Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen09g003480 Solanum pennellii HOM05D005427 ORTHO05D006461 8.2e-126 453.8 233 100.0
Solyc09g008680.4 Solanum lycopersicum HOM05D005427 ORTHO05D006461 5.0e-123 444.5 233 97.0
PGSC0003DMG400012980 Solanum tuberosum HOM05D005427 ORTHO05D006461 2.3e-120 435.6 231 97.0
CAN.G1830.8 Capsicum annuum HOM05D005427 ORTHO05D006461 8.3e-94 347.4 225 80.0
Nitab4.5_0004281g0090 Nicotiana tabacum HOM05D005427 ORTHO05D006461 1.6e-84 316.6 231 71.9
Peaxi162Scf00500g00116 Petunia axillaris HOM05D005427 ORTHO05D006461 3.6e-73 278.9 205 71.2
Peaxi162Scf01051g00142 Petunia axillaris HOM05D005427 ORTHO05D006461 4.0e-72 275.4 222 67.1
Dinv36993 Davidia involucrata HOM05D005427 ORTHO05D006461 6.4e-62 241.5 231 54.1
CSS0032221 Camellia sinensis var. sinensis HOM05D005427 ORTHO05D006461 2.1e-60 236.5 231 53.2
CSS0026502 Camellia sinensis var. sinensis HOM05D005427 ORTHO05D006461 2.7e-60 236.1 231 53.7
GSVIVG01017423001 Vitis vinifera HOM05D005427 ORTHO05D006461 4.6e-60 235.3 234 51.3
CiPaw.08G147100 Carya illinoinensis HOM05D005427 ORTHO05D006461 6.0e-60 235.0 231 53.7
TAR628G1492 Trochodendron aralioides HOM05D001631 ORTHO05D001591 1.0e-59 234.2 231 53.7
CSS0024088 Camellia sinensis var. sinensis HOM05D005427 ORTHO05D006461 1.8e-59 233.4 231 52.8
Migut.F01758 Erythranthe guttata HOM05D005427 ORTHO05D006461 6.7e-59 231.5 221 56.1
QL06p037683 Quercus lobata HOM05D005427 ORTHO05D006461 5.6e-58 228.4 231 50.2
Atru.chr3.1127 Acer truncatum HOM05D005427 ORTHO05D006461 1.3e-57 227.3 232 50.9
Atru.chr3.1136 Acer truncatum HOM05D005427 ORTHO05D006461 1.3e-57 227.3 232 50.9
Rhsim07G0122400 Rhododendron simsii HOM05D005427 ORTHO05D006461 2.8e-57 226.1 244 52.9
Ciclev10026408m.g Citrus clementina HOM05D005427 ORTHO05D006461 3.7e-57 225.7 219 52.5
Dinv21205 Davidia involucrata HOM05D005427 ORTHO05D006461 4.5e-55 218.8 231 51.9
Gohir.A11G206966 Gossypium hirsutum HOM05D005427 ORTHO05D006461 5.8e-55 218.4 221 52.9
TAR376G0349 Trochodendron aralioides HOM05D005427 ORTHO05D006461 7.6e-55 218.0 231 50.2
PGR102G2470 Punica granatum HOM05D005427 ORTHO05D006461 9.9e-55 217.6 233 49.8
Prupe.6G211100 Prunus persica HOM05D005427 ORTHO05D006461 8.4e-54 214.5 219 49.3
Thecc.01G082100 Theobroma cacao HOM05D005427 ORTHO05D006461 1.1e-53 214.2 222 52.3
Gorai.007G232600 Gossypium raimondii HOM05D005427 ORTHO05D006461 1.9e-53 213.4 221 52.0
MD15G1405500 Malus domestica HOM05D005427 ORTHO05D006461 1.9e-53 213.4 220 51.8
