Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen09g004710 Solanum pennellii HOM05D005118 ORTHO05D006038 1.8e-187 659.1 322 100.0
Solyc09g009960.3 Solanum lycopersicum HOM05D005118 ORTHO05D006038 6.6e-182 640.6 322 97.5
CAN.G397.66 Capsicum annuum HOM05D005118 ORTHO05D006038 2.3e-163 578.9 322 87.9
Peaxi162Scf00102g00213 Petunia axillaris HOM05D005118 ORTHO05D006038 6.6e-150 534.3 326 83.4
Nitab4.5_0001933g0040 Nicotiana tabacum HOM05D005118 ORTHO05D006038 4.9e-129 464.9 326 71.5
SalBow3G3316 Salvia bowleyana HOM05D005118 ORTHO05D006038 1.7e-113 413.3 319 63.6
GSVIVG01016776001 Vitis vinifera HOM05D005118 ORTHO05D006038 8.8e-110 401.0 313 63.6
Oeu056875.2 Olea europaea HOM05D005118 ORTHO05D006038 2.0e-109 399.8 315 63.8
CSS0000835 Camellia sinensis var. sinensis HOM05D005118 ORTHO05D006038 1.4e-107 393.7 327 60.6
Migut.J01020 Erythranthe guttata HOM05D005118 ORTHO05D006038 5.9e-106 388.3 319 61.4
Gorai.002G239100 Gossypium raimondii HOM05D005118 ORTHO05D006038 7.7e-106 387.9 313 60.7
Gohir.D01G195000 Gossypium hirsutum HOM05D005118 ORTHO05D006038 3.8e-105 385.6 314 59.9
Gohir.A01G205500 Gossypium hirsutum HOM05D005118 ORTHO05D006038 7.2e-104 381.3 307 59.9
Thecc.05G091100 Theobroma cacao HOM05D005118 ORTHO05D006038 7.2e-104 381.3 308 60.7
COL.COLO4_29702 Corchorus olitorius HOM05D005118 ORTHO05D006038 9.4e-104 380.9 314 60.5
Rhsim03G0072700 Rhododendron simsii HOM05D005118 ORTHO05D006038 9.4e-104 380.9 319 59.6
TAR365G0960 Trochodendron aralioides HOM05D005118 ORTHO05D006038 1.6e-103 380.2 307 59.6
Prupe.7G104300 Prunus persica HOM05D005118 ORTHO05D006038 1.5e-101 373.6 316 61.1
Ciclev10011946m.g Citrus clementina HOM05D005118 ORTHO05D006038 2.6e-101 372.9 332 56.3
Atru.chr8.1769 Acer truncatum HOM05D005118 ORTHO05D006038 3.3e-101 372.5 316 61.7
QL05p009399 Quercus lobata HOM05D005118 ORTHO05D006038 1.3e-100 370.5 317 59.0
Psat6g079520 Pisum sativum HOM05D005118 ORTHO05D006038 2.2e-100 369.8 321 57.3
Sabra06G0162900 Salix brachista HOM05D005118 ORTHO05D006038 2.8e-100 369.4 304 60.5
DCAR_013399 Daucus carota HOM05D005118 ORTHO05D006038 2.4e-99 366.3 317 59.0
Nitab4.5_0012129g0010 Nicotiana tabacum HOM05D005118 ORTHO05D006038 7.0e-99 364.8 316 61.4
TWI77G0553 Tripterygium wilfordii HOM05D005118 ORTHO05D006038 2.6e-98 362.8 310 58.7
Lj5g0005733 Lotus japonicus HOM05D005118 ORTHO05D006038 2.2e-97 359.8 309 56.3
CiPaw.09G015400 Carya illinoinensis HOM05D005118 ORTHO05D006038 1.1e-96 357.5 293 60.4
Nn2g14484 Nelumbo nucifera HOM05D005118 ORTHO05D006038 1.1e-96 357.5 302 57.3
TPR.G2549 Trifolium pratense HOM05D005118 ORTHO05D006038 1.5e-96 357.1 308 56.2
