Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen09g004390 Solanum pennellii HOM05D005679 ORTHO05D007228 1.2e-183 646.4 324 100.0
Solyc09g009630.3 Solanum lycopersicum HOM05D005679 ORTHO05D007228 1.4e-176 622.9 324 96.6
PGSC0003DMG401002654 Solanum tuberosum HOM05D005679 ORTHO05D007228 2.3e-174 615.5 324 95.4
Peaxi162Scf00040g01117 Petunia axillaris HOM05D005679 ORTHO05D007228 9.0e-155 550.4 307 87.9
Nitab4.5_0002400g0100 Nicotiana tabacum HOM05D005679 ORTHO05D007228 1.7e-137 493.0 339 76.4
Nitab4.5_0001725g0030 Nicotiana tabacum HOM05D005679 ORTHO05D007228 3.8e-137 491.9 324 79.0
Hma1.2p1_0536F.1_g174040 Hydrangea macrophylla HOM05D005679 ORTHO05D007228 6.5e-121 438.0 308 70.5
Oeu047193.1 Olea europaea HOM05D005679 ORTHO05D007228 2.5e-120 436.0 313 68.4
MSTRG.5837 Avicennia marina HOM05D005679 ORTHO05D007228 5.2e-118 428.3 308 67.9
Migut.J01051 Erythranthe guttata HOM05D005679 ORTHO05D007228 3.7e-116 422.2 307 67.1
CiPaw.09G012600 Carya illinoinensis HOM05D005679 ORTHO05D007228 9.1e-115 417.5 307 66.1
Cc06_g05640 Coffea canephora HOM05D005679 ORTHO05D007228 1.6e-114 416.8 310 64.8
GSVIVG01033827001 Vitis vinifera HOM05D005679 ORTHO05D007228 1.3e-113 413.7 312 63.8
TAR633G0672 Trochodendron aralioides HOM05D005679 ORTHO05D007228 1.5e-112 410.2 309 63.4
CAN.G397.28 Capsicum annuum HOM05D005679 ORTHO05D007228 1.9e-112 409.8 223 89.7
Dinv21221 Davidia involucrata HOM05D005679 ORTHO05D007228 1.9e-112 409.8 309 67.0
Rhsim03G0076400 Rhododendron simsii HOM05D005679 ORTHO05D007228 2.5e-112 409.5 307 65.5
SGA_v2.0_scaffold13G06736 Striga asiatica HOM05D005679 ORTHO05D007228 8.8e-110 401.0 295 66.8
arahy.Tifrunner.gnm1.ann1.J82H2E Arachis hypogaea HOM05D005679 ORTHO05D007228 1.2e-109 400.6 307 62.5
arahy.Tifrunner.gnm1.ann1.5KE53F Arachis hypogaea HOM05D005679 ORTHO05D007228 4.4e-109 398.7 305 63.3
COL.COLO4_29768 Corchorus olitorius HOM05D005679 ORTHO05D007228 1.7e-108 396.7 309 63.1
Atru.chr8.1566 Acer truncatum HOM05D005679 ORTHO05D007228 2.2e-108 396.4 305 63.3
Actinidia05440 Actinidia chinensis HOM05D005679 ORTHO05D007228 2.8e-108 396.0 307 62.5
Ciclev10012247m.g Citrus clementina HOM05D005679 ORTHO05D007228 2.8e-108 396.0 307 64.2
Sabra06G0062900 Salix brachista HOM05D005679 ORTHO05D007228 8.3e-108 394.4 302 64.2
vmacro07401 Vaccinium macrocarpon HOM05D005679 ORTHO05D007228 1.1e-107 394.0 329 60.8
MD12G1023600 Malus domestica HOM05D005679 ORTHO05D007228 3.1e-107 392.5 306 62.7
Lsat_1_v5_gn_1_48041 Lactuca sativa HOM05D005679 ORTHO05D007228 5.3e-107 391.7 314 63.4
VMungo0720G0655 Vigna mungo HOM05D005679 ORTHO05D007228 7.0e-107 391.3 310 60.3
Potri.006G083300 Populus trichocarpa HOM05D005679 ORTHO05D007228 9.1e-107 391.0 304 63.5
Lalb_Chr21g0315771 Lupinus albus HOM05D005679 ORTHO05D007228 1.6e-106 390.2 305 62.3
Thecc.05G087100 Theobroma cacao HOM05D005679 ORTHO05D007228 2.0e-106 389.8 310 63.5
