Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen09g004330 Solanum pennellii HOM05D000477 ORTHO05D000338 1.9e-43 178.7 86 100.0
Solyc09g009570.3 Solanum lycopersicum HOM05D000477 ORTHO05D000338 1.0e-41 172.9 84 96.4
PGSC0003DMG400008886 Solanum tuberosum HOM05D000477 ORTHO05D000338 5.3e-38 160.6 84 91.7
PGSC0003DMG400008885 Solanum tuberosum HOM05D000477 ORTHO05D000338 1.5e-37 159.1 84 90.5
CAN.G397.25 Capsicum annuum HOM05D000477 ORTHO05D000338 3.5e-29 131.3 84 75.0
Nitab4.5_0006386g0010 Nicotiana tabacum HOM05D000477 ORTHO05D000338 6.3e-23 110.5 86 65.1
Nitab4.5_0001725g0040 Nicotiana tabacum HOM05D000477 ORTHO05D000338 4.1e-22 107.8 89 65.2
Sopen09g004340 Solanum pennellii HOM05D000477 ORTHO05D000338 1.2e-21 106.3 86 64.0
CAN.G397.26 Capsicum annuum HOM05D000477 ORTHO05D000338 2.7e-21 105.1 87 59.8
Solyc09g009580.4 Solanum lycopersicum HOM05D000477 ORTHO05D000338 3.5e-21 104.8 86 62.8
PGSC0003DMG402002698 Solanum tuberosum HOM05D000477 ORTHO05D000338 1.7e-20 102.4 86 61.6
Peaxi162Scf00040g02212 Petunia axillaris HOM05D000477 ORTHO05D000338 6.5e-20 100.5 86 60.5
Peaxi162Scf00763g00122 Petunia axillaris HOM05D000477 ORTHO05D000338 4.2e-19 97.8 86 64.0
CAN.G350.27 Capsicum annuum HOM05D000477 ORTHO05D000338 7.2e-19 97.1 84 59.5
CAN.G350.22 Capsicum annuum HOM05D000477 ORTHO05D000338 9.4e-19 96.7 87 58.6
Solyc09g005940.4 Solanum lycopersicum HOM05D000477 ORTHO05D000338 3.6e-18 94.7 85 55.3
Peaxi162Scf00040g00188 Petunia axillaris HOM05D000477 ORTHO05D000338 6.1e-18 94.0 86 53.5
Nitab4.5_0000692g0280 Nicotiana tabacum HOM05D000477 ORTHO05D000338 8.0e-18 93.6 86 60.5
Peaxi162Scf00306g00016 Petunia axillaris HOM05D000477 ORTHO05D000338 8.0e-18 93.6 86 58.1
Nitab4.5_0000663g0070 Nicotiana tabacum HOM05D000477 ORTHO05D000338 2.3e-17 92.0 88 58.0
CAN.G350.26 Capsicum annuum HOM05D000477 ORTHO05D000338 6.8e-17 90.5 84 59.5
Peaxi162Scf00040g00138 Petunia axillaris HOM05D000477 ORTHO05D000338 2.8e-15 85.1 86 53.5
Sopen09g001800 Solanum pennellii HOM05D000477 ORTHO05D000338 2.8e-15 85.1 69 58.0
Peaxi162Scf01388g00018 Petunia axillaris HOM05D000477 ORTHO05D000338 5.0e-12 74.3 86 53.5
CAN.G422.10 Capsicum annuum HOM05D000477 ORTHO05D000338 4.2e-11 71.2 63 57.1
Peaxi162Scf00763g00119 Petunia axillaris HOM05D000477 ORTHO05D000338 1.6e-10 69.3 86 51.2
Actinidia35879 Actinidia chinensis HOM05D000477 ORTHO05D000338 1.4e-09 66.2 83 42.2
MELO3C008988.2 Cucumis melo HOM05D000477 ORTHO05D000338 2.3e-09 65.5 82 39.0
BcaC09g48205 Brassica carinata HOM05D000477 ORTHO05D000338 8.9e-09 63.5 87 36.8
Dinv22689 Davidia involucrata HOM05D000477 ORTHO05D000338 8.9e-09 63.5 86 38.4
Actinidia35880 Actinidia chinensis HOM05D000477 ORTHO05D000338 1.2e-08 63.2 83 39.8
Sp3g10210 Schrenkiella parvula HOM05D000477 ORTHO05D000338 1.5e-08 62.8 88 38.6
THA.LOC104799278 Tarenaya hassleriana HOM05D000477 ORTHO05D000338 2.6e-08 62.0 87 36.8
Aa31sc238G40 Aethionema arabicum HOM05D000477 ORTHO05D000338 3.4e-08 61.6 91 36.3
CsaV3_4G031150 Cucumis sativus L. HOM05D000477 ORTHO05D000338 4.4e-08 61.2 82 37.8
Thhalv10020305m.g Eutrema salsugineum HOM05D000477 ORTHO05D000338 7.5e-08 60.5 89 37.1
C05p55920 Brassica napus HOM05D000477 ORTHO05D000338 9.8e-08 60.1 87 34.5
CAN.G350.21 Capsicum annuum HOM05D000477 ORTHO05D000338 9.8e-08 60.1 63 54.0
arahy.Tifrunner.gnm1.ann1.H1SHP3 Arachis hypogaea HOM05D000477 ORTHO05D000338 1.7e-07 59.3 85 37.6
arahy.Tifrunner.gnm1.ann1.W4FXC4 Arachis hypogaea HOM05D000477 ORTHO05D000338 1.7e-07 59.3 85 37.6