Potri.017G091300 Populus trichocarpa HOM05D005427 ORTHO05D006461 2.4e-53 213.0 225 49.8
Nn1g05775 Nelumbo nucifera HOM05D005427 ORTHO05D006461 2.1e-52 209.9 228 48.7
RcHm_v2.0_Chr2g0109701 Rosa chinensis HOM05D005427 ORTHO05D006461 6.0e-52 208.4 221 51.1
COL.COLO4_11665 Corchorus olitorius HOM05D005427 ORTHO05D006461 3.9e-51 205.7 224 52.2
FvH4_1g18830 Fragaria vesca HOM05D005427 ORTHO05D006461 5.1e-51 205.3 219 48.9
TWI74G0676 Tripterygium wilfordii HOM05D005427 ORTHO05D006461 5.1e-51 205.3 221 50.7
Cpa.g.sc3.369 Carica papaya HOM05D005427 ORTHO05D006461 7.4e-50 201.4 232 45.7
Manes.13G105100 Manihot esculenta HOM05D005427 ORTHO05D006461 7.4e-50 201.4 217 50.2
Gohir.D11G216500 Gossypium hirsutum HOM05D005427 ORTHO05D006461 2.1e-49 199.9 206 52.9
FAN23G0196 Fragaria x ananassa HOM05D005427 ORTHO05D006461 1.4e-48 197.2 231 46.3
Cfa001616 Carpinus fangiana HOM05D005427 ORTHO05D006461 5.3e-48 195.3 231 45.5
Phvul.003G285200 Phaseolus vulgaris HOM05D005427 ORTHO05D006461 5.3e-48 195.3 234 44.9
Lalb_Chr04g0263231 Lupinus albus HOM05D005427 ORTHO05D006461 1.2e-47 194.1 220 46.4
THA.LOC104819282 Tarenaya hassleriana HOM05D005427 ORTHO05D006461 1.2e-47 194.1 220 45.5
Phvul.003G285800 Phaseolus vulgaris HOM05D005427 ORTHO05D006461 1.5e-47 193.7 234 45.3
ECA233G5189 Erigeron canadensis HOM05D005427 ORTHO05D006461 3.4e-47 192.6 226 48.2
vmacro07282 Vaccinium macrocarpon HOM05D005427 ORTHO05D006461 4.5e-47 192.2 233 46.4
SGA_v2.0_scaffold4G02171 Striga asiatica HOM05D005427 ORTHO05D006461 5.8e-47 191.8 223 47.1
CANSAT01G2304 Cannabis sativa HOM05D005427 ORTHO05D006461 7.6e-47 191.4 236 45.3
RcHm_v2.0_Chr5g0054161 Rosa chinensis HOM05D005427 ORTHO05D006461 1.0e-46 191.0 221 48.9
Glyma.08G273000 Glycine max HOM05D005427 ORTHO05D006461 3.8e-46 189.1 239 42.7
SGA_v2.0_scaffold70G23436 Striga asiatica HOM05D005427 ORTHO05D006461 4.9e-46 188.7 223 46.2
Aqoxy3G03178 Aquilegia oxysepala HOM05D005427 ORTHO05D006461 6.5e-46 188.3 212 43.4
SGA_v2.0_scaffold147G36350 Striga asiatica HOM05D005427 ORTHO05D006461 8.4e-46 188.0 223 46.2
DCAR_006436 Daucus carota HOM05D005427 ORTHO05D006461 2.5e-45 186.4 209 50.7
Lj3g0020172 Lotus japonicus HOM05D005427 ORTHO05D006461 4.2e-45 185.7 231 45.0
Eucgr.H02348 Eucalyptus grandis HOM05D005427 ORTHO05D006461 1.6e-44 183.7 218 45.4
AT3G49645 Arabidopsis thaliana HOM05D005427 ORTHO05D006461 3.5e-44 182.6 228 44.3
CARHR158680 Cardamine hirsuta HOM05D005427 ORTHO05D006461 3.5e-44 182.6 225 44.9
FAN19G1732 Fragaria x ananassa HOM05D005427 ORTHO05D006461 4.6e-44 182.2 248 42.3