MD14G1020800 Malus domestica HOM05D005679 ORTHO05D007228 2.9e-105 386.0 306 61.4
Duzib093G1300 Durio zibethinus HOM05D005679 ORTHO05D007228 3.8e-105 385.6 307 63.2
HanXRQChr10g0313901 Helianthus annuus HOM05D005679 ORTHO05D007228 3.8e-105 385.6 311 62.4
PGR004G0569 Punica granatum HOM05D005679 ORTHO05D007228 3.8e-105 385.6 310 60.3
Glyma.13G153052 Glycine max HOM05D005679 ORTHO05D007228 5.0e-105 385.2 307 60.9
Phvul.007G229100 Phaseolus vulgaris HOM05D005679 ORTHO05D007228 5.0e-105 385.2 307 60.6
Gohir.D04G100800 Gossypium hirsutum HOM05D005679 ORTHO05D007228 1.1e-104 384.0 308 60.7
Gohir.A04G063700 Gossypium hirsutum HOM05D005679 ORTHO05D007228 1.9e-104 383.3 308 60.7
Gorai.009G404000 Gossypium raimondii HOM05D005679 ORTHO05D007228 3.2e-104 382.5 308 60.7
PSO339G3946 Papaver somniferum HOM05D005679 ORTHO05D007228 4.2e-104 382.1 305 60.3
CANSAT80G1368 Cannabis sativa HOM05D005679 ORTHO05D007228 4.7e-103 378.6 308 58.8
Medtr1g060300 Medicago truncatula HOM05D005679 ORTHO05D007228 6.1e-103 378.3 305 57.4
ClCG10G019090 Citrullus lanatus HOM05D005679 ORTHO05D007228 8.0e-103 377.9 307 59.9
Lj5g0006681 Lotus japonicus HOM05D005679 ORTHO05D007228 1.8e-102 376.7 306 59.2
CsaV3_3G037160 Cucumis sativus L. HOM05D005679 ORTHO05D007228 3.0e-102 375.9 307 59.6
Psat6g080840 Pisum sativum HOM05D005679 ORTHO05D007228 3.0e-102 375.9 305 58.0
RcHm_v2.0_Chr3g0472981 Rosa chinensis HOM05D005679 ORTHO05D007228 4.0e-102 375.6 306 59.8
MELO3C009462.2 Cucumis melo HOM05D005679 ORTHO05D007228 5.2e-102 375.2 307 59.3
PSO384G2019 Papaver somniferum HOM05D005679 ORTHO05D007228 1.5e-101 373.6 308 59.4
HanXRQChr13g0424691 Helianthus annuus HOM05D005679 ORTHO05D007228 4.4e-101 372.1 295 63.1
HanXRQChr11g0340241 Helianthus annuus HOM05D005679 ORTHO05D007228 7.5e-101 371.3 311 62.1
Nn6g34939 Nelumbo nucifera HOM05D005679 ORTHO05D007228 9.8e-101 370.9 328 57.0
Manes.09G056451 Manihot esculenta HOM05D005679 ORTHO05D007228 4.8e-100 368.6 306 58.8
FAN14G3109 Fragaria x ananassa HOM05D005679 ORTHO05D007228 8.3e-100 367.9 306 59.5
FvH4_6g18450 Fragaria vesca HOM05D005679 ORTHO05D007228 2.4e-99 366.3 306 59.2
Eucgr.A01508 Eucalyptus grandis HOM05D005679 ORTHO05D007228 4.1e-99 365.5 310 58.7
FAN05G0675 Fragaria x ananassa HOM05D005679 ORTHO05D007228 4.1e-99 365.5 306 58.2
TPR.G31118 Trifolium pratense HOM05D005679 ORTHO05D007228 4.1e-99 365.5 306 57.2
BcaB01g03852 Brassica carinata HOM05D005679 ORTHO05D007228 5.4e-99 365.2 317 58.0
THA.LOC104807091 Tarenaya hassleriana HOM05D005679 ORTHO05D007228 7.0e-99 364.8 310 57.7
Aqoxy4G02804 Aquilegia oxysepala HOM05D005679 ORTHO05D007228 9.1e-99 364.4 307 58.6
Sp4g18530 Schrenkiella parvula HOM05D005679 ORTHO05D007228 3.5e-98 362.5 310 59.4
Carub.0004s1806 Capsella rubella HOM05D005679 ORTHO05D007228 5.9e-98 361.7 312 57.7
