Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen09g006170 Solanum pennellii HOM05D004212 ORTHO05D005128 2.5e-175 618.6 305 100.0
Solyc09g011450.4 Solanum lycopersicum HOM05D004212 ORTHO05D005128 4.8e-174 614.4 305 99.3
PGSC0003DMG400024265 Solanum tuberosum HOM05D004212 ORTHO05D005128 2.9e-163 578.6 322 91.3
Nitab4.5_0008116g0030 Nicotiana tabacum HOM05D004212 ORTHO05D005128 5.7e-151 537.7 305 88.2
Peaxi162Scf00975g00132 Petunia axillaris HOM05D004212 ORTHO05D005128 4.1e-141 505.0 305 82.6
Migut.J00264 Erythranthe guttata HOM05D004212 ORTHO05D005128 5.8e-103 378.3 307 66.1
GSVIVG01034068001 Vitis vinifera HOM05D004212 ORTHO05D005128 1.7e-102 376.7 303 64.7
MSTRG.10244 Avicennia marina HOM05D004212 ORTHO05D005128 2.9e-102 375.9 310 65.2
Thecc.05G029300 Theobroma cacao HOM05D004212 ORTHO05D005128 8.3e-102 374.4 307 63.5
Oeu001834.1 Olea europaea HOM05D004212 ORTHO05D005128 1.9e-101 373.2 316 64.2
CiPaw.09G201200 Carya illinoinensis HOM05D004212 ORTHO05D005128 5.4e-101 371.7 305 63.6
Cc06_g02090 Coffea canephora HOM05D004212 ORTHO05D005128 9.5e-98 360.9 315 62.9
TAR633G1640 Trochodendron aralioides HOM05D004212 ORTHO05D005128 6.2e-97 358.2 309 61.2
SalBow7G2619 Salvia bowleyana HOM05D004212 ORTHO05D005128 4.0e-96 355.5 307 63.5
Haze_20882 Corylus avellana HOM05D004212 ORTHO05D005128 1.7e-94 350.1 335 58.2
Cfa010180 Carpinus fangiana HOM05D004212 ORTHO05D005128 2.9e-94 349.4 305 62.3
Lalb_Chr03g0042691 Lupinus albus HOM05D004212 ORTHO05D005128 3.7e-94 349.0 309 59.2
Haze_20891 Corylus avellana HOM05D004212 ORTHO05D005128 4.9e-94 348.6 335 57.9
Gohir.D01G209900 Gossypium hirsutum HOM05D004212 ORTHO05D005128 4.9e-94 348.6 307 61.6
Gorai.002G255500 Gossypium raimondii HOM05D004212 ORTHO05D005128 4.9e-94 348.6 307 61.6
Gohir.A01G221000 Gossypium hirsutum HOM05D004212 ORTHO05D005128 4.1e-93 345.5 307 61.6
CsaV3_4G025590 Cucumis sativus L. HOM05D004212 ORTHO05D005128 2.1e-92 343.2 322 59.3
Ca_07566_v3 Cicer arietinum L. HOM05D004212 ORTHO05D005128 4.6e-92 342.0 309 60.5
Psat3g133560 Pisum sativum HOM05D004212 ORTHO05D005128 4.6e-92 342.0 307 61.6
Lsat_1_v5_gn_8_84101 Lactuca sativa HOM05D004212 ORTHO05D005128 6.0e-92 341.7 308 60.1
unitig_62.g23469 Utricularia gibba HOM05D004212 ORTHO05D005128 6.0e-92 341.7 308 58.4
MELO3C003185.2 Cucumis melo HOM05D004212 ORTHO05D005128 1.3e-91 340.5 322 59.6
ClCG04G007620 Citrullus lanatus HOM05D004212 ORTHO05D005128 3.9e-91 339.0 322 59.6
CAN.G697.3 Capsicum annuum HOM05D004212 ORTHO05D005128 1.1e-90 337.4 206 85.0
CANSAT35G0035 Cannabis sativa HOM05D004212 ORTHO05D005128 3.3e-90 335.9 311 62.1
Lalb_Chr19g0125041 Lupinus albus HOM05D004212 ORTHO05D005128 2.1e-89 333.2 311 56.6
