Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen09g005210 Solanum pennellii HOM05D001886 ORTHO05D005666 1.7e-233 812.4 434 100.0
Solyc09g010470.3 Solanum lycopersicum HOM05D001886 ORTHO05D005666 4.2e-232 807.7 434 99.1
PGSC0003DMG400008924 Solanum tuberosum HOM05D001886 ORTHO05D005666 3.9e-230 801.2 433 97.9
CAN.G97.10 Capsicum annuum HOM05D001886 ORTHO05D005666 8.2e-212 740.3 432 90.7
Nitab4.5_0002077g0040 Nicotiana tabacum HOM05D001886 ORTHO05D005666 2.1e-191 672.5 433 83.4
Peaxi162Scf00039g01233 Petunia axillaris HOM05D001886 ORTHO05D005666 1.7e-180 636.3 426 81.0
Migut.J00351 Erythranthe guttata HOM05D001886 ORTHO05D005666 8.0e-167 590.9 433 73.0
QL05p010709 Quercus lobata HOM05D001886 ORTHO05D005666 1.9e-163 579.7 434 70.7
Hma1.2p1_1481F.1_g286150 Hydrangea macrophylla HOM05D001886 ORTHO05D005666 3.2e-163 578.9 431 70.1
QL07p047480 Quercus lobata HOM05D001886 ORTHO05D005666 5.4e-163 578.2 434 70.5
SalBow3G2787 Salvia bowleyana HOM05D001886 ORTHO05D005666 1.2e-162 577.0 432 70.6
HanXRQChr07g0196201 Helianthus annuus HOM05D001886 ORTHO05D005666 1.7e-161 573.2 432 69.0
Cfa017420 Carpinus fangiana HOM05D001886 ORTHO05D005666 2.3e-161 572.8 429 70.2
Ciclev10011745m.g Citrus clementina HOM05D001886 ORTHO05D005666 2.5e-160 569.3 428 70.8
CiPaw.09G189500 Carya illinoinensis HOM05D001886 ORTHO05D005666 3.6e-159 565.5 429 69.0
MSTRG.5681 Avicennia marina HOM05D001886 ORTHO05D005666 8.1e-159 564.3 432 69.7
Haze_20750 Corylus avellana HOM05D001886 ORTHO05D005666 1.4e-158 563.5 444 67.8
Thecc.05G043700 Theobroma cacao HOM05D001886 ORTHO05D005666 3.1e-158 562.4 429 69.0
CSS0002297 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 4.0e-158 562.0 433 68.6
Lsat_1_v5_gn_2_111601 Lactuca sativa HOM05D001886 ORTHO05D005666 4.0e-158 562.0 432 68.5
CSS0014030 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 6.8e-158 561.2 430 68.8
ECA238G4795 Erigeron canadensis HOM05D001886 ORTHO05D005666 1.2e-157 560.5 432 67.4
Manes.09G087100 Manihot esculenta HOM05D001886 ORTHO05D005666 1.2e-157 560.5 431 69.6
TAR633G2154 Trochodendron aralioides HOM05D001886 ORTHO05D005666 1.2e-157 560.5 429 70.4
Sabra06G0063300 Salix brachista HOM05D001886 ORTHO05D005666 6.4e-156 554.7 431 68.2
Oeu036169.1 Olea europaea HOM05D001886 ORTHO05D005666 8.3e-156 554.3 430 67.9
CANSAT35G0217 Cannabis sativa HOM05D001886 ORTHO05D005666 3.2e-155 552.4 431 68.7
MD04G1123400 Malus domestica HOM05D001886 ORTHO05D005666 4.6e-154 548.5 428 67.5
Prupe.6G251100 Prunus persica HOM05D001886 ORTHO05D005666 4.6e-154 548.5 427 69.3
Gohir.A09G158000 Gossypium hirsutum HOM05D001886 ORTHO05D005666 6.0e-154 548.1 429 67.4
