Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen09g003410 Solanum pennellii HOM05D003951 ORTHO05D005378 0.0e+00 1961.4 986 100.0
Solyc09g008610.4 Solanum lycopersicum HOM05D003951 ORTHO05D005378 0.0e+00 1928.7 986 98.6
PGSC0003DMG400012982 Solanum tuberosum HOM05D003951 ORTHO05D005378 0.0e+00 1912.1 986 97.3
CAN.G1759.1 Capsicum annuum HOM05D003951 ORTHO05D005378 0.0e+00 1768.8 955 92.5
Nitab4.5_0008726g0020 Nicotiana tabacum HOM05D003951 ORTHO05D005378 0.0e+00 1766.9 987 89.9
Peaxi162Scf01195g00118 Petunia axillaris HOM05D003951 ORTHO05D005378 0.0e+00 1721.1 986 87.0
Nitab4.5_0010350g0010 Nicotiana tabacum HOM05D003951 ORTHO05D005378 0.0e+00 1668.7 987 82.2
Nitab4.5_0000132g0420 Nicotiana tabacum HOM05D003951 ORTHO05D005378 0.0e+00 1657.9 987 82.0
Nitab4.5_0004281g0080 Nicotiana tabacum HOM05D003951 ORTHO05D005378 0.0e+00 1606.7 900 89.6
Dinv30270 Davidia involucrata HOM05D003951 ORTHO05D005378 0.0e+00 1486.5 987 72.6
Dinv14244 Davidia involucrata HOM05D003951 ORTHO05D005378 0.0e+00 1466.1 957 73.8
CSS0015540 Camellia sinensis var. sinensis HOM05D003951 ORTHO05D005378 0.0e+00 1463.7 988 72.0
Hma1.2p1_0590F.1_g185010 Hydrangea macrophylla HOM05D003951 ORTHO05D005378 0.0e+00 1458.7 987 71.1
Prupe.1G450600 Prunus persica HOM05D003951 ORTHO05D005378 0.0e+00 1453.7 987 71.3
GSVIVG01035648001 Vitis vinifera HOM05D003951 ORTHO05D005378 0.0e+00 1451.4 989 71.5
MSTRG.19211 Avicennia marina HOM05D003951 ORTHO05D005378 0.0e+00 1444.5 987 70.4
Oeu038879.1 Olea europaea HOM05D003951 ORTHO05D005378 0.0e+00 1437.9 987 69.5
Thecc.09G042400 Theobroma cacao HOM05D003951 ORTHO05D005378 0.0e+00 1437.2 988 70.1
MD08G1115900 Malus domestica HOM05D003951 ORTHO05D005378 0.0e+00 1434.9 987 70.3
Cfa013355 Carpinus fangiana HOM05D003951 ORTHO05D005378 0.0e+00 1433.7 987 70.0
Migut.J00480 Erythranthe guttata HOM05D003951 ORTHO05D005378 0.0e+00 1426.4 987 69.2
TAR383G0035 Trochodendron aralioides HOM05D003951 ORTHO05D005378 0.0e+00 1426.4 987 69.7
Cpa.g.sc7.257 Carica papaya HOM05D003951 ORTHO05D005378 0.0e+00 1425.2 986 69.4
Gorai.010G108200 Gossypium raimondii HOM05D003951 ORTHO05D005378 0.0e+00 1423.3 986 69.7
Gohir.D06G093700 Gossypium hirsutum HOM05D003951 ORTHO05D005378 0.0e+00 1422.9 988 69.5
Duzib187G0774 Durio zibethinus HOM05D003951 ORTHO05D005378 0.0e+00 1422.5 996 69.1
Cc06_g04830 Coffea canephora HOM05D003951 ORTHO05D005378 0.0e+00 1421.8 974 70.5
Atru.chr7.2135 Acer truncatum HOM05D003951 ORTHO05D005378 0.0e+00 1420.6 987 69.3
Gohir.A06G094100 Gossypium hirsutum HOM05D003951 ORTHO05D005378 0.0e+00 1417.5 988 69.3
MD15G1095600 Malus domestica HOM05D003951 ORTHO05D005378 0.0e+00 1415.6 987 69.6
Manes.03G061800 Manihot esculenta HOM05D003951 ORTHO05D005378 0.0e+00 1414.4 987 68.3
