Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen09g003730 Solanum pennellii HOM05D006043 ORTHO05D007309 2.8e-70 268.5 134 100.0
Solyc09g008970.1 Solanum lycopersicum HOM05D006043 ORTHO05D007309 6.7e-64 247.3 137 92.0
PGSC0003DMG400002724 Solanum tuberosum HOM05D006043 ORTHO05D007309 4.4e-55 218.0 146 79.5
Peaxi162Scf00412g00073 Petunia axillaris HOM05D006043 ORTHO05D007309 1.3e-46 189.9 149 67.8
CAN.G824.34 Capsicum annuum HOM05D006043 ORTHO05D007309 1.5e-42 176.4 145 64.1
Oeu030483.1 Olea europaea HOM05D006043 ORTHO05D007309 9.2e-37 157.1 149 58.4
Cc06_g05110 Coffea canephora HOM05D006043 ORTHO05D007309 2.3e-35 152.5 158 55.1
SGA_v2.0_scaffold40G15419 Striga asiatica HOM05D006043 ORTHO05D007309 8.6e-35 150.6 152 57.9
Nitab4.5_0010125g0040 Nicotiana tabacum HOM05D006043 ORTHO05D007309 2.0e-31 139.4 153 53.6
SalBow3G1044 Salvia bowleyana HOM05D006043 ORTHO05D007309 5.8e-31 137.9 139 55.4
Rhsim06G0171100 Rhododendron simsii HOM05D006043 ORTHO05D007309 1.3e-30 136.7 156 54.5
Manes.08G019800 Manihot esculenta HOM05D006043 ORTHO05D007309 1.9e-29 132.9 147 53.1
HanXRQChr09g0259401 Helianthus annuus HOM05D006043 ORTHO05D007309 7.0e-29 131.0 142 50.0
vmacro12136 Vaccinium macrocarpon HOM05D006043 ORTHO05D007309 4.6e-28 128.3 156 53.8
C05p58050 Brassica napus HOM05D002004 ORTHO05D002089 1.0e-27 127.1 145 52.4
BolC5t34462H Brassica oleracea HOM05D006043 ORTHO05D007309 1.0e-27 127.1 145 52.4
A05p39030 Brassica napus HOM05D006043 ORTHO05D007309 1.3e-27 126.7 146 50.7
BraA05t22694Z Brassica rapa HOM05D006043 ORTHO05D007309 1.3e-27 126.7 145 51.0
Nitab4.5_0001922g0090 Nicotiana tabacum HOM05D006043 ORTHO05D007309 2.3e-27 125.9 150 51.3
BcaC05g29726 Brassica carinata HOM05D006043 ORTHO05D007309 3.0e-27 125.6 149 49.7
Atru.chr8.1654 Acer truncatum HOM05D006043 ORTHO05D007309 3.9e-27 125.2 158 50.0
CSS0040940 Camellia sinensis var. sinensis HOM05D006043 ORTHO05D007309 3.9e-27 125.2 149 51.7
Carub.0003s0912 Capsella rubella HOM05D006043 ORTHO05D007309 8.6e-27 124.0 144 48.6
Ciclev10013017m.g Citrus clementina HOM05D006043 ORTHO05D007309 1.1e-26 123.6 154 50.6
AL3G21330 Arabidopsis lyrata HOM05D006043 ORTHO05D007309 2.5e-26 122.5 143 48.3
AT3G10020 Arabidopsis thaliana HOM05D006043 ORTHO05D007309 7.3e-26 120.9 143 49.0
Ca_08959_v3 Cicer arietinum L. HOM05D006043 ORTHO05D007309 7.3e-26 120.9 146 50.7
Lalb_Chr20g0112261 Lupinus albus HOM05D006043 ORTHO05D007309 1.6e-25 119.8 144 50.0
CANSAT80G1206 Cannabis sativa HOM05D006043 ORTHO05D007309 2.1e-25 119.4 158 47.5
CARHR084520 Cardamine hirsuta HOM05D006043 ORTHO05D007309 2.1e-25 119.4 143 46.9