Gohir.D09G153300 Gossypium hirsutum HOM05D001886 ORTHO05D005666 6.0e-154 548.1 429 67.8
MD12G1139300 Malus domestica HOM05D001886 ORTHO05D005666 7.8e-154 547.7 423 68.1
Carub.0003s0857 Capsella rubella HOM05D001886 ORTHO05D005666 2.3e-153 546.2 430 67.4
Gorai.006G174800 Gossypium raimondii HOM05D001886 ORTHO05D005666 2.3e-153 546.2 429 67.6
Duzib093G1847 Durio zibethinus HOM05D001886 ORTHO05D005666 3.9e-153 545.4 429 67.4
Potri.006G083700 Populus trichocarpa HOM05D001886 ORTHO05D005666 5.1e-153 545.0 431 66.8
GSVIVG01025523001 Vitis vinifera HOM05D001886 ORTHO05D005666 8.6e-153 544.3 429 66.7
CSS0019310 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 1.5e-152 543.5 430 67.4
COL.COLO4_14849 Corchorus olitorius HOM05D001886 ORTHO05D005666 1.9e-152 543.1 429 66.4
DCAR_009246 Daucus carota HOM05D001886 ORTHO05D005666 5.6e-152 541.6 430 65.1
Oeu036166.1 Olea europaea HOM05D001886 ORTHO05D005666 1.6e-151 540.0 432 66.2
Oeu060049.1 Olea europaea HOM05D001886 ORTHO05D005666 2.8e-151 539.3 422 70.4
Aqoxy2G02037 Aquilegia oxysepala HOM05D001886 ORTHO05D005666 4.7e-151 538.5 413 68.3
Sc20g0004960 Simmondsia chinensis HOM05D001886 ORTHO05D005666 6.2e-151 538.1 430 64.7
THA.LOC104823252 Tarenaya hassleriana HOM05D001886 ORTHO05D005666 1.8e-150 536.6 429 66.9
AL3G20650 Arabidopsis lyrata HOM05D001886 ORTHO05D005666 4.0e-150 535.4 432 66.4
RcHm_v2.0_Chr3g0467171 Rosa chinensis HOM05D001886 ORTHO05D005666 5.2e-150 535.0 430 66.3
AT3G09470 Arabidopsis thaliana HOM05D001886 ORTHO05D005666 1.2e-149 533.9 432 66.4
Thhalv10020764m.g Eutrema salsugineum HOM05D001886 ORTHO05D005666 1.3e-148 530.4 429 65.7
FvH4_6g14211 Fragaria vesca HOM05D001886 ORTHO05D005666 2.9e-148 529.3 433 65.1
Eucgr.K03155 Eucalyptus grandis HOM05D001886 ORTHO05D005666 3.8e-148 528.9 437 64.3
Hma1.2p1_1707F.1_g298500 Hydrangea macrophylla HOM05D001886 ORTHO05D005666 6.4e-148 528.1 462 63.2
Cc06_g02890 Coffea canephora HOM05D001886 ORTHO05D005666 1.4e-147 526.9 437 64.3
FAN05G4892 Fragaria x ananassa HOM05D001886 ORTHO05D005666 2.4e-147 526.2 432 65.3
TWI74G1177 Tripterygium wilfordii HOM05D001886 ORTHO05D005666 2.4e-147 526.2 429 65.3
PSO339G5853 Papaver somniferum HOM05D001886 ORTHO05D005666 2.7e-146 522.7 432 66.2
Aa31LG3G1960 Aethionema arabicum HOM05D001886 ORTHO05D005666 4.6e-146 521.9 429 64.8
MELO3C009272.2 Cucumis melo HOM05D001886 ORTHO05D005666 4.6e-146 521.9 431 65.7
Sp3g07840 Schrenkiella parvula HOM05D001886 ORTHO05D005666 1.7e-145 520.0 429 65.3
CsaV3_3G035030 Cucumis sativus L. HOM05D001886 ORTHO05D005666 3.0e-145 519.2 431 65.2
BcaC05g29675 Brassica carinata HOM05D001886 ORTHO05D005666 3.9e-145 518.8 432 65.3
A05p39530 Brassica napus HOM05D001886 ORTHO05D005666 3.9e-145 518.8 432 65.7
