
Dinv35526 Davidia involucrata HOM05D003987 ORTHO05D004532 1.7e-99 367.5 504 52.2
Migut.J00243 Erythranthe guttata HOM05D003987 ORTHO05D004532 3.8e-99 366.3 507 49.5
GSVIVG01034033001 Vitis vinifera HOM05D003987 ORTHO05D004532 6.0e-97 359.0 506 51.2
Duzib093G0208 Durio zibethinus HOM05D003987 ORTHO05D004532 5.1e-96 355.9 513 49.9
CSS0029662 Camellia sinensis var. sinensis HOM05D003987 ORTHO05D004532 6.7e-96 355.5 507 47.9
Thecc.05G024900 Theobroma cacao HOM05D003987 ORTHO05D004532 7.4e-95 352.1 516 48.8
Cc06_g01840 Coffea canephora HOM05D003987 ORTHO05D004532 3.7e-94 349.7 512 48.2
CSS0016809 Camellia sinensis var. sinensis HOM05D003987 ORTHO05D004532 2.6e-92 343.6 430 53.3
Gorai.012G110200 Gossypium raimondii HOM05D003987 ORTHO05D004532 1.7e-91 340.9 519 48.0
Atru.chr8.2120 Acer truncatum HOM05D003987 ORTHO05D004532 2.2e-91 340.5 512 48.8
Gohir.D04G127200 Gossypium hirsutum HOM05D003987 ORTHO05D004532 2.2e-91 340.5 519 47.6
Oeu009906.1 Olea europaea HOM05D003987 ORTHO05D004532 3.8e-91 339.7 528 48.9
Cfa017278 Carpinus fangiana HOM05D003987 ORTHO05D004532 4.9e-91 339.3 511 47.4
Haze_20924 Corylus avellana HOM05D003987 ORTHO05D004532 8.4e-91 338.6 515 46.6
Potri.016G109100 Populus trichocarpa HOM05D003987 ORTHO05D004532 8.4e-91 338.6 515 48.3
Hma1.2p1_0244F.1_g101070 Hydrangea macrophylla HOM05D003987 ORTHO05D004532 7.1e-90 335.5 510 48.2
Solyc10g086740.3 Solanum lycopersicum HOM05D003987 ORTHO05D004532 4.6e-89 332.8 352 58.8
Gohir.A04G086900 Gossypium hirsutum HOM05D003987 ORTHO05D004532 1.3e-88 331.3 518 47.1
QL07p027561 Quercus lobata HOM05D003987 ORTHO05D004532 1.3e-88 331.3 483 47.8
Potri.006G094600 Populus trichocarpa HOM05D003987 ORTHO05D004532 8.7e-88 328.6 521 47.2
Gorai.002G259700 Gossypium raimondii HOM05D003987 ORTHO05D004532 1.9e-87 327.4 515 45.8
Duzib128G2001 Durio zibethinus HOM05D003987 ORTHO05D004532 3.3e-87 326.6 515 46.0
Ciclev10011513m.g Citrus clementina HOM05D003987 ORTHO05D004532 5.7e-87 325.9 510 48.0
Gohir.A01G224300 Gossypium hirsutum HOM05D003987 ORTHO05D004532 1.3e-86 324.7 521 46.3
CsaV3_3G034330 Cucumis sativus L. HOM05D003987 ORTHO05D004532 8.2e-86 322.0 512 43.9
Nn2g13566 Nelumbo nucifera HOM05D003987 ORTHO05D004532 3.4e-84 316.6 507 44.6
vmacro08611 Vaccinium macrocarpon HOM05D003987 ORTHO05D004532 3.4e-84 316.6 508 47.6
CAN.G351.10 Capsicum annuum HOM05D003987 ORTHO05D004532 7.7e-84 315.5 278 65.8
MELO3C009204.2 Cucumis melo HOM05D003987 ORTHO05D004532 1.0e-83 315.1 511 43.8
Prupe.6G268000 Prunus persica HOM05D003987 ORTHO05D004532 2.2e-83 313.9 508 46.7
