Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen09g003840 Solanum pennellii HOM05D003745 ORTHO05D004215 1.9e-37 158.7 79 100.0
PGSC0003DMG400002682 Solanum tuberosum HOM05D003745 ORTHO05D004215 3.3e-34 147.9 84 90.5
Peaxi162Scf00433g00025 Petunia axillaris HOM05D003745 ORTHO05D004215 9.0e-24 113.2 81 76.5
Nitab4.5_0000663g0130 Nicotiana tabacum HOM05D003745 ORTHO05D004215 5.8e-23 110.5 80 76.2
Nitab4.5_0006360g0020 Nicotiana tabacum HOM05D003745 ORTHO05D004215 2.1e-20 102.1 81 72.8
PGSC0003DMG400028173 Solanum tuberosum HOM05D003745 ORTHO05D004215 2.8e-17 91.7 81 60.5
Solyc10g083580.2 Solanum lycopersicum HOM05D003745 ORTHO05D004215 9.0e-16 86.7 81 55.6
Sopen10g033060 Solanum pennellii HOM05D003745 ORTHO05D004215 1.5e-15 85.9 81 55.6
Duzib106G0076 Durio zibethinus HOM05D003745 ORTHO05D004215 4.9e-14 80.9 72 59.7
Actinidia11335 Actinidia chinensis HOM05D003745 ORTHO05D004215 6.4e-14 80.5 78 61.5
Thecc.05G081300 Theobroma cacao HOM05D003745 ORTHO05D004215 6.4e-14 80.5 74 58.1
Peaxi162Scf00110g02023 Petunia axillaris HOM05D003745 ORTHO05D004215 8.4e-14 80.1 80 56.2
CiPaw.09G008800 Carya illinoinensis HOM05D003745 ORTHO05D004215 1.9e-13 79.0 80 57.5
Duzib093G0672 Durio zibethinus HOM05D003745 ORTHO05D004215 2.4e-13 78.6 74 56.8
Dinv19830 Davidia involucrata HOM05D003745 ORTHO05D004215 5.4e-13 77.4 79 58.2
Duzib128G0603 Durio zibethinus HOM05D003745 ORTHO05D004215 1.6e-12 75.9 75 58.7
Nitab4.5_0000132g0150 Nicotiana tabacum HOM05D003745 ORTHO05D004215 2.1e-12 75.5 60 60.0
Gohir.D01G198200 Gossypium hirsutum HOM05D003745 ORTHO05D004215 2.7e-12 75.1 77 55.8
Cc06_g05290 Coffea canephora HOM05D003745 ORTHO05D004215 3.5e-12 74.7 78 55.1
Duzib106G0171 Durio zibethinus HOM05D003745 ORTHO05D004215 3.5e-12 74.7 75 56.0
vmacro07360 Vaccinium macrocarpon HOM05D003745 ORTHO05D004215 4.6e-12 74.3 84 57.1
SalBow3G0913 Salvia bowleyana HOM05D003745 ORTHO05D004215 6.0e-12 73.9 75 50.7
Psat7g007360 Pisum sativum HOM05D003745 ORTHO05D004215 1.0e-11 73.2 75 53.3
Gohir.A04G066114 Gossypium hirsutum HOM05D003745 ORTHO05D004215 1.8e-11 72.4 78 52.6
Nn2g14004 Nelumbo nucifera HOM05D003745 ORTHO05D004215 1.8e-11 72.4 79 51.9
Gorai.002G242400 Gossypium raimondii HOM05D003745 ORTHO05D004215 2.3e-11 72.0 77 53.2
Rhsim03G0081200 Rhododendron simsii HOM05D003745 ORTHO05D004215 3.9e-11 71.2 82 57.3
Gohir.A01G209100 Gossypium hirsutum HOM05D003745 ORTHO05D004215 6.7e-11 70.5 77 53.2
TPR.G5649 Trifolium pratense HOM05D003745 ORTHO05D004215 1.1e-10 69.7 75 50.7
TWI77G0164 Tripterygium wilfordii HOM05D003745 ORTHO05D004215 1.9e-10 68.9 74 54.1