A03p20010 Brassica napus HOM05D005679 ORTHO05D007228 1.3e-97 360.5 313 57.2
BraA03t11252Z Brassica rapa HOM05D005679 ORTHO05D007228 1.3e-97 360.5 313 57.2
Sc02g0000910 Simmondsia chinensis HOM05D005679 ORTHO05D007228 1.7e-97 360.1 297 61.3
Aa31LG5G21440 Aethionema arabicum HOM05D005679 ORTHO05D007228 2.9e-97 359.4 310 58.1
BcaC01g05669 Brassica carinata HOM05D005679 ORTHO05D007228 3.8e-97 359.0 311 56.9
AL4G32420 Arabidopsis lyrata HOM05D005679 ORTHO05D007228 5.0e-97 358.6 310 57.7
BolC3t14741H Brassica oleracea HOM05D005679 ORTHO05D007228 1.5e-96 357.1 311 56.6
AT2G36305 Arabidopsis thaliana HOM05D005679 ORTHO05D007228 3.3e-96 355.9 310 56.1
C03p23450 Brassica napus HOM05D005679 ORTHO05D007228 7.2e-96 354.8 312 56.7
Thhalv10016950m.g Eutrema salsugineum HOM05D005679 ORTHO05D007228 3.6e-95 352.4 309 56.0
QL07p039311 Quercus lobata HOM05D005679 ORTHO05D007228 4.0e-94 349.0 263 67.7
TWI77G0106 Tripterygium wilfordii HOM05D005679 ORTHO05D007228 9.8e-93 344.4 276 62.7
FAN02G2684 Fragaria x ananassa HOM05D005679 ORTHO05D007228 1.3e-92 344.0 315 55.6
Glyma.10G071200 Glycine max HOM05D005679 ORTHO05D007228 1.6e-90 337.0 307 54.4
Haze_19592 Corylus avellana HOM05D005679 ORTHO05D007228 7.8e-90 334.7 276 64.5
SHI23954 Sapria himalayana HOM05D005679 ORTHO05D007228 9.5e-88 327.8 306 54.2
ECA248G1272 Erigeron canadensis HOM05D005679 ORTHO05D007228 6.8e-86 321.6 259 62.9
TWI53G0317 Tripterygium wilfordii HOM05D005679 ORTHO05D007228 6.8e-86 321.6 269 60.2
EL10Ac7g16934 Beta vulgaris HOM05D005679 ORTHO05D007228 8.9e-86 321.2 307 55.0
ATR0568G150 Amborella trichopoda HOM05D005679 ORTHO05D007228 9.8e-85 317.8 264 60.6
FAN05G4213 Fragaria x ananassa HOM05D005679 ORTHO05D007228 8.3e-84 314.7 271 57.9
Ah.08g210640 Amaranthus hybridus HOM05D005679 ORTHO05D007228 4.1e-83 312.4 308 53.9
CSS0002811 Camellia sinensis var. sinensis HOM05D005679 ORTHO05D007228 2.0e-82 310.1 231 62.8
unitig_749.g14296 Utricularia gibba HOM05D005679 ORTHO05D007228 8.0e-79 298.1 267 57.7
HPP92_006355 Vanilla planifolia HOM05D005679 ORTHO05D007228 6.8e-78 295.0 307 49.8
HanXRQChr10g0313981 Helianthus annuus HOM05D005679 ORTHO05D007228 3.4e-77 292.7 257 58.0
Prupe.7G112900 Prunus persica HOM05D005679 ORTHO05D007228 2.2e-76 290.0 221 61.1
TAR636G2700 Trochodendron aralioides HOM05D005679 ORTHO05D007228 7.8e-74 281.6 283 54.1
Ca_26654_v3 Cicer arietinum L. HOM05D005679 ORTHO05D007228 1.6e-71 273.9 237 58.2
Sed0004661 Sechium edule HOM05D005679 ORTHO05D007228 4.4e-69 265.8 240 57.9
HanXRQChr10g0314031 Helianthus annuus HOM05D005679 ORTHO05D007228 2.4e-67 260.0 211 61.6
Mapoly0066s0044 Marchantia polymorpha HOM05D005679 ORTHO05D007228 8.1e-63 245.0 318 42.8
Os05g0357700 Oryza sativa ssp. japonica HOM05D005679 ORTHO05D007228 2.4e-62 243.4 223 53.4
Zm00001eb285910 Zea mays HOM05D005679 ORTHO05D007228 3.1e-62 243.0 309 43.4