VMungo1383G3657 Vigna mungo HOM05D006043 ORTHO05D007309 2.8e-25 119.0 150 48.0
QL07p040748 Quercus lobata HOM05D006043 ORTHO05D007309 3.6e-25 118.6 155 46.5
Sc07g0005350 Simmondsia chinensis HOM05D006043 ORTHO05D007309 3.6e-25 118.6 151 51.0
Glyma.03G190100 Glycine max HOM05D006043 ORTHO05D007309 4.7e-25 118.2 148 48.0
Sp3g08330 Schrenkiella parvula HOM05D006043 ORTHO05D007309 4.7e-25 118.2 146 49.3
BraA03t12747Z Brassica rapa HOM05D006043 ORTHO05D007309 1.1e-24 117.1 149 50.3
MELO3C009427.2 Cucumis melo HOM05D006043 ORTHO05D007309 1.4e-24 116.7 151 47.0
Cpa.g.sc5.89 Carica papaya HOM05D006043 ORTHO05D007309 1.8e-24 116.3 150 46.7
CsaV3_3G036730 Cucumis sativus L. HOM05D006043 ORTHO05D007309 1.8e-24 116.3 149 47.0
DCAR_009167 Daucus carota HOM05D006043 ORTHO05D007309 2.3e-24 115.9 134 50.0
Thhalv10021699m.g Eutrema salsugineum HOM05D006043 ORTHO05D007309 2.3e-24 115.9 145 48.3
Aa31LG3G2550 Aethionema arabicum HOM05D006043 ORTHO05D007309 3.1e-24 115.5 142 49.3
Cc00_g32800 Coffea canephora HOM05D006043 ORTHO05D007309 3.1e-24 115.5 131 50.4
MD14G1014200 Malus domestica HOM05D006043 ORTHO05D007309 5.2e-24 114.8 150 52.0
RcHm_v2.0_Chr3g0471911 Rosa chinensis HOM05D006043 ORTHO05D007309 5.2e-24 114.8 154 48.1
Glyma.19G190400 Glycine max HOM05D006043 ORTHO05D007309 8.9e-24 114.0 150 45.3
Phvul.001G185700 Phaseolus vulgaris HOM05D006043 ORTHO05D007309 8.9e-24 114.0 150 47.3
ClCG10G019450 Citrullus lanatus HOM05D006043 ORTHO05D007309 1.2e-23 113.6 151 45.7
Duzib106G1072 Durio zibethinus HOM05D006043 ORTHO05D007309 1.2e-23 113.6 159 46.5
BcaB03g11578 Brassica carinata HOM05D006043 ORTHO05D007309 2.0e-23 112.8 148 49.3
Eucgr.K02399 Eucalyptus grandis HOM05D006043 ORTHO05D007309 2.0e-23 112.8 134 50.0
FAN02G0054 Fragaria x ananassa HOM05D006043 ORTHO05D007309 2.6e-23 112.5 154 49.4
Eucgr.K02384 Eucalyptus grandis HOM05D006043 ORTHO05D007309 3.4e-23 112.1 134 50.0
Eucgr.K02410 Eucalyptus grandis HOM05D006043 ORTHO05D007309 3.4e-23 112.1 134 50.0
FvH4_6g17700 Fragaria vesca HOM05D006043 ORTHO05D007309 3.4e-23 112.1 154 49.4
C03p43400 Brassica napus HOM05D006043 ORTHO05D007309 4.4e-23 111.7 149 49.0
Cc00_g05260 Coffea canephora HOM05D006043 ORTHO05D007309 4.4e-23 111.7 150 48.0
Prupe.7G119300 Prunus persica HOM05D006043 ORTHO05D007309 5.8e-23 111.3 151 50.3
BcaC01g04256 Brassica carinata HOM05D006043 ORTHO05D007309 7.5e-23 110.9 149 49.0
COL.COLO4_29832 Corchorus olitorius HOM05D006043 ORTHO05D007309 7.5e-23 110.9 156 44.2
Duzib093G0521 Durio zibethinus HOM05D006043 ORTHO05D007309 7.5e-23 110.9 160 44.4