Dinv21253 Davidia involucrata HOM05D003745 ORTHO05D004215 2.5e-10 68.6 81 51.9
Gohir.A01G209200 Gossypium hirsutum HOM05D003745 ORTHO05D004215 2.5e-10 68.6 75 50.7
Glyma.10G066400 Glycine max HOM05D003745 ORTHO05D004215 4.3e-10 67.8 79 51.9
Atru.chr8.1631 Acer truncatum HOM05D003745 ORTHO05D004215 5.6e-10 67.4 80 50.0
QL07p040518 Quercus lobata HOM05D003745 ORTHO05D004215 5.6e-10 67.4 76 52.6
GSVIVG01033785001 Vitis vinifera HOM05D003745 ORTHO05D004215 5.6e-10 67.4 75 50.7
TAR636G1780 Trochodendron aralioides HOM05D003745 ORTHO05D004215 9.6e-10 66.6 51 58.8
CiPaw.10G005500 Carya illinoinensis HOM05D003745 ORTHO05D004215 1.3e-09 66.2 81 50.6
DCAR_006146 Daucus carota HOM05D003745 ORTHO05D004215 1.3e-09 66.2 74 48.6
Phvul.007G223101 Phaseolus vulgaris HOM05D003745 ORTHO05D004215 1.3e-09 66.2 82 51.2
Gohir.D01G198300 Gossypium hirsutum HOM05D003745 ORTHO05D004215 2.1e-09 65.5 77 49.4
Oeu040536.1 Olea europaea HOM05D003745 ORTHO05D004215 2.1e-09 65.5 79 49.4
FvH4_6g17920 Fragaria vesca HOM05D003745 ORTHO05D004215 2.8e-09 65.1 38 73.7
FAN05G2107 Fragaria x ananassa HOM05D003745 ORTHO05D004215 2.8e-09 65.1 38 73.7
FAN05G2814 Fragaria x ananassa HOM05D003745 ORTHO05D004215 2.8e-09 65.1 38 73.7
FAN14G5394 Fragaria x ananassa HOM05D003745 ORTHO05D004215 2.8e-09 65.1 38 73.7
MD14G1016200 Malus domestica HOM05D003745 ORTHO05D004215 2.8e-09 65.1 76 50.0
Cpa.g.sc5.75 Carica papaya HOM05D003745 ORTHO05D004215 3.7e-09 64.7 74 52.7
Manes.08G021100 Manihot esculenta HOM05D003745 ORTHO05D004215 3.7e-09 64.7 68 52.9
Peaxi162Scf00789g00618 Petunia axillaris HOM05D003745 ORTHO05D004215 3.7e-09 64.7 40 67.5
FAN09G1254 Fragaria x ananassa HOM05D003745 ORTHO05D004215 4.8e-09 64.3 74 44.6
Medtr1g061120 Medicago truncatula HOM05D003745 ORTHO05D004215 4.8e-09 64.3 80 47.5
Aqoxy2G01397 Aquilegia oxysepala HOM05D003745 ORTHO05D004215 6.2e-09 63.9 73 49.3
Cfa010081 Carpinus fangiana HOM05D003745 ORTHO05D004215 6.2e-09 63.9 76 47.4
MD12G1018200 Malus domestica HOM05D003745 ORTHO05D004215 6.2e-09 63.9 76 50.0
arahy.Tifrunner.gnm1.ann1.AP4865 Arachis hypogaea HOM05D003745 ORTHO05D004215 8.1e-09 63.5 85 45.9
arahy.Tifrunner.gnm1.ann1.NCX3KP Arachis hypogaea HOM05D003745 ORTHO05D004215 8.1e-09 63.5 85 45.9
Dinv29425 Davidia involucrata HOM05D003745 ORTHO05D004215 8.1e-09 63.5 77 46.8
RcHm_v2.0_Chr3g0472171 Rosa chinensis HOM05D003745 ORTHO05D004215 8.1e-09 63.5 34 82.4
Actinidia24179 Actinidia chinensis HOM05D003745 ORTHO05D004215 1.1e-08 63.2 74 45.9
TAR369G1123 Trochodendron aralioides HOM05D003745 ORTHO05D004215 1.1e-08 63.2 69 50.7
Glyma.13G151500 Glycine max HOM05D003745 ORTHO05D004215 1.4e-08 62.8 81 46.9