TWI77G0200 Tripterygium wilfordii HOM05D003987 ORTHO05D004532 1.1e-82 311.6 511 45.6
ClCG10G021770 Citrullus lanatus HOM05D003987 ORTHO05D004532 4.2e-82 309.7 517 43.5
Hund08928 Selenicereus undatus HOM05D003987 ORTHO05D004532 2.1e-81 307.4 513 47.0
DCAR_028789 Daucus carota HOM05D003987 ORTHO05D004532 7.9e-81 305.4 513 44.6
COL.COLO4_14650 Corchorus olitorius HOM05D003987 ORTHO05D004532 6.7e-80 302.4 508 47.2
Sabra06G0072400 Salix brachista HOM05D003987 ORTHO05D004532 2.0e-79 300.8 521 44.3
HanXRQChr01g0001271 Helianthus annuus HOM05D003987 ORTHO05D004532 3.7e-78 296.6 515 47.4
Lj3g0003026 Lotus japonicus HOM05D003987 ORTHO05D004532 3.7e-78 296.6 508 42.9
Lsat_1_v5_gn_9_33201 Lactuca sativa HOM05D003987 ORTHO05D004532 4.8e-78 296.2 512 42.0
FAN02G3471 Fragaria x ananassa HOM05D003987 ORTHO05D004532 6.3e-78 295.8 529 43.9
TAR633G1447 Trochodendron aralioides HOM05D003987 ORTHO05D004532 2.4e-77 293.9 509 44.8
RcHm_v2.0_Chr3g0464181 Rosa chinensis HOM05D003987 ORTHO05D004532 6.9e-77 292.4 522 43.5
Cpa.g.sc56.87 Carica papaya HOM05D003987 ORTHO05D004532 2.0e-76 290.8 511 41.5
Migut.L01985 Erythranthe guttata HOM05D003987 ORTHO05D004532 2.0e-76 290.8 448 45.8
Glyma.07G142800 Glycine max HOM05D003987 ORTHO05D004532 2.6e-76 290.4 501 40.9
FvH4_6g12360 Fragaria vesca HOM05D003987 ORTHO05D004532 5.9e-76 289.3 529 44.0
Glyma.18G193700 Glycine max HOM05D003987 ORTHO05D004532 2.2e-75 287.3 507 41.2
AUR62025345 Chenopodium quinoa HOM05D003987 ORTHO05D004532 3.8e-75 286.6 512 41.6
SGA_v2.0_scaffold75G24988 Striga asiatica HOM05D003987 ORTHO05D004532 1.4e-74 284.6 514 43.8
Sc22g0004580 Simmondsia chinensis HOM05D003987 ORTHO05D004532 9.4e-74 282.0 457 48.8
Manes.09G100200 Manihot esculenta HOM05D003987 ORTHO05D004532 1.2e-73 281.6 468 45.3
DCAR_012161 Daucus carota HOM05D003987 ORTHO05D004532 4.7e-73 279.6 507 40.8
AUR62028348 Chenopodium quinoa HOM05D003987 ORTHO05D004532 1.0e-72 278.5 513 40.5
Lj1g0003107 Lotus japonicus HOM05D003987 ORTHO05D004532 1.0e-72 278.5 507 42.4
MD04G1143500 Malus domestica HOM05D003987 ORTHO05D004532 1.0e-72 278.5 505 45.5
CANSAT78G1629 Cannabis sativa HOM05D003987 ORTHO05D004532 3.0e-72 276.9 517 40.4
arahy.Tifrunner.gnm1.ann1.B3S732 Arachis hypogaea HOM05D003987 ORTHO05D004532 1.1e-71 275.0 516 41.1
Psat7g242560 Pisum sativum HOM05D003987 ORTHO05D004532 1.1e-71 275.0 518 43.2
MD12G1157700 Malus domestica HOM05D003987 ORTHO05D004532 2.0e-71 274.2 512 44.1
Medtr4g019040 Medicago truncatula HOM05D003987 ORTHO05D004532 4.4e-71 273.1 515 41.0