CiPaw.08G024600 Carya illinoinensis HOM05D003951 ORTHO05D005378 0.0e+00 1413.7 988 69.4
Ciclev10007348m.g Citrus clementina HOM05D003951 ORTHO05D005378 0.0e+00 1411.0 989 70.0
DCAR_004489 Daucus carota HOM05D003951 ORTHO05D005378 0.0e+00 1404.4 1080 64.7
Gorai.004G290400 Gossypium raimondii HOM05D003951 ORTHO05D005378 0.0e+00 1399.8 987 68.7
Gohir.D08G272000 Gossypium hirsutum HOM05D003951 ORTHO05D005378 0.0e+00 1398.3 987 68.6
QL12p029450 Quercus lobata HOM05D003951 ORTHO05D005378 0.0e+00 1396.3 986 68.3
vmacro10453 Vaccinium macrocarpon HOM05D003951 ORTHO05D005378 0.0e+00 1395.9 1006 68.6
RcHm_v2.0_Chr6g0305971 Rosa chinensis HOM05D003951 ORTHO05D005378 0.0e+00 1394.8 989 68.5
Oeu017004.2 Olea europaea HOM05D003951 ORTHO05D005378 0.0e+00 1393.6 1082 64.3
SalBow3G1921 Salvia bowleyana HOM05D003951 ORTHO05D005378 0.0e+00 1392.9 988 68.3
Gohir.D13G192700 Gossypium hirsutum HOM05D003951 ORTHO05D005378 0.0e+00 1390.6 989 67.6
Nn2g11661 Nelumbo nucifera HOM05D003951 ORTHO05D005378 0.0e+00 1389.0 985 67.6
Potri.018G039800 Populus trichocarpa HOM05D003951 ORTHO05D005378 0.0e+00 1385.2 987 67.5
Sabra06G0187900 Salix brachista HOM05D003951 ORTHO05D005378 0.0e+00 1385.2 1007 66.6
Aqoxy7G01531 Aquilegia oxysepala HOM05D003951 ORTHO05D005378 0.0e+00 1384.8 987 67.4
CANSAT25G2930 Cannabis sativa HOM05D003951 ORTHO05D005378 0.0e+00 1384.8 988 68.1
FAN27G3265 Fragaria x ananassa HOM05D003951 ORTHO05D005378 0.0e+00 1382.5 988 68.5
Gorai.013G218700 Gossypium raimondii HOM05D003951 ORTHO05D005378 0.0e+00 1382.5 989 67.1
Potri.006G240300 Populus trichocarpa HOM05D003951 ORTHO05D005378 0.0e+00 1381.7 987 67.5
Sabra18G0039700 Salix brachista HOM05D003951 ORTHO05D005378 0.0e+00 1381.7 986 67.2
Gohir.A13G186000 Gossypium hirsutum HOM05D003951 ORTHO05D005378 0.0e+00 1381.3 989 67.3
Gohir.A08G250500 Gossypium hirsutum HOM05D003951 ORTHO05D005378 0.0e+00 1380.5 987 67.9
FvH4_2g35850 Fragaria vesca HOM05D003951 ORTHO05D005378 0.0e+00 1380.2 988 68.2
TWI32G0786 Tripterygium wilfordii HOM05D003951 ORTHO05D005378 0.0e+00 1380.2 987 66.5
FAN20G1017 Fragaria x ananassa HOM05D003951 ORTHO05D005378 0.0e+00 1377.1 988 68.1
SGA_v2.0_scaffold657G53382 Striga asiatica HOM05D003951 ORTHO05D005378 0.0e+00 1376.7 991 67.2
Eucgr.C02905 Eucalyptus grandis HOM05D003951 ORTHO05D005378 0.0e+00 1374.8 987 67.0
FAN15G0863 Fragaria x ananassa HOM05D003951 ORTHO05D005378 0.0e+00 1373.2 988 67.7
Glyma.06G083700 Glycine max HOM05D003951 ORTHO05D005378 0.0e+00 1372.5 987 65.8
arahy.Tifrunner.gnm1.ann1.6KB6B4 Arachis hypogaea HOM05D003951 ORTHO05D005378 0.0e+00 1369.8 987 66.3
PGR044G0887 Punica granatum HOM05D003951 ORTHO05D005378 0.0e+00 1368.6 988 66.0
arahy.Tifrunner.gnm1.ann1.ZA6ZKK Arachis hypogaea HOM05D003951 ORTHO05D005378 0.0e+00 1364.7 987 66.1