Manes.09G058940 Manihot esculenta HOM05D003745 ORTHO05D004215 1.4e-08 62.8 79 46.8
AL5G22960 Arabidopsis lyrata HOM05D003745 ORTHO05D004215 1.8e-08 62.4 78 47.4
EL10Ac9g21084 Beta vulgaris HOM05D003745 ORTHO05D004215 1.8e-08 62.4 78 47.4
CSS0050359 Camellia sinensis var. sinensis HOM05D003745 ORTHO05D004215 1.8e-08 62.4 79 40.5
CANSAT80G1673 Cannabis sativa HOM05D003745 ORTHO05D004215 1.8e-08 62.4 85 42.4
RcHm_v2.0_Chr5g0055241 Rosa chinensis HOM05D003745 ORTHO05D004215 1.8e-08 62.4 77 45.5
AT3G44735 Arabidopsis thaliana HOM05D003745 ORTHO05D004215 2.4e-08 62.0 79 49.4
Ciclev10013197m.g Citrus clementina HOM05D003745 ORTHO05D004215 2.4e-08 62.0 77 48.1
Nn6g35042 Nelumbo nucifera HOM05D003745 ORTHO05D004215 2.4e-08 62.0 53 50.9
MSTRG.21061 Avicennia marina HOM05D003745 ORTHO05D004215 3.1e-08 61.6 75 41.3
Prupe.7G116900 Prunus persica HOM05D003745 ORTHO05D004215 3.1e-08 61.6 74 48.6
GSVIVG01031398001 Vitis vinifera HOM05D003745 ORTHO05D004215 3.1e-08 61.6 83 44.6
Carub.0005s1042 Capsella rubella HOM05D003745 ORTHO05D004215 4.0e-08 61.2 79 44.3
Carub.0015s0003 Capsella rubella HOM05D003745 ORTHO05D004215 4.0e-08 61.2 79 44.3
AL6G13230 Arabidopsis lyrata HOM05D003745 ORTHO05D004215 5.3e-08 60.8 81 44.4
CiPaw.14G103500 Carya illinoinensis HOM05D003745 ORTHO05D004215 5.3e-08 60.8 79 44.3
FAN02G0871 Fragaria x ananassa HOM05D003745 ORTHO05D004215 5.3e-08 60.8 33 78.8
SalBow6G4256 Salvia bowleyana HOM05D003745 ORTHO05D004215 5.3e-08 60.8 74 47.3
TWI75G0377 Tripterygium wilfordii HOM05D003745 ORTHO05D004215 5.3e-08 60.8 78 46.2
Atru.chr3.3378 Acer truncatum HOM05D003745 ORTHO05D004215 6.9e-08 60.5 51 58.8
Actinidia07207 Actinidia chinensis HOM05D003745 ORTHO05D004215 6.9e-08 60.5 74 43.2
Gorai.002G242500 Gossypium raimondii HOM05D003745 ORTHO05D004215 6.9e-08 60.5 78 47.4
Ciclev10003706m.g Citrus clementina HOM05D003745 ORTHO05D004215 9.0e-08 60.1 79 46.8
Gorai.001G119600 Gossypium raimondii HOM05D003745 ORTHO05D004215 9.0e-08 60.1 74 43.2
Thhalv10015130m.g Eutrema salsugineum HOM05D003745 ORTHO05D004215 1.2e-07 59.7 45 60.0
Lalb_Chr02g0155181 Lupinus albus HOM05D003745 ORTHO05D004215 1.2e-07 59.7 82 41.5
MD11G1157500 Malus domestica HOM05D003745 ORTHO05D004215 1.2e-07 59.7 74 44.6
Sabra04G0127200 Salix brachista HOM05D003745 ORTHO05D004215 1.2e-07 59.7 35 71.4
Hund00782 Selenicereus undatus HOM05D003745 ORTHO05D004215 1.2e-07 59.7 84 41.7
THA.LOC104799535 Tarenaya hassleriana HOM05D003745 ORTHO05D004215 1.2e-07 59.7 41 65.9
C01p34270 Brassica napus HOM05D003745 ORTHO05D004215 1.5e-07 59.3 77 46.8