Phvul.008G111900 Phaseolus vulgaris HOM05D003987 ORTHO05D004532 5.7e-71 272.7 501 41.7
EL10Ac8g18936 Beta vulgaris HOM05D003987 ORTHO05D004532 7.4e-71 272.3 516 41.1
arahy.Tifrunner.gnm1.ann1.S0ZXK0 Arachis hypogaea HOM05D003987 ORTHO05D004532 1.4e-69 268.1 516 40.7
Oeu044376.1 Olea europaea HOM05D003987 ORTHO05D004532 7.0e-69 265.8 427 45.9
VMungo1383G2510 Vigna mungo HOM05D003987 ORTHO05D004532 3.5e-68 263.5 504 42.3
FAN09G0914 Fragaria x ananassa HOM05D003987 ORTHO05D004532 1.3e-67 261.5 530 41.9
MSTRG.19041 Avicennia marina HOM05D003987 ORTHO05D004532 3.8e-67 260.0 357 50.4
Sp4g20270 Schrenkiella parvula HOM05D003987 ORTHO05D004532 3.8e-67 260.0 518 40.9
Thhalv10016588m.g Eutrema salsugineum HOM05D003987 ORTHO05D004532 1.4e-66 258.1 513 42.1
PGR031G1271 Punica granatum HOM05D003987 ORTHO05D004532 7.2e-66 255.8 514 40.1
AL4G34930 Arabidopsis lyrata HOM05D003987 ORTHO05D004532 1.2e-65 255.0 521 39.9
Carub.0004s1992 Capsella rubella HOM05D003987 ORTHO05D004532 1.2e-65 255.0 520 38.7
Duzib093G1974 Durio zibethinus HOM05D003987 ORTHO05D004532 1.0e-64 251.9 359 47.6
Lalb_Chr01g0022851 Lupinus albus HOM05D003987 ORTHO05D004532 2.3e-64 250.8 509 42.4
unitig_749.g14175 Utricularia gibba HOM05D003987 ORTHO05D004532 2.3e-64 250.8 523 37.9
AT2G37960 Arabidopsis thaliana HOM05D003987 ORTHO05D004532 1.5e-63 248.1 515 39.6
Sed0025444 Sechium edule HOM05D003987 ORTHO05D004532 1.7e-62 244.6 449 43.0
AL5G35070 Arabidopsis lyrata HOM05D003987 ORTHO05D004532 3.1e-61 240.4 513 40.7
Ca_20115_v3 Cicer arietinum L. HOM05D003987 ORTHO05D004532 2.6e-60 237.3 477 42.8
MBI14_g28607_MAGBIO Magnolia biondii HOM05D003987 ORTHO05D004532 5.9e-60 236.1 505 37.4
Lalb_Chr19g0124881 Lupinus albus HOM05D003987 ORTHO05D004532 7.7e-60 235.7 444 42.6
Aqoxy1G00765 Aquilegia oxysepala HOM05D003987 ORTHO05D004532 2.2e-59 234.2 518 38.2
arahy.Tifrunner.gnm1.ann1.84Z36X Arachis hypogaea HOM05D003987 ORTHO05D004532 2.2e-59 234.2 513 45.4
arahy.Tifrunner.gnm1.ann1.L5BN96 Arachis hypogaea HOM05D003987 ORTHO05D004532 2.5e-58 230.7 509 44.6
PSO339G5295 Papaver somniferum HOM05D003987 ORTHO05D004532 4.7e-57 226.5 521 39.5
A04p29100 Brassica napus HOM05D003987 ORTHO05D004532 1.2e-55 221.9 531 39.4
AT3G54060 Arabidopsis thaliana HOM05D003987 ORTHO05D004532 1.5e-55 221.5 477 41.7
BolC4t28137H Brassica oleracea HOM05D003987 ORTHO05D004532 1.5e-55 221.5 519 38.3
Sed0006107 Sechium edule HOM05D003987 ORTHO05D004532 2.6e-55 220.7 437 40.5
PSO384G1037 Papaver somniferum HOM05D003987 ORTHO05D004532 1.3e-54 218.4 521 37.8
BraA04t18380Z Brassica rapa HOM05D003987 ORTHO05D004532 2.4e-53 214.2 532 38.9
