Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen09g004610 Solanum pennellii HOM05D005900 ORTHO05D007306 7.4e-113 410.6 216 100.0
Solyc09g009850.4 Solanum lycopersicum HOM05D005900 ORTHO05D007306 3.4e-110 401.7 216 98.1
PGSC0003DMG400008953 Solanum tuberosum HOM05D005900 ORTHO05D007306 1.1e-108 396.7 216 96.3
PGSC0003DMG400022718 Solanum tuberosum HOM05D005900 ORTHO05D007306 5.3e-103 377.9 219 90.9
Solyc01g008760.4 Solanum lycopersicum HOM05D005900 ORTHO05D007306 8.2e-96 354.0 218 88.5
Nitab4.5_0000059g0460 Nicotiana tabacum HOM05D005900 ORTHO05D007306 3.1e-79 298.9 236 73.7
Nitab4.5_0000191g0220 Nicotiana tabacum HOM05D005900 ORTHO05D007306 3.6e-75 285.4 236 72.0
Peaxi162Scf00698g00117 Petunia axillaris HOM05D005900 ORTHO05D007306 1.1e-68 263.8 237 66.2
Peaxi162Scf00079g01513 Petunia axillaris HOM05D005900 ORTHO05D007306 2.1e-67 259.6 247 64.4
Oeu055297.1 Olea europaea HOM05D005900 ORTHO05D007306 8.3e-56 221.1 229 59.8
GSVIVG01001102001 Vitis vinifera HOM05D005900 ORTHO05D007306 2.4e-55 219.5 221 59.3
Cc04_g15880 Coffea canephora HOM05D005900 ORTHO05D007306 7.1e-55 218.0 222 57.7
Dinv35828 Davidia involucrata HOM05D005900 ORTHO05D007306 2.3e-53 213.0 236 55.5
Hma1.2p1_1494F.1_g286930 Hydrangea macrophylla HOM05D005900 ORTHO05D007306 6.2e-51 204.9 244 51.2
Oeu001539.2 Olea europaea HOM05D005900 ORTHO05D007306 2.6e-49 199.5 280 48.9
CSS0005312 Camellia sinensis var. sinensis HOM05D005900 ORTHO05D007306 2.2e-48 196.4 214 55.6
TAR371G1211 Trochodendron aralioides HOM05D005900 ORTHO05D007306 4.9e-48 195.3 246 52.0
MSTRG.22403 Avicennia marina HOM05D005900 ORTHO05D007306 9.2e-47 191.0 230 52.6
SGA_v2.0_scaffold154G37193 Striga asiatica HOM05D005900 ORTHO05D007306 6.0e-46 188.3 230 52.6
vmacro15379 Vaccinium macrocarpon HOM05D005900 ORTHO05D007306 7.8e-46 188.0 255 48.6
TAR629G1598 Trochodendron aralioides HOM05D005900 ORTHO05D007306 1.0e-45 187.6 230 50.4
Rhsim12G0016500 Rhododendron simsii HOM05D005900 ORTHO05D007306 1.7e-45 186.8 234 49.1
CsaV3_4G033440 Cucumis sativus L. HOM05D005900 ORTHO05D007306 2.5e-44 183.0 239 48.1
QL03p048972 Quercus lobata HOM05D005900 ORTHO05D007306 2.5e-44 183.0 226 51.8
SGA_v2.0_scaffold28G11983 Striga asiatica HOM05D005900 ORTHO05D007306 2.5e-44 183.0 229 52.4
Dinv16498 Davidia involucrata HOM05D005900 ORTHO05D007306 3.3e-44 182.6 207 56.0
Atru.chr12.1436 Acer truncatum HOM05D005900 ORTHO05D007306 6.2e-43 178.3 227 48.9
DCAR_030841 Daucus carota HOM05D005900 ORTHO05D007306 1.1e-42 177.6 212 50.9
SalBow2G0170 Salvia bowleyana HOM05D005900 ORTHO05D007306 2.2e-40 169.9 204 53.9
Migut.C01115 Erythranthe guttata HOM05D005900 ORTHO05D007306 6.4e-40 168.3 220 49.1