BolC1t03395H Brassica oleracea HOM05D003745 ORTHO05D004215 1.5e-07 59.3 77 46.8
CiPaw.13G141100 Carya illinoinensis HOM05D003745 ORTHO05D004215 1.5e-07 59.3 79 46.8
Cc01_g09790 Coffea canephora HOM05D003745 ORTHO05D004215 1.5e-07 59.3 81 43.2
Lj5g0022060 Lotus japonicus HOM05D003745 ORTHO05D004215 1.5e-07 59.3 79 46.8
MD03G1134700 Malus domestica HOM05D003745 ORTHO05D004215 1.5e-07 59.3 77 44.2
A10p32390 Brassica napus HOM05D003745 ORTHO05D004215 2.0e-07 58.9 86 41.9
BraA10t45279Z Brassica rapa HOM05D003745 ORTHO05D004215 2.0e-07 58.9 86 41.9
CARHR151430 Cardamine hirsuta HOM05D003745 ORTHO05D004215 2.0e-07 58.9 78 47.4
Ciclev10029683m.g Citrus clementina HOM05D003745 ORTHO05D004215 2.0e-07 58.9 81 49.4
Lsat_1_v5_gn_6_41120 Lactuca sativa HOM05D003745 ORTHO05D004215 2.0e-07 58.9 35 68.6
PGR004G1125 Punica granatum HOM05D003745 ORTHO05D004215 2.0e-07 58.9 85 42.4
vmacro03277 Vaccinium macrocarpon HOM05D003745 ORTHO05D004215 2.6e-07 58.5 81 44.4
vmacro23109 Vaccinium macrocarpon HOM05D003745 ORTHO05D004215 2.6e-07 58.5 81 44.4
CSS0049961 Camellia sinensis var. sinensis HOM05D003745 ORTHO05D004215 3.4e-07 58.2 79 40.5
CANSAT54G1542 Cannabis sativa HOM05D003745 ORTHO05D004215 3.4e-07 58.2 41 68.3
Manes.11G157100 Manihot esculenta HOM05D003745 ORTHO05D004215 3.4e-07 58.2 74 44.6
PSO063G0377 Papaver somniferum HOM05D003745 ORTHO05D004215 3.4e-07 58.2 84 46.4
FAN11G3796 Fragaria x ananassa HOM05D003745 ORTHO05D004215 4.5e-07 57.8 78 44.9
PSO384G0932 Papaver somniferum HOM05D003745 ORTHO05D004215 4.5e-07 57.8 84 41.7
Potri.009G148900 Populus trichocarpa HOM05D003745 ORTHO05D004215 4.5e-07 57.8 79 44.3
Sp6g39010 Schrenkiella parvula HOM05D003745 ORTHO05D004215 4.5e-07 57.8 80 42.5
TAR633G1338 Trochodendron aralioides HOM05D003745 ORTHO05D004215 4.5e-07 57.8 51 52.9
CAN.G919.7 Capsicum annuum HOM05D003745 ORTHO05D004215 5.8e-07 57.4 84 40.5
Haze_23447 Corylus avellana HOM05D003745 ORTHO05D004215 5.8e-07 57.4 37 62.2
Gohir.D07G111300 Gossypium hirsutum HOM05D003745 ORTHO05D004215 5.8e-07 57.4 74 41.9
Sopen06g031010 Solanum pennellii HOM05D003745 ORTHO05D004215 5.8e-07 57.4 40 60.0
TWI74G0799 Tripterygium wilfordii HOM05D003745 ORTHO05D004215 5.8e-07 57.4 75 49.3
CSS0006810 Camellia sinensis var. sinensis HOM05D003745 ORTHO05D004215 7.6e-07 57.0 80 38.8
ECA233G0462 Erigeron canadensis HOM05D003745 ORTHO05D004215 7.6e-07 57.0 84 46.4
FAN21G0140 Fragaria x ananassa HOM05D003745 ORTHO05D004215 7.6e-07 57.0 78 44.9
Gohir.A07G107300 Gossypium hirsutum HOM05D003745 ORTHO05D004215 7.6e-07 57.0 74 43.2
PSO339G5919 Papaver somniferum HOM05D003745 ORTHO05D004215 7.6e-07 57.0 87 43.7