arahy.Tifrunner.gnm1.ann1.C5KK4K Arachis hypogaea HOM05D003987 ORTHO05D004532 7.0e-53 212.6 454 45.6
Gohir.D01G213600 Gossypium hirsutum HOM05D003987 ORTHO05D004532 7.0e-53 212.6 406 39.4
Aa31LG10G8760 Aethionema arabicum HOM05D003987 ORTHO05D004532 2.0e-52 211.1 463 36.5
THA.LOC104805691 Tarenaya hassleriana HOM05D003987 ORTHO05D004532 1.5e-50 204.9 437 37.3
Actinidia01122 Actinidia chinensis HOM05D003987 ORTHO05D004532 5.5e-50 203.0 374 40.4
BraA05t19770Z Brassica rapa HOM05D003987 ORTHO05D004532 3.6e-49 200.3 437 38.0
BcaC02g11934 Brassica carinata HOM05D003987 ORTHO05D004532 3.0e-48 197.2 435 37.0
A05p08030 Brassica napus HOM05D003987 ORTHO05D004532 6.8e-48 196.1 431 38.1
Thhalv10010371m.g Eutrema salsugineum HOM05D003987 ORTHO05D004532 8.8e-48 195.7 487 35.7
TAR623G1001 Trochodendron aralioides HOM05D003987 ORTHO05D004532 8.8e-48 195.7 454 40.1
C04p09710 Brassica napus HOM05D003987 ORTHO05D004532 2.0e-47 194.5 436 37.6
BolC4t22577H Brassica oleracea HOM05D003987 ORTHO05D004532 5.7e-47 193.0 443 40.0
BcaB02g09232 Brassica carinata HOM05D003987 ORTHO05D004532 3.7e-46 190.3 434 35.9
CARHR132510 Cardamine hirsuta HOM05D003987 ORTHO05D004532 1.6e-44 184.9 517 35.6
FAN05G0535 Fragaria x ananassa HOM05D003987 ORTHO05D004532 3.3e-42 177.2 369 38.8
C06p21870 Brassica napus HOM05D003987 ORTHO05D004532 3.0e-40 170.6 458 37.1
ECA248G1591 Erigeron canadensis HOM05D003987 ORTHO05D004532 3.0e-40 170.6 513 34.3
A07p21960 Brassica napus HOM05D003987 ORTHO05D004532 6.8e-40 169.5 462 33.5
CDE09G1167 Ceratophyllum demersum HOM05D003987 ORTHO05D004532 2.0e-39 167.9 502 31.9
BcaC08g44664 Brassica carinata HOM05D003987 ORTHO05D004532 3.4e-39 167.2 459 37.3
BraA07t29878Z Brassica rapa HOM05D003987 ORTHO05D004532 3.4e-39 167.2 461 33.8
TPR.G8182 Trifolium pratense HOM05D003987 ORTHO05D004532 7.5e-39 166.0 375 37.1
Sp5g18210 Schrenkiella parvula HOM05D003987 ORTHO05D004532 1.7e-38 164.9 480 34.6
CDE02G0690 Ceratophyllum demersum HOM05D003987 ORTHO05D004532 2.7e-36 157.5 505 31.3
BcaB02g07750 Brassica carinata HOM05D003987 ORTHO05D004532 2.1e-33 147.9 431 36.2
Carub.0005s2065 Capsella rubella HOM05D003987 ORTHO05D004532 2.1e-33 147.9 450 35.8
Dinv04008 Davidia involucrata HOM05D003987 ORTHO05D004532 1.3e-30 138.7 146 58.9
Glyma.01G108900 Glycine max HOM05D003987 ORTHO05D004532 2.2e-30 137.9 412 32.3
Glyma.01G108800 Glycine max HOM05D003987 ORTHO05D004532 4.9e-30 136.7 412 32.0
Glyma.U031101 Glycine max HOM05D003987 ORTHO05D004532 4.9e-30 136.7 412 32.0