Ca_00895_v3 Cicer arietinum L. HOM05D005118 ORTHO05D006038 1.9e-96 356.7 313 56.5
PSO782G2273 Papaver somniferum HOM05D005118 ORTHO05D006038 3.2e-96 355.9 309 57.0
VMungo1309G0892 Vigna mungo HOM05D005118 ORTHO05D006038 4.2e-96 355.5 313 54.3
Oeu017686.1 Olea europaea HOM05D005118 ORTHO05D006038 5.5e-96 355.1 321 57.9
PSO063G5626 Papaver somniferum HOM05D005118 ORTHO05D006038 7.2e-96 354.8 309 57.0
Lalb_Chr10g0096391 Lupinus albus HOM05D005118 ORTHO05D006038 1.2e-95 354.0 307 56.0
Medtr8g095460 Medicago truncatula HOM05D005118 ORTHO05D006038 3.6e-95 352.4 311 57.9
MBI14_g17373_MAGBIO Magnolia biondii HOM05D005118 ORTHO05D006038 4.7e-95 352.1 304 56.2
Medtr1g059790 Medicago truncatula HOM05D005118 ORTHO05D006038 6.1e-95 351.7 308 56.8
Aqoxy3G03420 Aquilegia oxysepala HOM05D005118 ORTHO05D006038 8.0e-95 351.3 302 57.9
RcHm_v2.0_Chr3g0474251 Rosa chinensis HOM05D005118 ORTHO05D006038 1.0e-94 350.9 304 59.9
FAN09G1525 Fragaria x ananassa HOM05D005118 ORTHO05D006038 1.4e-94 350.5 318 58.8
Atru.chr8.1478 Acer truncatum HOM05D005118 ORTHO05D006038 1.8e-94 350.1 299 58.9
Glyma.13G154600 Glycine max HOM05D005118 ORTHO05D006038 5.2e-94 348.6 315 53.7
FvH4_6g19140 Fragaria vesca HOM05D005118 ORTHO05D006038 2.0e-93 346.7 316 58.5
FAN02G2546 Fragaria x ananassa HOM05D005118 ORTHO05D006038 2.6e-93 346.3 318 57.9
FAN14G1754 Fragaria x ananassa HOM05D005118 ORTHO05D006038 2.6e-93 346.3 316 58.5
FAN05G3536 Fragaria x ananassa HOM05D005118 ORTHO05D006038 5.7e-93 345.1 315 58.1
vmacro07419 Vaccinium macrocarpon HOM05D005118 ORTHO05D006038 9.7e-93 344.4 346 52.9
Sc02g0000340 Simmondsia chinensis HOM05D005118 ORTHO05D006038 4.8e-92 342.0 307 56.0
Lj6g0000791 Lotus japonicus HOM05D005118 ORTHO05D006038 8.2e-92 341.3 304 56.6
Lj6g0018590 Lotus japonicus HOM05D005118 ORTHO05D006038 8.2e-92 341.3 304 56.6
MD12G1027200 Malus domestica HOM05D005118 ORTHO05D006038 8.2e-92 341.3 315 56.5
arahy.Tifrunner.gnm1.ann1.72V09J Arachis hypogaea HOM05D005118 ORTHO05D006038 1.8e-91 340.1 313 52.1
arahy.Tifrunner.gnm1.ann1.W1QNQS Arachis hypogaea HOM05D005118 ORTHO05D006038 1.8e-91 340.1 313 52.1
ECA247G3083 Erigeron canadensis HOM05D005118 ORTHO05D006038 4.1e-91 339.0 290 57.6
HanXRQChr08g0212801 Helianthus annuus HOM05D005118 ORTHO05D006038 5.3e-91 338.6 299 57.9
CANSAT64G1535 Cannabis sativa HOM05D005118 ORTHO05D006038 9.1e-91 337.8 299 58.5
AUR62006198 Chenopodium quinoa HOM05D005118 ORTHO05D006038 1.6e-90 337.0 308 54.5
Peaxi162Scf00096g00416 Petunia axillaris HOM05D005118 ORTHO05D006038 2.0e-90 336.7 289 60.6
Phvul.007G152100 Phaseolus vulgaris HOM05D005118 ORTHO05D006038 7.7e-90 334.7 313 52.7
Rhsim03G0074200 Rhododendron simsii HOM05D005118 ORTHO05D006038 2.9e-89 332.8 319 54.5