TWI53G1663 Tripterygium wilfordii HOM05D004212 ORTHO05D005128 6.2e-89 331.6 321 59.8
Eucgr.K03043 Eucalyptus grandis HOM05D004212 ORTHO05D005128 1.4e-88 330.5 306 59.5
THA.LOC104806541 Tarenaya hassleriana HOM05D004212 ORTHO05D005128 1.8e-88 330.1 311 60.8
DCAR_028811 Daucus carota HOM05D004212 ORTHO05D005128 4.0e-88 328.9 309 58.9
Manes.09G098300 Manihot esculenta HOM05D004212 ORTHO05D005128 4.0e-88 328.9 313 58.8
Ciclev10021036m.g Citrus clementina HOM05D004212 ORTHO05D005128 8.9e-88 327.8 306 59.2
COL.COLO4_14697 Corchorus olitorius HOM05D004212 ORTHO05D005128 2.0e-87 326.6 311 61.1
Atru.chr8.2089 Acer truncatum HOM05D004212 ORTHO05D005128 3.4e-87 325.9 309 60.2
TPR.G34923 Trifolium pratense HOM05D004212 ORTHO05D005128 4.4e-87 325.5 316 58.9
ECA236G3305 Erigeron canadensis HOM05D004212 ORTHO05D005128 1.3e-86 323.9 311 57.9
Sed0021611 Sechium edule HOM05D004212 ORTHO05D005128 1.3e-86 323.9 315 58.1
Prupe.6G264400 Prunus persica HOM05D004212 ORTHO05D005128 1.7e-86 323.6 323 59.1
TWI74G0733 Tripterygium wilfordii HOM05D004212 ORTHO05D005128 3.8e-86 322.4 324 57.4
Glyma.15G165200 Glycine max HOM05D004212 ORTHO05D005128 8.4e-86 321.2 307 57.0
Glyma.09G059100 Glycine max HOM05D004212 ORTHO05D005128 1.1e-85 320.9 310 57.1
Hund00715 Selenicereus undatus HOM05D004212 ORTHO05D005128 2.4e-85 319.7 328 56.1
HanXRQChr04g0124481 Helianthus annuus HOM05D004212 ORTHO05D005128 4.1e-85 318.9 310 57.7
arahy.Tifrunner.gnm1.ann1.PUF7HK Arachis hypogaea HOM05D004212 ORTHO05D005128 6.0e-84 315.1 312 56.1
CSS0007767 Camellia sinensis var. sinensis HOM05D004212 ORTHO05D005128 6.0e-84 315.1 307 57.3
Carub.0005s2056 Capsella rubella HOM05D004212 ORTHO05D005128 2.3e-83 313.2 313 59.4
Ciclev10012365m.g Citrus clementina HOM05D004212 ORTHO05D005128 5.1e-83 312.0 310 59.0
VMungo0540G1009 Vigna mungo HOM05D004212 ORTHO05D005128 5.1e-83 312.0 308 56.5
FAN12G2442 Fragaria x ananassa HOM05D004212 ORTHO05D005128 6.6e-83 311.6 310 58.7
FAN12G3486 Fragaria x ananassa HOM05D004212 ORTHO05D005128 6.6e-83 311.6 310 58.7
arahy.Tifrunner.gnm1.ann1.MS11WY Arachis hypogaea HOM05D004212 ORTHO05D005128 1.1e-82 310.8 312 55.8
Lj1g0008590 Lotus japonicus HOM05D004212 ORTHO05D005128 1.1e-82 310.8 321 57.0
PGR004G1844 Punica granatum HOM05D004212 ORTHO05D005128 3.3e-82 309.3 324 55.2
Aa31LG10G8930 Aethionema arabicum HOM05D004212 ORTHO05D005128 7.3e-82 308.1 308 60.7
arahy.Tifrunner.gnm1.ann1.59HWIF Arachis hypogaea HOM05D004212 ORTHO05D005128 1.6e-81 307.0 311 55.0
RcHm_v2.0_Chr4g0406841 Rosa chinensis HOM05D004212 ORTHO05D005128 1.6e-81 307.0 307 58.6
MD04G1138800 Malus domestica HOM05D004212 ORTHO05D005128 2.1e-81 306.6 316 56.0