Sp5g08320 Schrenkiella parvula HOM05D003987 ORTHO05D004532 9.2e-29 132.5 473 29.0
MSTRG.19040 Avicennia marina HOM05D003987 ORTHO05D004532 2.0e-28 131.3 84 76.2
unitig_26.g9099 Utricularia gibba HOM05D003987 ORTHO05D004532 5.0e-27 126.7 292 36.0
Solyc10g086750.1 Solanum lycopersicum HOM05D003987 ORTHO05D004532 4.3e-26 123.6 122 58.2
TPR.G8224 Trifolium pratense HOM05D003987 ORTHO05D004532 4.3e-26 123.6 140 64.3
Eucgr.A00531 Eucalyptus grandis HOM05D003987 ORTHO05D004532 8.9e-24 115.9 221 42.1
Sabra16G0105800 Salix brachista HOM05D003987 ORTHO05D004532 2.0e-23 114.8 139 48.9
FAN14G4402 Fragaria x ananassa HOM05D003987 ORTHO05D004532 2.6e-23 114.4 173 43.4
Rhsim07G0146000 Rhododendron simsii HOM05D003987 ORTHO05D004532 2.6e-23 114.4 303 37.3
Glyma.01G153900 Glycine max HOM05D003987 ORTHO05D004532 5.8e-23 113.2 359 30.9
HPP92_003415 Vanilla planifolia HOM05D003987 ORTHO05D004532 5.4e-21 106.7 470 29.1
Psat6g189000 Pisum sativum HOM05D003987 ORTHO05D004532 1.2e-20 105.5 222 35.6
Glyma.03G074167 Glycine max HOM05D003987 ORTHO05D004532 2.1e-20 104.8 398 27.9
ATR0618G159 Amborella trichopoda HOM05D003987 ORTHO05D004532 2.3e-19 101.3 507 28.2
TWI74G0508 Tripterygium wilfordii HOM05D003987 ORTHO05D004532 3.0e-19 100.9 446 30.3
SEGI_16848 Sequoiadendron giganteum HOM05D003987 ORTHO05D004532 1.9e-18 98.2 523 27.2
SHI32881 Sapria himalayana HOM05D003987 ORTHO05D004532 6.4e-14 83.2 54 70.4
Zm00001eb298020 Zea mays HOM05D003987 ORTHO05D004532 2.4e-13 81.3 531 26.0
TPR.G34870 Trifolium pratense HOM05D003987 ORTHO05D004532 1.2e-12 79.0 63 63.5
Medtr7g066170 Medicago truncatula HOM05D003987 ORTHO05D004532 6.6e-11 73.2 302 29.1
BolC6t37375H Brassica oleracea HOM05D003987 ORTHO05D004532 1.1e-10 72.4 72 50.0
CDE04G2728 Ceratophyllum demersum HOM05D003987 ORTHO05D004532 1.9e-10 71.6 84 42.9
Phvul.006G111000 Phaseolus vulgaris HOM05D003987 ORTHO05D004532 1.2e-09 68.9 74 44.6
BcaC02g11935 Brassica carinata HOM05D003987 ORTHO05D004532 6.2e-09 66.6 44 70.5
Os03g0100010 Oryza sativa ssp. japonica HOM05D003987 ORTHO05D004532 6.2e-09 66.6 68 47.1
unitig_26.g9098 Utricularia gibba HOM05D003987 ORTHO05D004532 6.2e-09 66.6 128 37.5
VMungo1309G3141 Vigna mungo HOM05D014262 ORTHO05D018084 1.4e-08 65.5 74 45.9
TPR.G13647 Trifolium pratense HOM05D003987 ORTHO05D004532 5.2e-08 63.5 255 27.1
VMungo0331G1594 Vigna mungo HOM05D003987 ORTHO05D004532 2.0e-07 61.6 69 47.8
Phvul.008G082101 Phaseolus vulgaris HOM05D014262 ORTHO05D018084 8.4e-06 56.2 76 39.5


User provided reference genes

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