AL7G47510 Arabidopsis lyrata HOM05D005427 ORTHO05D006461 6.0e-44 181.8 231 43.7
ClCG09G016510 Citrullus lanatus HOM05D005427 ORTHO05D006461 6.0e-44 181.8 223 46.2
vmacro05473 Vaccinium macrocarpon HOM05D005427 ORTHO05D006461 1.0e-43 181.0 262 42.7
TPR.G15264 Trifolium pratense HOM05D005427 ORTHO05D006461 1.8e-43 180.3 242 44.6
PSO761G0697 Papaver somniferum HOM05D005427 ORTHO05D006461 1.1e-42 177.6 231 42.0
CsaV3_7G007450 Cucumis sativus L. HOM05D005427 ORTHO05D006461 1.9e-42 176.8 222 45.5
Hund15020 Selenicereus undatus HOM05D005427 ORTHO05D006461 2.5e-42 176.4 233 40.8
Thhalv10019696m.g Eutrema salsugineum HOM05D005427 ORTHO05D006461 3.3e-42 176.0 219 45.7
CDE02G2678 Ceratophyllum demersum HOM05D005427 ORTHO05D006160 7.4e-42 174.9 231 41.1
Carub.0005s1599 Capsella rubella HOM05D005427 ORTHO05D006461 2.8e-41 172.9 219 42.9
Thhalv10010700m.g Eutrema salsugineum HOM05D005427 ORTHO05D006461 4.8e-41 172.2 219 44.3
HanXRQChr12g0368771 Helianthus annuus HOM05D005427 ORTHO05D006461 4.8e-41 172.2 211 45.0
Sed0018601 Sechium edule HOM05D005427 ORTHO05D006461 1.8e-40 170.2 220 43.2
AUR62041740 Chenopodium quinoa HOM05D005427 ORTHO05D006461 3.1e-40 169.5 213 45.5
BcaB01g00686 Brassica carinata HOM05D005427 ORTHO05D006461 4.1e-40 169.1 219 42.0
Aa31LG4G18120 Aethionema arabicum HOM05D005427 ORTHO05D006461 5.3e-40 168.7 222 43.2
MELO3C018556.2 Cucumis melo HOM05D005427 ORTHO05D006461 6.9e-40 168.3 221 43.0
Sp5g12450 Schrenkiella parvula HOM05D005427 ORTHO05D006461 1.2e-39 167.5 219 43.8
AL5G29490 Arabidopsis lyrata HOM05D007023 ORTHO05D008684 1.5e-39 167.2 217 44.2
Hund13132 Selenicereus undatus HOM05D005427 ORTHO05D006461 2.6e-39 166.4 233 38.6
Sc06g0009050 Simmondsia chinensis HOM05D005427 ORTHO05D006461 2.6e-39 166.4 227 40.5
Ah.01g015840 Amaranthus hybridus HOM05D005427 ORTHO05D006461 3.4e-39 166.0 231 42.4
Glyma.20G162400 Glycine max HOM05D005427 ORTHO05D006461 4.5e-39 165.6 239 39.7
Duzib264G0001 Durio zibethinus HOM05D005427 ORTHO05D006461 1.0e-38 164.5 181 48.1
A06p28350 Brassica napus HOM05D005427 ORTHO05D006461 1.7e-38 163.7 219 41.6
BraA06t25777Z Brassica rapa HOM05D005427 ORTHO05D006461 1.7e-38 163.7 219 41.6
arahy.Tifrunner.gnm1.ann1.SHER6S Arachis hypogaea HOM05D006058 ORTHO05D007686 3.8e-38 162.5 239 41.4
BcaC01g02424 Brassica carinata HOM05D005427 ORTHO05D006461 5.0e-38 162.2 219 41.1
C03p65440 Brassica napus HOM05D005427 ORTHO05D006461 5.0e-38 162.2 219 41.1
BolC3t18796H Brassica oleracea HOM05D005427 ORTHO05D006461 5.0e-38 162.2 219 41.1