C05p58560 Brassica napus HOM05D001886 ORTHO05D005666 3.9e-145 518.8 433 65.6
BolC5t34506H Brassica oleracea HOM05D001886 ORTHO05D005666 3.9e-145 518.8 433 65.8
Lj2A99T56 Lonicera japonica HOM05D001886 ORTHO05D005666 3.9e-145 518.8 372 72.6
PGR004G0312 Punica granatum HOM05D001886 ORTHO05D005666 5.1e-145 518.5 430 64.7
BraA05t22734Z Brassica rapa HOM05D001886 ORTHO05D005666 1.9e-144 516.5 432 65.5
TPR.G21472 Trifolium pratense HOM05D002608 ORTHO05D005666 2.5e-144 516.2 427 65.8
PSO339G4978 Papaver somniferum HOM05D001886 ORTHO05D005666 5.6e-144 515.0 429 66.2
PSO339G5613 Papaver somniferum HOM05D001886 ORTHO05D005666 5.6e-144 515.0 429 66.2
Ca_08782_v3 Cicer arietinum L. HOM05D001886 ORTHO05D005666 1.3e-143 513.8 436 64.4
Sed0005778 Sechium edule HOM05D001886 ORTHO05D005666 1.6e-143 513.5 430 64.4
ClCG00G003200 Citrullus lanatus HOM05D001886 ORTHO05D005666 2.1e-143 513.1 431 64.3
ClCG10G020980 Citrullus lanatus HOM05D001886 ORTHO05D005666 2.8e-143 512.7 431 64.3
MBI14_g24315_MAGBIO Magnolia biondii HOM05D001886 ORTHO05D005666 2.8e-143 512.7 430 63.3
Atru.chr8.1947 Acer truncatum HOM05D001886 ORTHO05D005666 3.6e-143 512.3 429 65.0
Hma1.2p1_1065F.1_g253710 Hydrangea macrophylla HOM05D001886 ORTHO05D005666 4.8e-143 511.9 434 64.7
PGR004G0538 Punica granatum HOM05D001886 ORTHO05D005666 1.1e-142 510.8 430 63.7
Medtr7g099890 Medicago truncatula HOM05D001886 ORTHO05D005666 1.4e-142 510.4 431 64.3
Lalb_Chr01g0019241 Lupinus albus HOM05D001886 ORTHO05D005666 6.9e-142 508.1 431 64.5
Medtr7g099910 Medicago truncatula HOM05D001886 ORTHO05D005666 1.5e-141 506.9 434 63.4
AUR62041035 Chenopodium quinoa HOM05D001886 ORTHO05D005666 3.4e-141 505.8 433 61.2
Nitab4.5_0003267g0040 Nicotiana tabacum HOM05D001886 ORTHO05D005666 1.3e-140 503.8 433 67.9
Hund10629 Selenicereus undatus HOM05D001886 ORTHO05D005666 2.2e-140 503.1 429 61.1
Prupe.6G251000 Prunus persica HOM05D001886 ORTHO05D005666 2.9e-140 502.7 433 62.6
Dinv35628 Davidia involucrata HOM05D001886 ORTHO05D005666 1.1e-139 500.7 427 65.1
Lj1g0000746 Lotus japonicus HOM05D001886 ORTHO05D005666 2.4e-139 499.6 434 62.2
THA.LOC104816289 Tarenaya hassleriana HOM05D001886 ORTHO05D005666 2.4e-139 499.6 412 64.1
arahy.Tifrunner.gnm1.ann1.LM62V2 Arachis hypogaea HOM05D001886 ORTHO05D005666 7.1e-139 498.0 428 63.6
Glyma.19G173000 Glycine max HOM05D001886 ORTHO05D005666 7.1e-139 498.0 430 62.8
ATR0559G352 Amborella trichopoda HOM05D001886 ORTHO05D005666 3.5e-138 495.7 435 60.0
PSO648G0053 Papaver somniferum HOM05D001886 ORTHO05D005666 7.8e-138 494.6 429 63.4
Medtr7g099870 Medicago truncatula HOM05D001886 ORTHO05D005666 1.0e-137 494.2 432 63.0