Phvul.006G149300 Phaseolus vulgaris HOM05D004212 ORTHO05D005128 2.1e-81 306.6 308 55.2
FAN07G0792 Fragaria x ananassa HOM05D004212 ORTHO05D005128 8.1e-81 304.7 306 57.5
Medtr7g065120 Medicago truncatula HOM05D004212 ORTHO05D005128 1.1e-80 304.3 310 55.8
AT3G53970 Arabidopsis thaliana HOM05D004212 ORTHO05D005128 1.4e-80 303.9 311 58.5
AL5G34970 Arabidopsis lyrata HOM05D004212 ORTHO05D005128 8.9e-80 301.2 311 58.5
arahy.Tifrunner.gnm1.ann1.77ZQ01 Arachis hypogaea HOM05D004212 ORTHO05D005128 1.5e-79 300.4 311 54.3
MD12G1154600 Malus domestica HOM05D004212 ORTHO05D005128 5.8e-79 298.5 318 54.7
Sc22g0004390 Simmondsia chinensis HOM05D004212 ORTHO05D005128 5.8e-79 298.5 306 54.6
Nn2g11289 Nelumbo nucifera HOM05D004212 ORTHO05D005128 7.6e-79 298.1 315 54.6
Dinv35542 Davidia involucrata HOM05D004212 ORTHO05D005128 1.7e-78 297.0 255 63.5
EL10Ac3g05638 Beta vulgaris HOM05D004212 ORTHO05D005128 3.8e-78 295.8 317 54.3
vmacro20195 Vaccinium macrocarpon HOM05D004212 ORTHO05D005128 6.4e-78 295.0 317 54.3
Sabra16G0103700 Salix brachista HOM05D004212 ORTHO05D005128 4.2e-77 292.4 313 54.3
Duzib093G0395 Durio zibethinus HOM05D004212 ORTHO05D005128 9.3e-77 291.2 306 54.2
Hma1.2p1_0671F.1_g200560 Hydrangea macrophylla HOM05D004212 ORTHO05D005128 9.3e-77 291.2 310 55.2
Potri.016G103800 Populus trichocarpa HOM05D004212 ORTHO05D005128 1.6e-76 290.4 314 53.8
CARHR163870 Cardamine hirsuta HOM05D004212 ORTHO05D005128 6.0e-76 288.5 319 55.5
Oeu021128.1 Olea europaea HOM05D004212 ORTHO05D005128 1.7e-75 287.0 396 44.2
arahy.Tifrunner.gnm1.ann1.SP0BHI Arachis hypogaea HOM05D004212 ORTHO05D005128 1.1e-74 284.3 286 55.6
AUR62021188 Chenopodium quinoa HOM05D004212 ORTHO05D005128 9.6e-74 281.2 320 51.9
QL07p028338 Quercus lobata HOM05D004212 ORTHO05D005128 6.2e-73 278.5 294 55.8
Rhsim05G0199700 Rhododendron simsii HOM05D004212 ORTHO05D005128 4.5e-71 272.3 307 51.8
AUR62015980 Chenopodium quinoa HOM05D004212 ORTHO05D005128 1.3e-70 270.8 313 50.8
Thhalv10010577m.g Eutrema salsugineum HOM05D004212 ORTHO05D005128 2.2e-70 270.0 314 53.8
HPP92_005893 Vanilla planifolia HOM05D004212 ORTHO05D005128 2.9e-70 269.6 310 51.6
CDE02G2360 Ceratophyllum demersum HOM05D004212 ORTHO05D005128 7.1e-69 265.0 304 50.7
SGA_v2.0_scaffold673G53429 Striga asiatica HOM05D004212 ORTHO05D005128 6.0e-68 261.9 233 61.4
ATR1134G026 Amborella trichopoda HOM05D004212 ORTHO05D005128 1.3e-67 260.8 301 50.8
Lj2C86T9 Lonicera japonica HOM05D004212 ORTHO05D005128 9.0e-64 248.1 285 53.3
BcaB02g07758 Brassica carinata HOM05D004212 ORTHO05D005128 3.4e-63 246.1 319 53.9
Actinidia29168 Actinidia chinensis HOM05D004212 ORTHO05D005128 2.2e-62 243.4 314 49.4