TWI53G1403 Tripterygium wilfordii HOM05D005118 ORTHO05D006038 2.9e-89 332.8 278 59.7
EL10Ac7g16902 Beta vulgaris HOM05D001354 ORTHO05D007486 1.9e-88 330.1 293 59.4
Dinv21195 Davidia involucrata HOM05D005118 ORTHO05D006038 1.9e-88 330.1 251 66.1
Eucgr.A02654 Eucalyptus grandis HOM05D005118 ORTHO05D006038 1.9e-88 330.1 303 54.5
unitig_748.g8118 Utricularia gibba HOM05D005118 ORTHO05D006038 2.5e-88 329.7 311 53.7
ClCG08G004490 Citrullus lanatus HOM05D005118 ORTHO05D006038 7.5e-85 318.2 293 53.2
Sabra16G0082800 Salix brachista HOM05D005118 ORTHO05D006038 1.3e-84 317.4 353 48.4
MELO3C011647.2 Cucumis melo HOM05D005118 ORTHO05D006038 8.3e-84 314.7 293 52.2
CsaV3_6G003860 Cucumis sativus L. HOM05D005118 ORTHO05D006038 5.4e-83 312.0 293 51.9
Sed0011362 Sechium edule HOM05D005118 ORTHO05D006038 7.0e-83 311.6 295 52.2
AL3G23010 Arabidopsis lyrata HOM05D005118 ORTHO05D006038 1.6e-82 310.5 287 54.7
Carub.0005s0168 Capsella rubella HOM05D005118 ORTHO05D006038 3.5e-82 309.3 288 53.5
Lsat_1_v5_gn_9_20681 Lactuca sativa HOM05D005118 ORTHO05D006038 1.0e-81 307.8 278 56.8
Aa31LG3G4830 Aethionema arabicum HOM05D005118 ORTHO05D006038 1.3e-81 307.4 276 55.1
C05p56660 Brassica napus HOM05D005118 ORTHO05D006038 1.3e-81 307.4 289 54.0
BolC5t34331H Brassica oleracea HOM05D005118 ORTHO05D006038 1.3e-81 307.4 289 54.0
Lj6g0005905 Lotus japonicus HOM05D005118 ORTHO05D006038 3.8e-81 305.8 304 53.0
Sp3g09700 Schrenkiella parvula HOM05D005118 ORTHO05D006038 5.0e-81 305.4 288 52.4
A05p37870 Brassica napus HOM05D005118 ORTHO05D006038 6.5e-81 305.1 288 53.1
CARHR145210 Cardamine hirsuta HOM05D005118 ORTHO05D006038 8.5e-81 304.7 288 53.8
BraA05t22581Z Brassica rapa HOM05D005118 ORTHO05D006038 1.5e-80 303.9 288 53.1
SGA_v2.0_scaffold31G12903 Striga asiatica HOM05D005118 ORTHO05D006038 5.5e-80 302.0 230 63.0
THA.LOC104816589 Tarenaya hassleriana HOM05D005118 ORTHO05D006038 1.6e-79 300.4 270 54.8
Aa31LG3G4790 Aethionema arabicum HOM05D005118 ORTHO05D006038 3.6e-79 299.3 304 49.3
BcaB06g25621 Brassica carinata HOM05D005118 ORTHO05D006038 6.1e-79 298.5 284 52.5
AT3G11470 Arabidopsis thaliana HOM05D005118 ORTHO05D006038 2.3e-78 296.6 279 53.0
Cc06_g05990 Coffea canephora HOM05D005118 ORTHO05D006038 2.3e-78 296.6 225 64.0
Thhalv10018973m.g Eutrema salsugineum HOM05D005118 ORTHO05D006038 2.0e-77 293.5 289 52.2
Duzib093G2169 Durio zibethinus HOM05D005118 ORTHO05D006038 3.4e-77 292.7 225 64.0
ATR0618G287 Amborella trichopoda HOM05D005118 ORTHO05D006038 7.5e-77 291.6 278 51.8
PGSC0003DMG402008870 Solanum tuberosum HOM05D005118 ORTHO05D006038 4.1e-75 285.8 145 94.5
Lj2C139G10 Lonicera japonica HOM05D005118 ORTHO05D006038 1.2e-74 284.3 226 61.1