Ah.12g062350 Amaranthus hybridus HOM05D001886 ORTHO05D005666 3.0e-137 492.7 431 59.4
unitig_578.g15699 Utricularia gibba HOM05D001886 ORTHO05D005666 3.9e-137 492.3 432 61.3
MD04G1123300 Malus domestica HOM05D001886 ORTHO05D005666 2.5e-136 489.6 429 61.5
Sed0018380 Sechium edule HOM05D001886 ORTHO05D005666 9.6e-136 487.6 391 65.2
VMungo1383G3275 Vigna mungo HOM05D001886 ORTHO05D005666 6.2e-135 485.0 428 62.1
Glyma.03G172100 Glycine max HOM05D001886 ORTHO05D005666 8.1e-135 484.6 439 60.4
FAN09G1438 Fragaria x ananassa HOM05D001886 ORTHO05D005666 1.1e-134 484.2 515 54.0
Phvul.001G169800 Phaseolus vulgaris HOM05D001886 ORTHO05D005666 1.4e-134 483.8 428 62.4
Lj1g0019565 Lotus japonicus HOM05D001886 ORTHO05D005666 9.0e-134 481.1 405 63.2
FAN09G0883 Fragaria x ananassa HOM05D002354 ORTHO05D005666 1.3e-132 477.2 430 61.2
Psat3g049200 Pisum sativum HOM05D001886 ORTHO05D005666 2.2e-132 476.5 414 63.3
Lj1g0014450 Lotus japonicus HOM05D001886 ORTHO05D005666 4.9e-132 475.3 434 59.7
RcHm_v2.0_Chr3g0467181 Rosa chinensis HOM05D001886 ORTHO05D005666 4.9e-132 475.3 435 60.5
FvH4_6g14220 Fragaria vesca HOM05D001886 ORTHO05D005666 8.4e-132 474.6 429 60.8
Rhsim04G0155900 Rhododendron simsii HOM05D001886 ORTHO05D005666 1.4e-131 473.8 472 57.8
Nn2g10428 Nelumbo nucifera HOM05D001886 ORTHO05D005666 1.9e-131 473.4 428 62.4
FAN14G0919 Fragaria x ananassa HOM05D001886 ORTHO05D005666 2.1e-130 469.9 429 60.4
Lalb_Chr20g0113251 Lupinus albus HOM05D001886 ORTHO05D005666 2.5e-128 463.0 432 58.8
arahy.Tifrunner.gnm1.ann1.QN2KEZ Arachis hypogaea HOM05D001886 ORTHO05D005666 4.3e-128 462.2 428 61.0
Os12g0566900 Oryza sativa ssp. japonica HOM05D001886 ORTHO05D005666 7.4e-128 461.5 406 61.3
Zm00001eb028780 Zea mays HOM05D001886 ORTHO05D005666 9.6e-128 461.1 431 60.1
FAN09G1880 Fragaria x ananassa HOM05D001886 ORTHO05D005666 2.9e-124 449.5 430 59.3
CSS0035971 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 8.7e-121 438.0 431 58.9
AUR62041759 Chenopodium quinoa HOM05D001886 ORTHO05D005666 1.3e-119 434.1 432 56.2
CDE07G1313 Ceratophyllum demersum HOM05D001886 ORTHO05D005666 3.1e-118 429.5 428 55.6
Actinidia05302 Actinidia chinensis HOM05D001886 ORTHO05D005666 2.0e-117 426.8 430 56.0
SGA_v2.0_scaffold126G33811 Striga asiatica HOM05D001886 ORTHO05D005666 2.1e-114 416.8 432 57.2
vmacro08662 Vaccinium macrocarpon HOM05D001886 ORTHO05D005666 7.9e-114 414.8 509 49.9
HPP92_018059 Vanilla planifolia HOM05D001886 ORTHO05D005666 3.9e-113 412.5 436 53.9
Dinv37200 Davidia involucrata HOM05D001886 ORTHO05D005666 8.2e-111 404.8 313 69.3
TPR.G21468 Trifolium pratense HOM05D001886 ORTHO05D005666 1.8e-102 377.1 342 60.8
EL10As1g23100 Beta vulgaris HOM05D001886 ORTHO05D005666 3.4e-101 372.9 319 62.4