Glyma.04G082000 Glycine max HOM05D003951 ORTHO05D005378 0.0e+00 1363.6 987 65.7
Psat5g022720 Pisum sativum HOM05D003951 ORTHO05D005378 0.0e+00 1359.4 987 65.5
Hund19527 Selenicereus undatus HOM05D003951 ORTHO05D005378 0.0e+00 1359.4 987 66.9
Thhalv10012570m.g Eutrema salsugineum HOM05D003951 ORTHO05D005378 0.0e+00 1357.4 986 66.0
Lalb_Chr08g0243161 Lupinus albus HOM05D003951 ORTHO05D005378 0.0e+00 1353.6 987 65.6
VMungo1309G1090 Vigna mungo HOM05D003951 ORTHO05D005378 0.0e+00 1353.6 988 65.6
Lj1g0011830 Lotus japonicus HOM05D003951 ORTHO05D005378 0.0e+00 1352.4 989 65.3
EL10Ac2g04048 Beta vulgaris HOM05D003951 ORTHO05D005378 0.0e+00 1350.1 987 66.7
BcaNung01934 Brassica carinata HOM05D003951 ORTHO05D005378 0.0e+00 1350.1 986 66.0
PSO210G0075 Papaver somniferum HOM05D003951 ORTHO05D005378 0.0e+00 1350.1 988 66.1
PSO210G7231 Papaver somniferum HOM05D003951 ORTHO05D005378 0.0e+00 1349.0 988 66.0
BcaC03g13375 Brassica carinata HOM05D003951 ORTHO05D005378 0.0e+00 1347.8 986 66.0
TPR.G1335 Trifolium pratense HOM05D003951 ORTHO05D005378 0.0e+00 1346.3 987 65.2
CARHR201660 Cardamine hirsuta HOM05D003951 ORTHO05D005378 0.0e+00 1345.9 986 65.4
Sc23g0005190 Simmondsia chinensis HOM05D003951 ORTHO05D005378 0.0e+00 1345.9 986 66.2
Sp6g32040 Schrenkiella parvula HOM05D003951 ORTHO05D005378 0.0e+00 1345.5 986 65.3
Phvul.009G107800 Phaseolus vulgaris HOM05D003951 ORTHO05D005378 0.0e+00 1345.1 987 65.5
C02p05210 Brassica napus HOM05D003951 ORTHO05D005378 0.0e+00 1343.9 986 66.0
Medtr3g110140 Medicago truncatula HOM05D003951 ORTHO05D005378 0.0e+00 1343.6 987 64.8
BolC2t06471H Brassica oleracea HOM05D003951 ORTHO05D005378 0.0e+00 1343.2 998 65.4
Ca_15606_v3 Cicer arietinum L. HOM05D003951 ORTHO05D005378 0.0e+00 1343.2 987 64.4
THA.LOC104814774 Tarenaya hassleriana HOM05D003951 ORTHO05D005378 0.0e+00 1340.9 986 66.4
BcaB08g37043 Brassica carinata HOM05D003951 ORTHO05D005378 0.0e+00 1337.8 986 65.7
MBI04_g14936_MAGBIO Magnolia biondii HOM05D003951 ORTHO05D005378 0.0e+00 1337.4 990 64.8
A10p26200 Brassica napus HOM05D003951 ORTHO05D005378 0.0e+00 1336.2 986 65.3
BcaC04g19214 Brassica carinata HOM05D003951 ORTHO05D005378 0.0e+00 1335.9 987 65.5
C09p65250 Brassica napus HOM05D003951 ORTHO05D005378 0.0e+00 1334.3 987 65.5
Lalb_Chr23g0269551 Lupinus albus HOM05D003951 ORTHO05D005378 0.0e+00 1333.5 987 65.1
AT5G11560 Arabidopsis thaliana HOM05D003951 ORTHO05D005378 0.0e+00 1332.0 986 64.8
AL6G22230 Arabidopsis lyrata HOM05D003951 ORTHO05D005378 0.0e+00 1331.6 986 64.9
ECA233G3193 Erigeron canadensis HOM05D003951 ORTHO05D005378 0.0e+00 1331.2 959 67.2
Carub.0006s1003 Capsella rubella HOM05D003951 ORTHO05D005378 0.0e+00 1330.5 986 64.8
BraA10t44677Z Brassica rapa HOM05D003951 ORTHO05D005378 0.0e+00 1328.9 1003 64.2