MBI11_g07033_MAGBIO Magnolia biondii HOM05D005900 ORTHO05D007306 1.1e-39 167.5 232 47.8
PGR102G3094 Punica granatum HOM05D005900 ORTHO05D007306 1.1e-39 167.5 224 46.4
Lsat_1_v5_gn_2_95001 Lactuca sativa HOM05D005900 ORTHO05D007306 1.9e-39 166.8 214 47.2
TWI36G0396 Tripterygium wilfordii HOM05D005900 ORTHO05D007306 4.2e-39 165.6 193 51.8
CiPaw.03G184600 Carya illinoinensis HOM05D005900 ORTHO05D007306 5.4e-39 165.2 172 55.2
CANSAT80G1963 Cannabis sativa HOM05D005900 ORTHO05D007306 1.0e-37 161.0 223 48.9
CiPaw.05G100400 Carya illinoinensis HOM05D005900 ORTHO05D007306 1.7e-37 160.2 213 50.2
CANSAT80G1771 Cannabis sativa HOM05D005900 ORTHO05D007306 3.0e-37 159.5 223 48.9
Migut.C00405 Erythranthe guttata HOM05D005900 ORTHO05D007306 3.9e-37 159.1 223 46.6
Hund20854 Selenicereus undatus HOM05D005900 ORTHO05D007306 6.6e-37 158.3 220 48.2
Sed0015511 Sechium edule HOM05D005900 ORTHO05D007306 1.9e-36 156.8 232 46.1
FAN07G0479 Fragaria x ananassa HOM05D005900 ORTHO05D007306 2.5e-36 156.4 223 47.1
FvH4_4g22530 Fragaria vesca HOM05D005900 ORTHO05D007306 7.3e-36 154.8 223 46.6
FAN12G4206 Fragaria x ananassa HOM05D005900 ORTHO05D007306 7.3e-36 154.8 223 46.6
Eucgr.B02910 Eucalyptus grandis HOM05D005900 ORTHO05D007306 1.6e-35 153.7 238 44.1
FAN17G1441 Fragaria x ananassa HOM05D005900 ORTHO05D007306 1.6e-35 153.7 150 56.0
vmacro01013 Vaccinium macrocarpon HOM05D005900 ORTHO05D007306 1.6e-35 153.7 265 41.9
Cpa.g.sc36.199 Carica papaya HOM05D005900 ORTHO05D007306 2.1e-35 153.3 248 44.0
ClCG11G017800 Citrullus lanatus HOM05D005900 ORTHO05D007306 2.8e-35 152.9 234 44.0
AUR62006518 Chenopodium quinoa HOM05D005900 ORTHO05D007306 3.6e-35 152.5 216 46.8
Ciclev10005823m.g Citrus clementina HOM05D005900 ORTHO05D007306 3.6e-35 152.5 226 44.7
Eucgr.E01503 Eucalyptus grandis HOM05D005900 ORTHO05D007306 3.6e-35 152.5 238 45.0
Sc06g0007790 Simmondsia chinensis HOM05D005900 ORTHO05D007306 3.6e-35 152.5 218 49.1
EL10Ac1g01696 Beta vulgaris HOM05D005900 ORTHO05D007306 8.1e-35 151.4 217 45.6
AUR62025013 Chenopodium quinoa HOM05D005900 ORTHO05D007306 1.8e-34 150.2 216 45.8
Gorai.002G021100 Gossypium raimondii HOM05D005900 ORTHO05D007306 1.8e-34 150.2 226 45.6
RcHm_v2.0_Chr4g0428761 Rosa chinensis HOM05D005900 ORTHO05D007306 4.0e-34 149.1 237 43.5
Cfa010215 Carpinus fangiana HOM05D005900 ORTHO05D007306 5.3e-34 148.7 230 46.1
Prupe.1G213900 Prunus persica HOM05D005900 ORTHO05D007306 5.3e-34 148.7 216 48.1
Sabra01G0047700 Salix brachista HOM05D005900 ORTHO05D007306 5.3e-34 148.7 231 44.6
Gohir.D01G018900 Gossypium hirsutum HOM05D005900 ORTHO05D007306 1.2e-33 147.5 226 45.1
COL.COLO4_27171 Corchorus olitorius HOM05D005900 ORTHO05D007306 3.4e-33 146.0 243 42.8