Gohir.A04G066428 Gossypium hirsutum HOM05D006043 ORTHO05D007309 7.5e-23 110.9 153 45.8
Lsat_1_v5_gn_2_22321 Lactuca sativa HOM05D006043 ORTHO05D007309 7.5e-23 110.9 131 47.3
TPR.G7024 Trifolium pratense HOM05D006043 ORTHO05D007309 7.5e-23 110.9 148 45.9
MD12G1016000 Malus domestica HOM05D006043 ORTHO05D007309 1.3e-22 110.2 150 48.7
CiPaw.10G004600 Carya illinoinensis HOM05D006043 ORTHO05D007309 1.7e-22 109.8 155 47.1
Gohir.D09G138000 Gossypium hirsutum HOM05D006043 ORTHO05D007309 1.7e-22 109.8 152 44.1
Eucgr.K02389 Eucalyptus grandis HOM05D006043 ORTHO05D007309 2.2e-22 109.4 134 48.5
Gorai.006G158600 Gossypium raimondii HOM05D006043 ORTHO05D007309 2.9e-22 109.0 137 46.0
Cfa016525 Carpinus fangiana HOM05D006043 ORTHO05D007309 3.7e-22 108.6 135 48.9
Gohir.D04G105000 Gossypium hirsutum HOM05D006043 ORTHO05D007309 3.7e-22 108.6 149 45.0
Gorai.009G408700 Gossypium raimondii HOM05D006043 ORTHO05D007309 3.7e-22 108.6 149 45.0
A03p35730 Brassica napus HOM05D006043 ORTHO05D007309 4.9e-22 108.2 145 49.0
Potri.013G014300 Populus trichocarpa HOM05D006043 ORTHO05D007309 8.3e-22 107.5 152 49.3
Lj1g0027910 Lotus japonicus HOM05D006043 ORTHO05D007309 1.4e-21 106.7 151 44.4
Haze_19524 Corylus avellana HOM05D006043 ORTHO05D007309 1.9e-21 106.3 154 44.8
BolC3t16611H Brassica oleracea HOM05D006043 ORTHO05D007309 3.2e-21 105.5 150 47.3
BolC8t51238H Brassica oleracea HOM05D006043 ORTHO05D007309 3.2e-21 105.5 127 51.2
Medtr7g103520 Medicago truncatula HOM05D006043 ORTHO05D007309 3.2e-21 105.5 146 45.2
Aqoxy2G01470 Aquilegia oxysepala HOM05D006043 ORTHO05D007309 9.2e-21 104.0 117 51.3
MBI01_g32535_MAGBIO Magnolia biondii HOM05D006043 ORTHO05D007309 1.6e-20 103.2 138 48.6
Dinv21268 Davidia involucrata HOM05D006043 ORTHO05D007309 4.6e-20 101.7 140 47.1
Gohir.A09G136312 Gossypium hirsutum HOM05D006043 ORTHO05D007309 4.6e-20 101.7 161 39.8
Oeu040545.1 Olea europaea HOM05D006043 ORTHO05D007309 6.0e-20 101.3 152 43.4
PGSC0003DMG400002723 Solanum tuberosum HOM05D006043 ORTHO05D007309 1.7e-19 99.8 117 45.3
Lj4P368T6 Lonicera japonica HOM05D006043 ORTHO05D007309 2.3e-19 99.4 84 59.5
Thecc.05G079900 Theobroma cacao HOM05D006043 ORTHO05D007309 3.0e-19 99.0 157 38.9
Lj2P127T74 Lonicera japonica HOM05D006043 ORTHO05D007309 6.6e-19 97.8 134 46.3
Aqoxy1G00961 Aquilegia oxysepala HOM05D006043 ORTHO05D007309 1.9e-18 96.3 155 38.7
Psat3g036320 Pisum sativum HOM05D006043 ORTHO05D007309 2.5e-18 95.9 116 50.0
Eucgr.A01560 Eucalyptus grandis HOM05D006043 ORTHO05D007309 3.3e-18 95.5 130 46.2