BolC6t37364H Brassica oleracea HOM05D004212 ORTHO05D005128 8.4e-62 241.5 321 53.3
BraA07t29869Z Brassica rapa HOM05D004212 ORTHO05D005128 8.4e-62 241.5 322 53.4
BcaC08g44655 Brassica carinata HOM05D004212 ORTHO05D005128 1.4e-61 240.7 321 53.3
A07p21880 Brassica napus HOM05D004212 ORTHO05D005128 1.4e-61 240.7 322 53.4
C06p21750 Brassica napus HOM05D004212 ORTHO05D005128 1.4e-61 240.7 321 53.3
Zm00001eb323600 Zea mays HOM05D004212 ORTHO05D005128 2.4e-61 240.0 315 47.0
FvH4_4g10740 Fragaria vesca HOM05D004212 ORTHO05D005128 4.2e-61 239.2 254 55.5
Sp5g08430 Schrenkiella parvula HOM05D004212 ORTHO05D005128 4.2e-61 239.2 316 52.2
Mapoly0013s0005 Marchantia polymorpha HOM05D004212 ORTHO05D005128 3.5e-60 236.1 311 47.9
PSO384G5122 Papaver somniferum HOM05D004212 ORTHO05D005128 6.0e-60 235.3 316 48.4
PSO339G0401 Papaver somniferum HOM05D004212 ORTHO05D005128 7.9e-60 235.0 316 48.7
Aqoxy4G03223 Aquilegia oxysepala HOM05D004212 ORTHO05D005128 1.1e-58 231.1 308 46.8
FAN05G0076 Fragaria x ananassa HOM05D004212 ORTHO05D005128 1.5e-58 230.7 339 46.6
FvH4_6g12740 Fragaria vesca HOM05D004212 ORTHO05D005128 1.9e-58 230.3 338 47.0
Aqoxy7G01126 Aquilegia oxysepala HOM05D004212 ORTHO05D005128 4.3e-58 229.2 311 46.9
FAN14G3630 Fragaria x ananassa HOM05D004212 ORTHO05D005128 7.4e-58 228.4 343 46.1
Os07g0548900 Oryza sativa ssp. japonica HOM05D004212 ORTHO05D005128 2.9e-54 216.5 304 46.1
RcHm_v2.0_Chr3g0464661 Rosa chinensis HOM05D004212 ORTHO05D005128 8.4e-54 214.9 338 44.1
Nn2g13527 Nelumbo nucifera HOM05D004212 ORTHO05D005128 2.3e-51 206.8 260 48.5
Pp3c12_26190 Physcomitrium patens HOM05D004212 ORTHO05D005128 3.0e-51 206.5 308 44.2
CAN.G697.2 Capsicum annuum HOM05D004212 ORTHO05D005128 1.3e-46 191.0 111 84.7
BraA09t40156Z Brassica rapa HOM05D004212 ORTHO05D005128 1.3e-41 174.5 319 44.5
FAN09G1025 Fragaria x ananassa HOM05D004212 ORTHO05D005128 1.3e-41 174.5 144 59.7
Lj4g0027540 Lotus japonicus HOM05D004212 ORTHO05D005128 1.3e-41 174.5 329 42.6
SMO115G0073 Selaginella moellendorffii HOM05D004212 ORTHO05D005128 6.3e-41 172.2 303 43.6
A09p46880 Brassica napus HOM05D004212 ORTHO05D005128 1.1e-40 171.4 306 43.8
CBR_g46706 Chara braunii HOM05D004212 ORTHO05D005128 1.8e-40 170.6 361 38.0
BcaB01g00227 Brassica carinata HOM05D004212 ORTHO05D005128 1.6e-36 157.5 250 46.0
Hma1.2p1_0097F.1_g048000 Hydrangea macrophylla HOM05D004212 ORTHO05D005128 3.6e-36 156.4 115 68.7
Carub.0003s2694 Capsella rubella HOM05D004212 ORTHO05D005128 2.0e-34 150.6 173 52.0
RcHm_v2.0_Chr4g0419261 Rosa chinensis HOM05D004212 ORTHO05D005128 3.3e-34 149.8 243 43.6
Prupe.6G304800 Prunus persica HOM05D004212 ORTHO05D005128 3.7e-33 146.4 169 50.3