TWI18G0365 Tripterygium wilfordii HOM05D005900 ORTHO05D007306 3.4e-33 146.0 212 45.8
arahy.Tifrunner.gnm1.ann1.5NZU5R Arachis hypogaea HOM05D005900 ORTHO05D007306 5.8e-33 145.2 227 44.9
PSO170G6181 Papaver somniferum HOM05D005900 ORTHO05D007306 7.6e-33 144.8 209 46.9
arahy.Tifrunner.gnm1.ann1.UQH0GN Arachis hypogaea HOM05D005900 ORTHO05D007306 1.3e-32 144.1 227 44.5
Gohir.A01G020300 Gossypium hirsutum HOM05D005900 ORTHO05D007306 2.2e-32 143.3 215 43.7
PSO017G3279 Papaver somniferum HOM05D005900 ORTHO05D007306 2.2e-32 143.3 176 48.9
Haze_24259 Corylus avellana HOM05D005900 ORTHO05D007306 1.1e-31 141.0 230 46.1
CDE09G0879 Ceratophyllum demersum HOM05D005900 ORTHO05D007306 1.4e-31 140.6 224 43.3
Thecc.02G191100 Theobroma cacao HOM05D005900 ORTHO05D007306 1.9e-31 140.2 241 44.0
Potri.001G068500 Populus trichocarpa HOM05D005900 ORTHO05D007306 7.1e-31 138.3 231 42.9
Cfa011664 Carpinus fangiana HOM05D005900 ORTHO05D007306 6.0e-30 135.2 230 42.6
Ca_23210_v3 Cicer arietinum L. HOM05D005900 ORTHO05D007306 1.8e-29 133.7 211 41.2
Ca_13888_v3 Cicer arietinum L. HOM05D005900 ORTHO05D007306 6.7e-29 131.7 215 40.5
Aa31LG1G17260 Aethionema arabicum HOM05D005900 ORTHO05D007306 1.5e-28 130.6 219 43.8
Os01g0259900 Oryza sativa ssp. japonica HOM05D005900 ORTHO05D007306 1.5e-28 130.6 233 41.6
CSS0033783 Camellia sinensis var. sinensis HOM05D005900 ORTHO05D007306 1.9e-28 130.2 164 54.9
Lalb_Chr15g0079851 Lupinus albus HOM05D005900 ORTHO05D007306 1.9e-28 130.2 231 39.4
Zm00001eb127900 Zea mays HOM05D005900 ORTHO05D007306 4.3e-28 129.0 221 42.1
MD16G1142000 Malus domestica HOM05D005900 ORTHO05D007306 7.4e-28 128.3 204 43.6
Sp2g27740 Schrenkiella parvula HOM05D005900 ORTHO05D007306 2.1e-27 126.7 215 40.9
MD13G1131700 Malus domestica HOM05D005900 ORTHO05D007306 4.8e-27 125.6 205 43.9
BraA02t09265Z Brassica rapa HOM05D005900 ORTHO05D007306 8.1e-27 124.8 202 41.1
A02p43400 Brassica napus HOM05D005900 ORTHO05D007306 1.1e-26 124.4 202 41.1
ECA238G4295 Erigeron canadensis HOM05D005900 ORTHO05D007306 1.1e-26 124.4 202 41.6
Psat4g204640 Pisum sativum HOM05D005900 ORTHO05D007306 1.4e-26 124.0 208 42.3
Sopen01g004270 Solanum pennellii HOM05D005900 ORTHO05D007306 1.8e-26 123.6 92 85.9
C02p63500 Brassica napus HOM05D005900 ORTHO05D007306 2.4e-26 123.2 202 40.6
THA.LOC104799437 Tarenaya hassleriana HOM05D005900 ORTHO05D007306 4.0e-26 122.5 211 44.1
BcaC03g18270 Brassica carinata HOM05D005900 ORTHO05D007306 5.3e-26 122.1 202 40.1
Os08g0422600 Oryza sativa ssp. japonica HOM05D005900 ORTHO05D007306 9.0e-26 121.3 213 38.5
C03p61480 Brassica napus HOM05D005900 ORTHO05D007306 5.8e-25 118.6 227 39.2
BolC2t12415H Brassica oleracea HOM05D005900 ORTHO05D007306 9.9e-25 117.9 203 40.4
