Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen09g006180 Solanum pennellii HOM05D006892 ORTHO05D008592 3.1e-43 177.9 84 100.0
PGSC0003DMG400024270 Solanum tuberosum HOM05D006892 ORTHO05D008592 3.0e-33 144.8 84 86.9
CAN.G697.1 Capsicum annuum HOM05D006892 ORTHO05D008592 5.6e-24 114.0 103 65.0
Sopen09g006190 Solanum pennellii HOM05D006892 ORTHO05D008592 3.0e-17 91.7 81 63.0
TPR.G34921 Trifolium pratense HOM05D006892 ORTHO05D008592 2.1e-10 68.9 84 45.2
Dinv34454 Davidia involucrata HOM05D006892 ORTHO05D008592 2.7e-10 68.6 77 45.5
Glyma.03G073200 Glycine max HOM05D006892 ORTHO05D008592 2.7e-10 68.6 82 47.6
Ciclev10033223m.g Citrus clementina HOM05D006892 ORTHO05D008592 3.5e-10 68.2 79 44.3
HanXRQChr05g0156901 Helianthus annuus HOM05D006892 ORTHO05D008592 3.5e-10 68.2 58 51.7
Lalb_Chr19g0125031 Lupinus albus HOM05D006892 ORTHO05D008592 3.5e-10 68.2 87 43.7
Cc06_g02080 Coffea canephora HOM05D006892 ORTHO05D008592 6.0e-10 67.4 79 41.8
TAR636G2473 Trochodendron aralioides HOM05D006892 ORTHO05D008592 1.0e-09 66.6 74 48.6
Thecc.05G029200 Theobroma cacao HOM05D006892 ORTHO05D008592 1.7e-09 65.9 79 49.4
COL.COLO4_14695 Corchorus olitorius HOM05D006892 ORTHO05D008592 2.3e-09 65.5 80 46.2
Dinv37115 Davidia involucrata HOM05D006892 ORTHO05D008592 2.3e-09 65.5 73 45.2
Hma1.2p1_0039F.1_g024865 Hydrangea macrophylla HOM05D006892 ORTHO05D008592 2.3e-09 65.5 77 46.8
Hma1.2p1_0039F.1_g024870 Hydrangea macrophylla HOM05D006892 ORTHO05D008592 2.3e-09 65.5 77 46.8
Medtr7g065130 Medicago truncatula HOM05D006892 ORTHO05D008592 3.0e-09 65.1 80 47.5
TAR633G0729 Trochodendron aralioides HOM05D006892 ORTHO05D008592 3.0e-09 65.1 74 45.9
Atru.chr8.2090 Acer truncatum HOM05D006892 ORTHO05D008592 5.1e-09 64.3 83 43.4
MD12G1154700 Malus domestica HOM05D006892 ORTHO05D008592 5.1e-09 64.3 79 46.8
CiPaw.10G149300 Carya illinoinensis HOM05D006892 ORTHO05D008592 6.6e-09 63.9 58 55.2
MD04G1138900 Malus domestica HOM05D006892 ORTHO05D008592 6.6e-09 63.9 79 45.6
Phvul.008G114100 Phaseolus vulgaris HOM05D006892 ORTHO05D008592 6.6e-09 63.9 80 42.5
Psat7g241320 Pisum sativum HOM05D006892 ORTHO05D008592 6.6e-09 63.9 82 46.3
Gohir.D04G125400 Gossypium hirsutum HOM05D006892 ORTHO05D008592 8.7e-09 63.5 76 51.3
Gorai.012G108500 Gossypium raimondii HOM05D006892 ORTHO05D008592 8.7e-09 63.5 76 51.3
Lsat_1_v5_gn_9_32981 Lactuca sativa HOM05D006892 ORTHO05D008592 8.7e-09 63.5 58 46.6
Lj3g0005144 Lotus japonicus HOM05D006892 ORTHO05D008592 8.7e-09 63.5 85 45.9
Potri.010G196500 Populus trichocarpa HOM05D006892 ORTHO05D008592 8.7e-09 63.5 77 44.2
Glyma.01G105400 Glycine max HOM05D006892 ORTHO05D008592 1.1e-08 63.2 82 45.1
Glyma.18G189800 Glycine max HOM05D006892 ORTHO05D008592 1.1e-08 63.2 83 43.4
Gohir.A09G152400 Gossypium hirsutum HOM05D006892 ORTHO05D008592 1.1e-08 63.2 79 46.8
Psat3g133520 Pisum sativum HOM05D006892 ORTHO05D008592 1.1e-08 63.2 80 46.2
Gohir.D09G148100 Gossypium hirsutum HOM05D006892 ORTHO05D008592 1.5e-08 62.8 79 46.8
Gorai.006G169100 Gossypium raimondii HOM05D006892 ORTHO05D008592 1.5e-08 62.8 79 46.8
TAR623G0452 Trochodendron aralioides HOM05D006892 ORTHO05D008592 1.5e-08 62.8 74 43.2
arahy.Tifrunner.gnm1.ann1.KB6CC9 Arachis hypogaea HOM05D006892 ORTHO05D008592 1.9e-08 62.4 60 50.0
arahy.Tifrunner.gnm1.ann1.KX701I Arachis hypogaea HOM05D006892 ORTHO05D008592 1.9e-08 62.4 60 50.0
CSS0009632 Camellia sinensis var. sinensis HOM05D006892 ORTHO05D008592 1.9e-08 62.4 82 43.9
Medtr4g019640 Medicago truncatula HOM05D006892 ORTHO05D008592 1.9e-08 62.4 80 42.5
CSS0005500 Camellia sinensis var. sinensis HOM05D006892 ORTHO05D008592 2.5e-08 62.0 82 43.9