AL3G43180 Arabidopsis lyrata HOM05D004212 ORTHO05D005128 2.4e-32 143.7 175 51.4
AT1G48530 Arabidopsis thaliana HOM05D004212 ORTHO05D005128 5.3e-32 142.5 166 51.8
AL3G43230 Arabidopsis lyrata HOM05D004212 ORTHO05D005128 3.4e-31 139.8 174 48.3
MD12G1200000 Malus domestica HOM05D004212 ORTHO05D005128 1.0e-30 138.3 172 51.2
BcaB02g08498 Brassica carinata HOM05D004212 ORTHO05D005128 2.2e-30 137.1 291 39.5
PSO421G0231 Papaver somniferum HOM05D004212 ORTHO05D005128 3.8e-30 136.3 171 49.7
Lj3C960G5 Lonicera japonica HOM05D004212 ORTHO05D005128 5.0e-30 136.0 256 36.7
PSO104G0021 Papaver somniferum HOM05D004212 ORTHO05D005128 4.2e-29 132.9 169 46.7
arahy.Tifrunner.gnm1.ann1.MGHR3Z Arachis hypogaea HOM05D004212 ORTHO05D005128 7.2e-29 132.1 115 56.5
SEGI_10222 Sequoiadendron giganteum HOM05D004212 ORTHO05D005128 9.4e-29 131.7 193 44.0
SEGI_17127 Sequoiadendron giganteum HOM05D004212 ORTHO05D005128 1.2e-28 131.3 107 66.4
arahy.Tifrunner.gnm1.ann1.U24FMU Arachis hypogaea HOM05D004212 ORTHO05D005128 1.8e-27 127.5 102 63.7
C08p29190 Brassica napus HOM05D004212 ORTHO05D005128 2.3e-27 127.1 289 41.2
MD17G1162600 Malus domestica HOM05D004212 ORTHO05D005128 3.0e-27 126.7 143 51.7
BcaC07g39746 Brassica carinata HOM05D004212 ORTHO05D005128 5.2e-27 125.9 289 40.8
BolC8t50520H Brassica oleracea HOM05D004212 ORTHO05D005128 6.7e-27 125.6 289 40.8
Duzib106G0220 Durio zibethinus HOM05D004212 ORTHO05D005128 2.8e-25 120.2 107 61.7
PSO104G0005 Papaver somniferum HOM05D004212 ORTHO05D005128 7.0e-24 115.5 177 45.2
PSO104G0091 Papaver somniferum HOM05D004212 ORTHO05D005128 7.0e-24 115.5 177 45.2
Cfa009861 Carpinus fangiana HOM05D004212 ORTHO05D005128 6.5e-22 109.0 256 37.1
RcHm_v2.0_Chr4g0416021 Rosa chinensis HOM05D004212 ORTHO05D005128 6.1e-20 102.4 130 46.9
SGA_v2.0_scaffold96G28918 Striga asiatica HOM05D004212 ORTHO05D005128 2.4e-16 90.5 81 64.2
AagrBONN_evm.TU.Sc2ySwM_344.2315 Anthoceros agrestis HOM05D004212 ORTHO05D005128 4.2e-13 79.7 185 36.8
BolC6t39520H Brassica oleracea HOM05D004212 ORTHO05D005128 9.4e-13 78.6 104 47.1
BcaC02g09118 Brassica carinata HOM05D004212 ORTHO05D005128 1.5e-10 71.2 71 57.7
TAR633G2132 Trochodendron aralioides HOM05D004212 ORTHO05D005128 1.5e-10 71.2 272 26.5
FAN02G2124 Fragaria x ananassa HOM05D004212 ORTHO05D005128 1.3e-09 68.2 136 43.4
Lalb_Chr18g0052541 Lupinus albus HOM05D004212 ORTHO05D005128 3.7e-09 66.6 56 57.1
BcaC01g05774 Brassica carinata HOM05D004212 ORTHO05D005128 1.4e-08 64.7 55 56.4
CARHR164030 Cardamine hirsuta HOM05D004212 ORTHO05D005128 2.3e-06 57.4 57 59.6


User provided reference genes

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