Psat3g049040 Pisum sativum HOM05D001886 ORTHO05D005666 1.9e-99 367.1 300 65.0
Lj2A2G29 Lonicera japonica HOM05D001886 ORTHO05D005666 2.1e-98 363.6 322 64.3
Mapoly0179s0003 Marchantia polymorpha HOM05D001886 ORTHO05D005666 1.1e-91 341.3 431 43.6
Pp3c8_1230 Physcomitrium patens HOM05D001886 ORTHO05D005666 5.7e-88 328.9 422 43.1
SEGI_05360 Sequoiadendron giganteum HOM05D001886 ORTHO05D005666 9.1e-86 321.6 275 58.9
Migut.O00944 Erythranthe guttata HOM05D001886 ORTHO05D005666 2.5e-83 313.5 323 56.7
CARHR083880 Cardamine hirsuta HOM05D001886 ORTHO05D005666 4.2e-75 286.2 250 61.2
Gohir.D04G119800 Gossypium hirsutum HOM05D001886 ORTHO05D005666 2.4e-70 270.4 424 42.7
Actinidia13134 Actinidia chinensis HOM05D001886 ORTHO05D005666 2.0e-69 267.3 201 70.6
Actinidia13133 Actinidia chinensis HOM05D001886 ORTHO05D005666 2.7e-69 266.9 178 73.6
CARHR083890 Cardamine hirsuta HOM05D001886 ORTHO05D005666 6.1e-66 255.8 177 74.0
Os12g0566800 Oryza sativa ssp. japonica HOM05D001886 ORTHO05D005666 4.9e-55 219.5 176 61.9
HPP92_018052 Vanilla planifolia HOM05D001886 ORTHO05D005666 8.3e-55 218.8 192 58.9
ATR0559G335 Amborella trichopoda HOM05D001886 ORTHO05D005666 6.2e-50 202.6 171 60.8
CSS0044683 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 1.8e-49 201.1 161 65.2
AagrBONN_evm.TU.Sc2ySwM_362.1966 Anthoceros agrestis HOM05D001886 ORTHO05D005666 1.2e-40 171.8 139 58.3
CSS0017297 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 4.4e-40 169.9 147 63.3
MD12G1139200 Malus domestica HOM05D001886 ORTHO05D005666 4.0e-33 146.7 242 41.7
Psat3g053880 Pisum sativum HOM05D000335 ORTHO05D005666 8.9e-33 145.6 120 67.5
BcaC05g29677 Brassica carinata HOM05D001886 ORTHO05D005666 2.0e-32 144.4 113 69.9
MD12G1139100 Malus domestica HOM05D001886 ORTHO05D005666 1.5e-24 118.2 89 65.2
Os12g0567000 Oryza sativa ssp. japonica HOM05D001886 ORTHO05D005666 7.1e-22 109.4 97 56.7
FAN02G0854 Fragaria x ananassa HOM05D001886 ORTHO05D005666 1.6e-18 98.2 94 57.4
FAN11G3241 Fragaria x ananassa HOM05D001164 ORTHO05D001031 9.0e-17 92.4 79 62.0
AagrBONN_evm.TU.Sc2ySwM_362.1965 Anthoceros agrestis HOM05D001886 ORTHO05D005666 2.6e-16 90.9 113 46.0
TAR636G1555 Trochodendron aralioides HOM05D001886 ORTHO05D005666 2.7e-13 80.9 329 27.7
Mapoly0174s0006 Marchantia polymorpha HOM05D001886 ORTHO05D005666 1.6e-10 71.6 373 24.7
SMO197G0098 Selaginella moellendorffii HOM05D001886 ORTHO05D005666 3.7e-10 70.5 419 24.6
Lsat_1_v5_gn_7_25540 Lactuca sativa HOM05D001886 ORTHO05D005666 1.1e-06 58.9 55 54.5
PSO782G2863 Papaver somniferum HOM05D004143 ORTHO05D004816 2.5e-06 57.8 204 27.9


User provided reference genes

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