Zm00001eb000710 Zea mays HOM05D005118 ORTHO05D006038 2.0e-74 283.5 301 50.8
Dinv21192 Davidia involucrata HOM05D005118 ORTHO05D006038 1.3e-73 280.8 240 61.7
AUR62037021 Chenopodium quinoa HOM05D005118 ORTHO05D006038 3.8e-73 279.3 246 55.7
BcaC05g29371 Brassica carinata HOM05D005118 ORTHO05D006038 5.0e-73 278.9 289 50.9
Os08g0243100 Oryza sativa ssp. japonica HOM05D005118 ORTHO05D006038 5.0e-73 278.9 297 50.5
Potri.006G211300 Populus trichocarpa HOM05D005118 ORTHO05D006038 6.6e-73 278.5 206 66.5
HPP92_018124 Vanilla planifolia HOM05D005118 ORTHO05D006038 1.5e-72 277.3 292 48.3
Manes.08G026600 Manihot esculenta HOM05D005118 ORTHO05D006038 5.6e-72 275.4 321 46.4
AUR62017509 Chenopodium quinoa HOM05D005118 ORTHO05D006038 2.1e-71 273.5 309 47.2
Haze_12101 Corylus avellana HOM05D005118 ORTHO05D006038 1.4e-70 270.8 282 50.4
Sp3g13570 Schrenkiella parvula HOM05D005118 ORTHO05D006038 8.9e-70 268.1 293 50.5
PGR004G0063 Punica granatum HOM05D005118 ORTHO05D006038 2.0e-69 266.9 292 50.0
Thhalv10021266m.g Eutrema salsugineum HOM05D005118 ORTHO05D006038 3.4e-69 266.2 298 49.3
AT2G02765 Arabidopsis thaliana HOM05D005118 ORTHO05D006038 5.7e-69 265.4 208 61.1
Hund01804 Selenicereus undatus HOM05D005118 ORTHO05D006038 5.4e-67 258.8 305 45.6
BolC5t33871H Brassica oleracea HOM05D005118 ORTHO05D006038 2.0e-66 256.9 300 48.0
Ah.08g210500 Amaranthus hybridus HOM05D000892 ORTHO05D009371 7.8e-66 255.0 295 48.5
Rhsim03G0072000 Rhododendron simsii HOM05D005118 ORTHO05D006038 8.6e-65 251.5 236 55.9
SEGI_18237 Sequoiadendron giganteum HOM05D005118 ORTHO05D006038 7.3e-64 248.4 323 42.1
C05p51840 Brassica napus HOM05D005118 ORTHO05D006038 1.4e-59 234.2 293 45.4
BraA05t22230Z Brassica rapa HOM05D005118 ORTHO05D006038 3.1e-54 216.5 187 56.1
Mapoly0006s0252 Marchantia polymorpha HOM05D005118 ORTHO05D006038 3.1e-54 216.5 312 40.4
Pp3c5_18920 Physcomitrium patens HOM05D005118 ORTHO05D006038 4.4e-53 212.6 296 39.5
BcaB06g29561 Brassica carinata HOM05D005118 ORTHO05D006038 2.4e-51 206.8 295 41.0
HPP92_018147 Vanilla planifolia HOM05D005118 ORTHO05D006038 2.1e-50 203.8 214 46.3
Potri.016G078400 Populus trichocarpa HOM05D005118 ORTHO05D006038 6.0e-50 202.2 170 60.6
AagrBONN_evm.TU.Sc2ySwM_340.158 Anthoceros agrestis HOM05D005118 ORTHO05D006038 1.1e-48 198.0 299 41.1
AL5G11970 Arabidopsis lyrata HOM05D005118 ORTHO05D006038 1.4e-46 191.0 190 48.4
Cpa.g.sc5.3 Carica papaya HOM05D005118 ORTHO05D006038 5.8e-45 185.7 168 56.5
VMungo0720G0644 Vigna mungo HOM05D005118 ORTHO05D006038 5.8e-45 185.7 144 57.6
SMO144G0078 Selaginella moellendorffii HOM05D005118 ORTHO05D006038 7.6e-45 185.3 288 39.6