CSS0020330 Camellia sinensis var. sinensis HOM05D006892 ORTHO05D008592 2.5e-08 62.0 82 43.9
HanXRQChr08g0221291 Helianthus annuus HOM05D006892 ORTHO05D008592 2.5e-08 62.0 72 40.3
GSVIVG01016437001 Vitis vinifera HOM05D006892 ORTHO05D008592 2.5e-08 62.0 58 50.0
Glyma.07G139200 Glycine max HOM05D006892 ORTHO05D008592 3.3e-08 61.6 84 41.7
Rhsim05G0199800 Rhododendron simsii HOM05D006892 ORTHO05D008592 3.3e-08 61.6 80 45.0
Glyma.04G105400 Glycine max HOM05D006892 ORTHO05D008592 5.6e-08 60.8 82 41.5
TPR.G32561 Trifolium pratense HOM05D006892 ORTHO05D008592 5.6e-08 60.8 60 46.7
arahy.Tifrunner.gnm1.ann1.AC77RP Arachis hypogaea HOM05D006892 ORTHO05D008592 7.3e-08 60.5 85 41.2
CSS0011916 Camellia sinensis var. sinensis HOM05D006892 ORTHO05D008592 7.3e-08 60.5 79 44.3
Lj1g0020029 Lotus japonicus HOM05D006892 ORTHO05D008592 7.3e-08 60.5 61 49.2
Lalb_Chr03g0042701 Lupinus albus HOM05D006892 ORTHO05D008592 7.3e-08 60.5 83 36.1
MBI05_g02667_MAGBIO Magnolia biondii HOM05D006892 ORTHO05D008592 7.3e-08 60.5 75 40.0
arahy.Tifrunner.gnm1.ann1.71B432 Arachis hypogaea HOM05D006892 ORTHO05D008592 9.6e-08 60.1 85 41.2
Medtr3g069540 Medicago truncatula HOM05D006892 ORTHO05D008592 9.6e-08 60.1 81 45.7
Gohir.A04G085600 Gossypium hirsutum HOM05D006892 ORTHO05D008592 1.2e-07 59.7 76 46.1
CiPaw.09G201300 Carya illinoinensis HOM05D006892 ORTHO05D008592 2.1e-07 58.9 83 44.6
Manes.10G021300 Manihot esculenta HOM05D006892 ORTHO05D008592 2.1e-07 58.9 59 49.2
Potri.006G092300 Populus trichocarpa HOM05D006892 ORTHO05D008592 2.1e-07 58.9 42 59.5
Sabra08G0045200 Salix brachista HOM05D006892 ORTHO05D008592 2.1e-07 58.9 77 44.2
Haze_20883 Corylus avellana HOM05D006892 ORTHO05D008592 2.8e-07 58.5 73 43.8
Haze_20892 Corylus avellana HOM05D006892 ORTHO05D008592 2.8e-07 58.5 73 43.8
Phvul.010G009200 Phaseolus vulgaris HOM05D006892 ORTHO05D008592 2.8e-07 58.5 78 41.0
Potri.016G103900 Populus trichocarpa HOM05D006892 ORTHO05D008592 2.8e-07 58.5 57 45.6
CiPaw.01G293100 Carya illinoinensis HOM05D006892 ORTHO05D008592 3.6e-07 58.2 80 46.2
Prupe.6G264500 Prunus persica HOM05D006892 ORTHO05D008592 3.6e-07 58.2 81 39.5
FAN14G5964 Fragaria x ananassa HOM05D006892 ORTHO05D008592 4.7e-07 57.8 85 41.2
RcHm_v2.0_Chr3g0464651 Rosa chinensis HOM05D006892 ORTHO05D008592 6.2e-07 57.4 85 40.0
FAN05G3252 Fragaria x ananassa HOM05D006892 ORTHO05D008592 1.1e-06 56.6 77 42.9
FAN09G3730 Fragaria x ananassa HOM05D006892 ORTHO05D008592 1.1e-06 56.6 77 42.9
Ciclev10013234m.g Citrus clementina HOM05D006892 ORTHO05D008592 1.4e-06 56.2 75 38.7
FAN02G3144 Fragaria x ananassa HOM05D006892 ORTHO05D008592 1.8e-06 55.8 85 40.0
CSS0014654 Camellia sinensis var. sinensis HOM05D006892 ORTHO05D008592 2.4e-06 55.5 84 42.9
Cpa.g.sc56.60 Carica papaya HOM05D006892 ORTHO05D008592 2.4e-06 55.5 77 44.2
FvH4_6g12730 Fragaria vesca HOM05D006892 ORTHO05D008592 2.4e-06 55.5 85 40.0
Haze_17148 Corylus avellana HOM05D000015 ORTHO05D000270 3.1e-06 55.1 80 40.0
Phvul.001G238200 Phaseolus vulgaris HOM05D006892 ORTHO05D008592 3.1e-06 55.1 83 37.3
Manes.09G098400 Manihot esculenta HOM05D006892 ORTHO05D008592 4.0e-06 54.7 84 42.9
Cfa001402 Carpinus fangiana HOM05D006892 ORTHO05D008592 5.2e-06 54.3 78 43.6
Sabra06G0070000 Salix brachista HOM05D006892 ORTHO05D008592 5.2e-06 54.3 42 54.8
Actinidia02903 Actinidia chinensis HOM05D006892 ORTHO05D008592 6.9e-06 53.9 43 48.8
Manes.07G122400 Manihot esculenta HOM05D006892 ORTHO05D008592 9.0e-06 53.5 50 44.0
Sabra10G0151100 Salix brachista HOM05D006892 ORTHO05D008592 9.0e-06 53.5 74 39.2


User provided reference genes

Program Settings