Lj9A526G37 Lonicera japonica HOM05D005679 ORTHO05D007228 8.9e-62 241.5 305 47.2
HanXRQChr10g0314011 Helianthus annuus HOM05D005679 ORTHO05D007228 1.5e-56 224.2 190 62.1
Pp3c4_17190 Physcomitrium patens HOM05D005679 ORTHO05D007228 7.3e-56 221.9 306 42.5
SMO203G0038 Selaginella moellendorffii HOM05D005679 ORTHO05D007228 7.3e-56 221.9 324 38.6
SMO327G0022 Selaginella moellendorffii HOM05D005679 ORTHO05D007228 6.9e-54 215.3 301 38.9
AUR62028550 Chenopodium quinoa HOM05D005679 ORTHO05D007228 1.2e-53 214.5 154 65.6
SEGI_36814 Sequoiadendron giganteum HOM05D005679 ORTHO05D007228 4.9e-52 209.1 223 48.9
CARHR130580 Cardamine hirsuta HOM05D005679 ORTHO05D007228 4.2e-51 206.1 194 56.7
AUR62033502 Chenopodium quinoa HOM05D005679 ORTHO05D007228 4.5e-45 186.0 188 50.5
Sed0012745 Sechium edule HOM05D005679 ORTHO05D007228 2.5e-40 170.2 212 42.9
Lj2A135T55 Lonicera japonica HOM05D005679 ORTHO05D007228 1.6e-39 167.5 162 54.3
SalBow3G2040 Salvia bowleyana HOM05D005679 ORTHO05D007228 6.2e-39 165.6 159 53.5
Dinv31674 Davidia involucrata HOM05D005679 ORTHO05D007228 1.8e-38 164.1 250 42.8
HanXRQChr10g0313891 Helianthus annuus HOM05D005679 ORTHO05D007228 4.0e-38 162.9 154 59.7
AagrBONN_evm.TU.Sc2ySwM_228.1072 Anthoceros agrestis HOM05D005679 ORTHO05D007228 9.0e-38 161.8 164 49.4
CBR_g961 Chara braunii HOM05D005679 ORTHO05D007228 2.7e-34 150.2 317 30.0
CDE02G3258 Ceratophyllum demersum HOM05D005679 ORTHO05D007228 1.5e-32 144.4 105 64.8
AUR62028549 Chenopodium quinoa HOM05D005679 ORTHO05D007228 8.2e-31 138.7 165 46.1
Lj2A135G55 Lonicera japonica HOM05D005679 ORTHO05D007228 2.0e-29 134.0 75 78.7
AUR62033501 Chenopodium quinoa HOM05D005679 ORTHO05D007228 7.6e-29 132.1 180 43.3
Lsat_1_v5_gn_1_48021 Lactuca sativa HOM05D005679 ORTHO05D007228 8.4e-28 128.6 87 67.8
Cre01.g042150 Chlamydomonas reinhardtii HOM05D005679 ORTHO05D007228 2.3e-25 120.6 371 28.0
DCAR_009157 Daucus carota HOM05D005679 ORTHO05D007228 5.7e-24 115.9 117 52.1
MCO10G317 Micromonas commoda HOM05D005679 ORTHO05D007228 4.1e-22 109.8 144 43.1
Actinidia14313 Actinidia chinensis HOM05D005679 ORTHO05D007228 3.8e-20 103.2 188 36.2
Gorai.006G155900 Gossypium raimondii HOM05D005679 ORTHO05D007228 8.5e-20 102.1 74 62.2
Gohir.D09G135950 Gossypium hirsutum HOM05D005679 ORTHO05D007228 2.5e-19 100.5 74 60.8
PRCOL_00001551 Prasinoderma coloniale HOM05D005679 ORTHO05D007228 8.2e-15 85.5 146 35.6
HanXRQChr10g0313971 Helianthus annuus HOM05D005679 ORTHO05D007228 5.0e-12 76.3 106 46.2
SEGI_00479 Sequoiadendron giganteum HOM05D005679 ORTHO05D007228 6.1e-10 69.3 70 42.9
arahy.Tifrunner.gnm1.ann1.7P1BGF Arachis hypogaea HOM05D005679 ORTHO05D003748 3.0e-09 67.0 37 81.1
HanXRQChr01g0029231 Helianthus annuus HOM05D005679 ORTHO05D007228 5.3e-06 56.2 87 43.7


User provided reference genes

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