Nn7g35909 Nelumbo nucifera HOM05D000477 ORTHO05D000338 1.7e-07 59.3 83 38.6
Nn7g35912 Nelumbo nucifera HOM05D000477 ORTHO05D000338 1.7e-07 59.3 83 38.6
THA.LOC104826778 Tarenaya hassleriana HOM05D000477 ORTHO05D000338 1.7e-07 59.3 87 35.6
AT3G11980 Arabidopsis thaliana HOM05D000477 ORTHO05D000338 2.2e-07 58.9 87 33.3
PGR142G2706 Punica granatum HOM05D000477 ORTHO05D000338 2.2e-07 58.9 90 36.7
VMungo0720G0016 Vigna mungo HOM05D000477 ORTHO05D000338 2.2e-07 58.9 84 35.7
A05p37370 Brassica napus HOM05D000477 ORTHO05D000338 2.8e-07 58.5 88 36.4
BraA05t22536Z Brassica rapa HOM05D000477 ORTHO05D000338 2.8e-07 58.5 88 36.4
Sed0007176 Sechium edule HOM05D000477 ORTHO05D000338 2.8e-07 58.5 82 35.4
Carub.0003s1132 Capsella rubella HOM05D000477 ORTHO05D000338 3.7e-07 58.2 87 33.3
AL3G23590 Arabidopsis lyrata HOM05D000477 ORTHO05D000338 4.9e-07 57.8 87 33.3
ClCG04G001450 Citrullus lanatus HOM05D000477 ORTHO05D000338 4.9e-07 57.8 81 33.3
CARHR086540 Cardamine hirsuta HOM05D000477 ORTHO05D000338 6.3e-07 57.4 87 33.3
DCAR_017919 Daucus carota HOM05D000477 ORTHO05D000338 6.3e-07 57.4 88 38.6
Lalb_Chr25g0287631 Lupinus albus HOM05D000477 ORTHO05D000338 6.3e-07 57.4 85 36.5
PSO384G0109 Papaver somniferum HOM05D000477 ORTHO05D000338 6.3e-07 57.4 90 41.1
Potri.016G062200 Populus trichocarpa HOM05D000477 ORTHO05D000338 6.3e-07 57.4 86 33.7
Sabra16G0064100 Salix brachista HOM05D000477 ORTHO05D000338 6.3e-07 57.4 86 33.7
FAN02G2738 Fragaria x ananassa HOM05D004880 ORTHO05D006130 8.3e-07 57.0 86 36.0
ECA248G1974 Erigeron canadensis HOM05D000477 ORTHO05D000338 1.1e-06 56.6 88 38.6
PSO339G4121 Papaver somniferum HOM05D000477 ORTHO05D000338 1.1e-06 56.6 90 41.1
Oeu057592.1 Olea europaea HOM05D000477 ORTHO05D000338 1.4e-06 56.2 87 36.8
FAN05G5497 Fragaria x ananassa HOM05D004880 ORTHO05D006130 1.8e-06 55.8 86 34.9
Lsat_1_v5_gn_1_58840 Lactuca sativa HOM05D000477 ORTHO05D000338 1.8e-06 55.8 88 37.5
FAN09G2092 Fragaria x ananassa HOM05D004880 ORTHO05D006130 2.4e-06 55.5 86 34.9
Oeu063854.1 Olea europaea HOM05D000477 ORTHO05D000338 2.4e-06 55.5 87 35.6
PGR004G0981 Punica granatum HOM05D000477 ORTHO05D000338 2.4e-06 55.5 82 35.4
CANSAT64G0865 Cannabis sativa HOM05D000477 ORTHO05D000338 3.1e-06 55.1 86 33.7
HanXRQChr12g0356911 Helianthus annuus HOM05D000477 ORTHO05D000338 3.1e-06 55.1 87 33.3
Potri.006G196500 Populus trichocarpa HOM05D000477 ORTHO05D000338 3.1e-06 55.1 86 33.7
Prupe.7G084900 Prunus persica HOM05D000477 ORTHO05D000338 3.1e-06 55.1 87 36.8
QL05p062356 Quercus lobata HOM05D000477 ORTHO05D000338 3.1e-06 55.1 87 37.9
FvH4_6g21540 Fragaria vesca HOM05D000477 ORTHO05D000338 4.1e-06 54.7 86 33.7
FAN14G3637 Fragaria x ananassa HOM05D004880 ORTHO05D006130 4.1e-06 54.7 86 33.7
Psat6g092280 Pisum sativum HOM05D000477 ORTHO05D000338 4.1e-06 54.7 87 36.8
RcHm_v2.0_Chr3g0478781 Rosa chinensis HOM05D000477 ORTHO05D000338 5.4e-06 54.3 86 34.9
Ah.04g149980 Amaranthus hybridus HOM05D000477 ORTHO05D000338 7.0e-06 53.9 82 34.1
CiPaw.01G097100 Carya illinoinensis HOM05D000477 ORTHO05D000338 7.0e-06 53.9 44 59.1
Ca_25939_v3 Cicer arietinum L. HOM05D000477 ORTHO05D000338 7.0e-06 53.9 88 36.4
Ca_30140_v3 Cicer arietinum L. HOM05D000477 ORTHO05D000338 7.0e-06 53.9 88 36.4
GSVIVG01033433001 Vitis vinifera HOM05D000477 ORTHO05D000338 7.0e-06 53.9 82 34.1
Ciclev10011332m.g Citrus clementina HOM05D000477 ORTHO05D000338 9.2e-06 53.5 87 36.8
THA.LOC104817143 Tarenaya hassleriana HOM05D000477 ORTHO05D000338 9.2e-06 53.5 82 35.4


User provided reference genes

Program Settings