Psat4g120800 Pisum sativum HOM05D005427 ORTHO05D006461 1.1e-37 161.0 246 37.8
PSO210G5957 Papaver somniferum HOM05D005427 ORTHO05D006461 5.5e-37 158.7 231 39.8
BraA07t29893Z Brassica rapa HOM05D005427 ORTHO05D006461 7.2e-37 158.3 219 38.8
Medtr8g067265 Medicago truncatula HOM05D005427 ORTHO05D006461 1.6e-36 157.1 220 41.8
Zm00001eb210960 Zea mays HOM05D005427 ORTHO05D006461 1.6e-36 157.1 216 38.0
arahy.Tifrunner.gnm1.ann1.Y2QWLJ Arachis hypogaea HOM05D006058 ORTHO05D007686 3.6e-36 156.0 275 37.5
AUR62024067 Chenopodium quinoa HOM05D005427 ORTHO05D006461 4.6e-36 155.6 207 44.4
Zm00001eb064010 Zea mays HOM05D005427 ORTHO05D006461 1.0e-35 154.5 239 36.0
EL10Ac9g20957 Beta vulgaris HOM05D005427 ORTHO05D006461 5.1e-35 152.1 216 42.1
Haze_16903 Corylus avellana HOM05D005427 ORTHO05D006461 5.1e-35 152.1 252 38.1
MD01G1046300 Malus domestica HOM05D005427 ORTHO05D006461 8.7e-35 151.4 180 45.6
BcaC07g39428 Brassica carinata HOM05D005427 ORTHO05D006461 3.3e-34 149.4 219 39.3
AUR62012052 Chenopodium quinoa HOM05D005427 ORTHO05D006461 3.3e-34 149.4 213 42.3
Ah.01g003640 Amaranthus hybridus HOM05D000109 ORTHO05D000520 5.7e-34 148.7 207 41.1
AUR62019836 Chenopodium quinoa HOM05D005427 ORTHO05D006461 9.7e-34 147.9 223 37.2
Hund00873 Selenicereus undatus HOM05D005427 ORTHO05D006461 1.3e-33 147.5 212 39.2
A07p22100 Brassica napus HOM05D005427 ORTHO05D006461 3.7e-33 146.0 239 35.6
THA.LOC104799739 Tarenaya hassleriana HOM05D005427 ORTHO05D006461 4.8e-33 145.6 236 34.7
Hma1.2p1_0561F.1_g178960 Hydrangea macrophylla HOM05D005427 ORTHO05D006461 1.8e-32 143.7 160 50.6
Nitab4.5_0006709g0040 Nicotiana tabacum HOM05D005427 ORTHO05D006461 6.9e-32 141.7 97 73.2
Os10g0360900 Oryza sativa ssp. japonica HOM05D005427 ORTHO05D006461 2.0e-31 140.2 219 34.7
BraA06t24896Z Brassica rapa HOM05D007023 ORTHO05D008684 1.0e-30 137.9 204 39.7
Phvul.002G065300 Phaseolus vulgaris HOM05D005427 ORTHO05D006461 2.9e-30 136.3 176 42.6
BcaB02g09598 Brassica carinata HOM05D005427 ORTHO05D006461 8.5e-30 134.8 220 37.3
Lsat_1_v5_gn_8_18901 Lactuca sativa HOM05D005427 ORTHO05D006461 3.2e-29 132.9 226 38.1
FAN27G1155 Fragaria x ananassa HOM05D005427 ORTHO05D006461 9.4e-29 131.3 221 37.1
C08p24660 Brassica napus HOM05D007023 ORTHO05D008684 1.6e-28 130.6 205 39.0
BolC8t50081H Brassica oleracea HOM05D007023 ORTHO05D008684 1.6e-28 130.6 205 39.0
HPP92_024834 Vanilla planifolia HOM05D005427 ORTHO05D006461 1.1e-26 124.4 210 34.3
FAN26G2664 Fragaria x ananassa HOM05D005427 ORTHO05D006461 3.3e-26 122.9 226 37.2