PSO384G2483 Papaver somniferum HOM05D006043 ORTHO05D007309 4.3e-18 95.1 154 39.6
Ah.08g211020 Amaranthus hybridus HOM05D006043 ORTHO05D007309 5.6e-18 94.7 150 44.0
Sopen09g003740 Solanum pennellii HOM05D006043 ORTHO05D007309 7.3e-18 94.4 148 41.9
PGR004G1627 Punica granatum HOM05D006043 ORTHO05D007309 1.2e-17 93.6 136 44.1
Peaxi162Scf00412g00063 Petunia axillaris HOM05D006043 ORTHO05D007309 2.1e-17 92.8 154 38.3
TWI53G1797 Tripterygium wilfordii HOM05D006043 ORTHO05D007309 2.8e-17 92.4 108 50.9
EL10Ac7g17005 Beta vulgaris HOM05D006043 ORTHO05D007309 6.2e-17 91.3 154 43.5
Solyc09g008980.2 Solanum lycopersicum HOM05D006043 ORTHO05D007309 1.1e-16 90.5 147 40.1
Nitab4.5_0010125g0030 Nicotiana tabacum HOM05D006043 ORTHO05D007309 1.4e-16 90.1 154 39.6
Sed0027852 Sechium edule HOM05D006043 ORTHO05D007309 1.4e-16 90.1 138 44.2
THA.LOC104816380 Tarenaya hassleriana HOM05D006043 ORTHO05D007309 1.4e-16 90.1 121 47.1
Nn6g35076 Nelumbo nucifera HOM05D006043 ORTHO05D007309 4.0e-16 88.6 132 45.5
ECA126G0006 Erigeron canadensis HOM05D006043 ORTHO05D007309 3.4e-15 85.5 128 38.3
Nn2g13971 Nelumbo nucifera HOM05D006043 ORTHO05D007309 9.9e-15 84.0 100 49.0
Zm00001eb406490 Zea mays HOM05D006043 ORTHO05D007309 2.2e-14 82.8 138 40.6
C02p39530 Brassica napus HOM05D006043 ORTHO05D007309 6.4e-14 81.3 98 52.0
BolC2t09966H Brassica oleracea HOM05D006043 ORTHO05D007309 6.4e-14 81.3 98 52.0
C08p36560 Brassica napus HOM05D006043 ORTHO05D007309 8.4e-14 80.9 98 52.0
BcaC03g16179 Brassica carinata HOM05D006043 ORTHO05D007309 1.1e-13 80.5 98 52.0
Os12g0147200 Oryza sativa ssp. japonica HOM05D006043 ORTHO05D007309 3.5e-12 75.5 123 39.0
HPP92_021571 Vanilla planifolia HOM05D006043 ORTHO05D007309 4.6e-12 75.1 130 40.8
Os11g0149200 Oryza sativa ssp. japonica HOM05D006043 ORTHO05D007309 3.0e-11 72.4 119 41.2
AUR62033593 Chenopodium quinoa HOM05D006043 ORTHO05D007309 8.6e-11 70.9 113 42.5
TWI13G0012 Tripterygium wilfordii HOM05D006043 ORTHO05D007309 1.1e-10 70.5 113 45.1
TWI74G0769 Tripterygium wilfordii HOM05D006043 ORTHO05D007309 1.1e-10 70.5 113 45.1
THA.LOC104823222 Tarenaya hassleriana HOM05D006043 ORTHO05D007309 1.5e-10 70.1 73 47.9
AUR62037886 Chenopodium quinoa HOM05D006043 ORTHO05D007309 3.1e-08 62.4 134 35.1
TAR334G0001 Trochodendron aralioides HOM05D006043 ORTHO05D007309 5.2e-08 61.6 84 48.8
TAR369G1076 Trochodendron aralioides HOM05D006043 ORTHO05D007309 5.2e-08 61.6 84 48.8
SEGI_20897 Sequoiadendron giganteum HOM05D006043 ORTHO05D007309 6.8e-08 61.2 99 44.4


User provided reference genes

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