Potri.004G188200 Populus trichocarpa HOM05D003745 ORTHO05D004215 7.6e-07 57.0 79 44.3
Solyc06g074540.4 Solanum lycopersicum HOM05D003745 ORTHO05D004215 7.6e-07 57.0 39 61.5
PGSC0003DMG400007123 Solanum tuberosum HOM05D003745 ORTHO05D004215 7.6e-07 57.0 39 61.5
Carub.0006s0262 Capsella rubella HOM05D003745 ORTHO05D004215 9.9e-07 56.6 42 66.7
PSO339G1716 Papaver somniferum HOM05D003745 ORTHO05D004215 9.9e-07 56.6 54 57.4
Peaxi162Scf00157g00066 Petunia axillaris HOM05D003745 ORTHO05D004215 9.9e-07 56.6 40 57.5
Thecc.09G291500 Theobroma cacao HOM05D003745 ORTHO05D004215 9.9e-07 56.6 73 42.5
C09p73210 Brassica napus HOM05D003745 ORTHO05D004215 1.3e-06 56.2 84 40.5
BolC9t60056H Brassica oleracea HOM05D003745 ORTHO05D004215 1.3e-06 56.2 84 40.5
FAN16G1639 Fragaria x ananassa HOM05D003745 ORTHO05D004215 1.3e-06 56.2 78 43.6
Sc12g0004160 Simmondsia chinensis HOM05D003745 ORTHO05D004215 1.3e-06 56.2 74 44.6
Eucgr.A01541 Eucalyptus grandis HOM05D003745 ORTHO05D004215 1.7e-06 55.8 87 47.1
FvH4_3g29900 Fragaria vesca HOM05D003745 ORTHO05D004215 1.7e-06 55.8 78 43.6
MSTRG.17729 Avicennia marina HOM05D003745 ORTHO05D004215 2.2e-06 55.5 38 65.8
arahy.Tifrunner.gnm1.ann1.X8LT49 Arachis hypogaea HOM05D003745 ORTHO05D004215 2.9e-06 55.1 70 40.0
HanXRQChr13g0396991 Helianthus annuus HOM05D003745 ORTHO05D004215 2.9e-06 55.1 74 47.3
Actinidia37099 Actinidia chinensis HOM05D003745 ORTHO05D004215 3.8e-06 54.7 81 40.7
Actinidia39884 Actinidia chinensis HOM05D000123 ORTHO05D000064 3.8e-06 54.7 64 51.6
COL.COLO4_19298 Corchorus olitorius HOM05D003745 ORTHO05D004215 3.8e-06 54.7 77 45.5
Rhsim01G0208400 Rhododendron simsii HOM05D003745 ORTHO05D004215 3.8e-06 54.7 40 60.0
Sp5g16440 Schrenkiella parvula HOM05D003745 ORTHO05D004215 3.8e-06 54.7 77 40.3
TWI79G1201 Tripterygium wilfordii HOM05D003745 ORTHO05D004215 3.8e-06 54.7 78 42.3
Duzib168G0884 Durio zibethinus HOM05D003745 ORTHO05D004215 4.9e-06 54.3 74 39.2
Duzib150G0771 Durio zibethinus HOM05D003745 ORTHO05D004215 6.4e-06 53.9 73 41.1
QL01p013692 Quercus lobata HOM05D003745 ORTHO05D004215 6.4e-06 53.9 78 41.0
Rhsim13G0105100 Rhododendron simsii HOM05D003745 ORTHO05D004215 6.4e-06 53.9 81 44.4
Sabra09G0117500 Salix brachista HOM05D003745 ORTHO05D004215 6.4e-06 53.9 58 46.6
Actinidia35448 Actinidia chinensis HOM05D003745 ORTHO05D004215 8.4e-06 53.5 82 39.0
arahy.Tifrunner.gnm1.ann1.T88YYN Arachis hypogaea HOM05D003745 ORTHO05D004215 8.4e-06 53.5 70 40.0
Thhalv10002908m.g Eutrema salsugineum HOM05D003745 ORTHO05D004215 8.4e-06 53.5 37 70.3


User provided reference genes

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