BcaC08g46818 Brassica carinata HOM05D005900 ORTHO05D007306 1.3e-24 117.5 148 44.6
BcaB07g29751 Brassica carinata HOM05D005900 ORTHO05D007306 1.7e-24 117.1 202 40.1
BolC6t39862H Brassica oleracea HOM05D005900 ORTHO05D007306 1.7e-24 117.1 148 44.6
Cc04_g15860 Coffea canephora HOM05D005900 ORTHO05D007306 2.9e-24 116.3 78 65.4
Medtr8g012410 Medicago truncatula HOM05D005900 ORTHO05D007306 6.4e-24 115.2 216 37.5
Thhalv10004934m.g Eutrema salsugineum HOM05D005900 ORTHO05D007306 3.2e-23 112.8 212 40.6
Glyma.13G175800 Glycine max HOM05D005900 ORTHO05D007306 5.5e-23 112.1 221 41.6
ATR0582G041 Amborella trichopoda HOM05D005900 ORTHO05D007306 2.1e-22 110.2 183 39.3
Manes.08G100300 Manihot esculenta HOM05D005900 ORTHO05D007306 7.9e-22 108.2 161 42.9
TPR.G16445 Trifolium pratense HOM05D005900 ORTHO05D007306 3.0e-21 106.3 215 38.1
Glyma.07G200400 Glycine max HOM05D005900 ORTHO05D007306 6.7e-21 105.1 221 41.6
Lj3g0021746 Lotus japonicus HOM05D005900 ORTHO05D007306 8.7e-21 104.8 223 35.9
MELO3C032361.2 Cucumis melo HOM05D005900 ORTHO05D007306 5.6e-20 102.1 183 42.1
Aqoxy4G02969 Aquilegia oxysepala HOM05D005900 ORTHO05D007306 9.6e-20 101.3 195 40.5
BcaB04g19984 Brassica carinata HOM05D005900 ORTHO05D007306 2.8e-19 99.8 161 39.8
Duzib052G0736 Durio zibethinus HOM05D005900 ORTHO05D007306 3.7e-19 99.4 249 36.1
Lj6g0004130 Lotus japonicus HOM05D005900 ORTHO05D007306 6.2e-19 98.6 229 36.7
unitig_747.g21266 Utricularia gibba HOM05D005900 ORTHO05D007306 8.1e-19 98.2 231 33.3
AL8G42100 Arabidopsis lyrata HOM05D005900 ORTHO05D007306 1.1e-18 97.8 206 37.9
VMungo0331G1117 Vigna mungo HOM05D005900 ORTHO05D007306 1.1e-18 97.8 214 40.2
Ca_13890_v3 Cicer arietinum L. HOM05D005900 ORTHO05D007306 1.4e-18 97.4 91 50.5
VMungo0251G3272 Vigna mungo HOM05D005900 ORTHO05D007306 6.9e-18 95.1 213 40.4
Phvul.002G231200 Phaseolus vulgaris HOM05D005900 ORTHO05D007306 1.7e-16 90.5 212 37.3
Aqoxy83s001 Aquilegia oxysepala HOM05D005900 ORTHO05D007306 4.2e-15 85.9 155 41.3
Aqoxy4G03322 Aquilegia oxysepala HOM05D005900 ORTHO05D007306 7.1e-15 85.1 155 41.3
AT5G64680 Arabidopsis thaliana HOM05D005900 ORTHO05D007306 2.1e-14 83.6 178 34.3
Carub.0008s2548 Capsella rubella HOM05D005900 ORTHO05D007306 2.7e-14 83.2 172 36.6
Atru.chr12.1335 Acer truncatum HOM05D005900 ORTHO05D007306 1.5e-12 77.4 68 51.5
Aqoxy2G04193 Aquilegia oxysepala HOM05D005900 ORTHO05D007306 1.3e-11 74.3 140 40.7
SEGI_10970 Sequoiadendron giganteum HOM05D005900 ORTHO05D007306 9.0e-10 68.2 236 30.1
CARHR278660 Cardamine hirsuta HOM05D005900 ORTHO05D007306 6.5e-08 62.0 191 32.5
Nn3g20876 Nelumbo nucifera HOM05D005900 ORTHO05D007306 5.5e-07 58.9 43 60.5


User provided reference genes

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