VMungo0720G2492 Vigna mungo HOM05D005118 ORTHO05D006038 1.3e-44 184.5 178 50.0
SMO118G0036 Selaginella moellendorffii HOM05D005118 ORTHO05D006038 4.1e-43 179.5 309 38.2
Sabra06G0126100 Salix brachista HOM05D005118 ORTHO05D006038 1.8e-38 164.1 198 46.5
FvH4_4g11630 Fragaria vesca HOM05D005118 ORTHO05D006038 4.6e-34 149.4 223 41.7
BcaC05g28982 Brassica carinata HOM05D005118 ORTHO05D006038 7.8e-34 148.7 256 38.7
MD14G1027400 Malus domestica HOM05D005118 ORTHO05D006038 5.1e-33 146.0 162 48.1
FAN12G1659 Fragaria x ananassa HOM05D005118 ORTHO05D006038 3.6e-31 139.8 106 63.2
Glyma.10G074300 Glycine max HOM05D005118 ORTHO05D006038 9.3e-27 125.2 118 52.5
TPR.G14778 Trifolium pratense HOM05D005118 ORTHO05D006038 5.1e-25 119.4 120 49.2
A05p34090 Brassica napus HOM05D005118 ORTHO05D006038 6.7e-25 119.0 180 37.2
PRCOL_00003909 Prasinoderma coloniale HOM05D005118 ORTHO05D006038 1.8e-22 110.9 201 37.3
CDE02G4411 Ceratophyllum demersum HOM05D000588 ORTHO05D000637 5.5e-19 99.4 117 47.9
AUR62015050 Chenopodium quinoa HOM05D005118 ORTHO05D006038 1.6e-18 97.8 286 29.0
Ah.16g107780 Amaranthus hybridus HOM05D005118 ORTHO05D006038 2.1e-18 97.4 86 55.8
MCO02G431 Micromonas commoda HOM05D005118 ORTHO05D006038 9.6e-16 88.6 352 25.3
CARHR086010 Cardamine hirsuta HOM05D005118 ORTHO05D006038 1.6e-15 87.8 110 44.5
Carub.0003s1079 Capsella rubella HOM05D005118 ORTHO05D006038 1.4e-14 84.7 102 48.0
SEGI_32763 Sequoiadendron giganteum HOM05D005118 ORTHO05D006038 2.4e-14 84.0 108 40.7
CBR_g30340 Chara braunii HOM05D005118 ORTHO05D006038 2.9e-12 77.0 209 28.2
Hund15021 Selenicereus undatus HOM05D005118 ORTHO05D006038 1.9e-11 74.3 59 59.3
BcaB06g25617 Brassica carinata HOM05D005118 ORTHO05D006038 2.5e-11 73.9 48 68.8
BcaB06g25618 Brassica carinata HOM05D005118 ORTHO05D006038 2.5e-11 73.9 48 68.8
Lj2E139T0 Lonicera japonica HOM05D005118 ORTHO05D006038 2.1e-10 70.9 56 53.6
Cre01.g018500 Chlamydomonas reinhardtii HOM05D005118 ORTHO05D006038 1.5e-08 64.7 163 30.7
Sopen11g002850 Solanum pennellii HOM05D007318 ORTHO05D009289 7.4e-08 62.4 253 27.3
Eucgr.J00256 Eucalyptus grandis HOM05D007318 ORTHO05D009289 2.8e-07 60.5 224 25.0
Nitab4.5_0011538g0040 Nicotiana tabacum HOM05D007318 ORTHO05D009289 2.8e-07 60.5 225 27.6
Cc02_g09660 Coffea canephora HOM05D007318 ORTHO05D009289 1.8e-06 57.8 223 25.1
Glyma.15G117500 Glycine max HOM05D007318 ORTHO05D009289 4.1e-06 56.6 224 26.8
PGR044G0176 Punica granatum HOM05D007318 ORTHO05D009289 5.3e-06 56.2 159 27.7
CAN.G645.12 Capsicum annuum HOM05D007318 ORTHO05D009289 6.9e-06 55.8 224 27.2
Lalb_Chr01g0010421 Lupinus albus HOM05D007318 ORTHO05D009289 6.9e-06 55.8 223 25.6


User provided reference genes

Program Settings