Sabra17G0080400 Salix brachista HOM05D005427 ORTHO05D006461 3.3e-26 122.9 194 38.1
HPP92_026626 Vanilla planifolia HOM05D005427 ORTHO05D006461 3.3e-26 122.9 210 33.8
Cc09_g03000 Coffea canephora HOM05D005427 ORTHO05D006461 7.4e-26 121.7 140 51.4
Os07g0264900 Oryza sativa ssp. japonica HOM05D005427 ORTHO05D006461 2.2e-25 120.2 182 36.3
Pp3c24_9930 Physcomitrium patens HOM05D005427 ORTHO05D006461 2.2e-25 120.2 226 30.5
TWI77G0140 Tripterygium wilfordii HOM05D005427 ORTHO05D006461 2.8e-25 119.8 124 49.2
A06p18060 Brassica napus HOM05D007023 ORTHO05D008684 1.8e-24 117.1 204 36.8
AagrBONN_evm.TU.Sc2ySwM_228.2937 Anthoceros agrestis HOM05D005427 ORTHO05D006461 2.0e-23 113.6 212 33.0
Cc09_g02990 Coffea canephora HOM05D005427 ORTHO05D006461 5.0e-22 109.0 95 58.9
EL10Ac6g13479 Beta vulgaris HOM05D005427 ORTHO05D006461 2.3e-19 100.1 180 33.9
Rhsim10G0082400 Rhododendron simsii HOM05D005427 ORTHO05D006461 2.0e-18 97.1 64 70.3
CSS0003252 Camellia sinensis var. sinensis HOM05D005427 ORTHO05D006461 3.3e-18 96.3 90 57.8
VMungo1309G2225 Vigna mungo HOM05D005427 ORTHO05D006461 1.3e-17 94.4 141 39.7
Carub.0005s0959 Capsella rubella HOM05D005427 ORTHO05D006461 1.7e-17 94.0 122 44.3
Ah.16g109230 Amaranthus hybridus HOM05D005427 ORTHO05D006461 6.3e-17 92.0 104 44.2
SMO367G1008 Selaginella moellendorffii HOM05D005427 ORTHO05D006461 6.3e-17 92.0 181 32.6
SalBow7G4264 Salvia bowleyana HOM05D005427 ORTHO05D006461 2.4e-16 90.1 101 50.5
MSTRG.375 Avicennia marina HOM05D005427 ORTHO05D006461 1.2e-15 87.8 81 56.8
MBI16_g14676_MAGBIO Magnolia biondii HOM05D005427 ORTHO05D006461 2.0e-15 87.0 165 34.5
Actinidia11934 Actinidia chinensis HOM05D005427 ORTHO05D006461 1.0e-14 84.7 121 42.1
MD00G1139600 Malus domestica HOM05D005427 ORTHO05D006461 1.0e-14 84.7 56 71.4
MD04G1240700 Malus domestica HOM05D005427 ORTHO05D006461 1.0e-14 84.7 56 71.4
MBI16_g26727_MAGBIO Magnolia biondii HOM05D005427 ORTHO05D006461 5.5e-13 79.0 94 44.7
Mapoly0002s0147 Marchantia polymorpha HOM05D005427 ORTHO05D006461 2.6e-10 70.1 233 27.5
AagrBONN_evm.TU.Sc2ySwM_344.3300 Anthoceros agrestis HOM05D005427 ORTHO05D006461 5.7e-10 68.9 130 36.2
SEGI_00262 Sequoiadendron giganteum HOM05D005427 ORTHO05D006461 1.4e-08 64.3 88 38.6
Mapoly0085s0034 Marchantia polymorpha HOM05D005427 ORTHO05D006461 4.1e-08 62.8 223 27.8
Mapoly0028s0128 Marchantia polymorpha HOM05D005427 ORTHO05D006461 1.6e-07 60.8 215 27.4


User provided reference genes

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