HanXRQChr08g0221151 Helianthus annuus HOM05D003951 ORTHO05D005378 0.0e+00 1328.2 990 66.5
CANSAT56G2409 Cannabis sativa HOM05D003951 ORTHO05D005378 0.0e+00 1327.0 995 65.4
BolC9t59353H Brassica oleracea HOM05D003951 ORTHO05D005378 0.0e+00 1324.3 1010 64.0
MELO3C011151.2 Cucumis melo HOM05D003951 ORTHO05D005378 0.0e+00 1318.9 984 63.8
Lsat_1_v5_gn_6_63741 Lactuca sativa HOM05D003951 ORTHO05D005378 0.0e+00 1318.9 1014 64.4
Sed0007642 Sechium edule HOM05D003951 ORTHO05D005378 0.0e+00 1318.1 989 63.1
Sed0024259 Sechium edule HOM05D003951 ORTHO05D005378 0.0e+00 1314.3 989 62.7
CANSAT56G0789 Cannabis sativa HOM05D003951 ORTHO05D005378 0.0e+00 1311.6 995 65.2
CsaV3_2G030980 Cucumis sativus L. HOM05D003951 ORTHO05D005378 0.0e+00 1307.4 984 63.0
ClCG08G012310 Citrullus lanatus HOM05D003951 ORTHO05D005378 0.0e+00 1305.8 990 62.7
AUR62041721 Chenopodium quinoa HOM05D003951 ORTHO05D005378 0.0e+00 1299.3 987 64.6
AUR62043518 Chenopodium quinoa HOM05D003951 ORTHO05D005378 0.0e+00 1299.3 987 64.8
COL.COLO4_18674 Corchorus olitorius HOM05D003951 ORTHO05D005378 0.0e+00 1298.5 903 69.8
Lj8A588G18 Lonicera japonica HOM05D003951 ORTHO05D005378 0.0e+00 1279.6 968 65.4
BraA02t05087Z Brassica rapa HOM05D003951 ORTHO05D005378 0.0e+00 1279.2 998 63.0
AUR62009306 Chenopodium quinoa HOM05D003951 ORTHO05D005378 0.0e+00 1261.5 987 63.1
ATR0315G102 Amborella trichopoda HOM05D003951 ORTHO05D005378 0.0e+00 1240.7 983 60.8
Aa31LG3G15640 Aethionema arabicum HOM05D003951 ORTHO05D005378 0.0e+00 1236.5 986 62.4
A02p01070 Brassica napus HOM05D003951 ORTHO05D005378 0.0e+00 1219.1 986 61.2
CDE09G1231 Ceratophyllum demersum HOM05D003951 ORTHO05D005378 0.0e+00 1215.7 987 60.4
Os05g0230600 Oryza sativa ssp. japonica HOM05D003951 ORTHO05D005378 0.0e+00 1210.3 967 59.5
Ah.16g105420 Amaranthus hybridus HOM05D003951 ORTHO05D005378 0.0e+00 1190.3 1015 59.6
Zm00001eb350390 Zea mays HOM05D003951 ORTHO05D005378 0.0e+00 1189.1 966 58.6
Zm00001eb284300 Zea mays HOM05D003951 ORTHO05D005378 0.0e+00 1175.2 986 57.1
SGA_v2.0_scaffold40G15445 Striga asiatica HOM05D003951 ORTHO05D005378 0.0e+00 1159.1 882 63.9
Medtr3g110090 Medicago truncatula HOM05D003951 ORTHO05D005378 0.0e+00 1146.7 847 63.8
Ah.10g035090 Amaranthus hybridus HOM05D003951 ORTHO05D005378 0.0e+00 1129.4 848 64.0
SHI18663 Sapria himalayana HOM05D003951 ORTHO05D005378 1.9e-304 1049.3 809 62.4
CDE02G1137 Ceratophyllum demersum HOM05D003951 ORTHO05D005378 3.5e-303 1045.0 956 55.3
Mapoly0001s0045 Marchantia polymorpha HOM05D003951 ORTHO05D005378 5.7e-285 984.6 999 51.7
Pp3c24_6940 Physcomitrium patens HOM05D003951 ORTHO05D005378 1.3e-276 956.8 994 50.4
Haze_16526 Corylus avellana HOM05D003951 ORTHO05D005378 6.5e-257 891.3 662 65.4
Actinidia14667 Actinidia chinensis HOM05D003951 ORTHO05D005378 4.5e-250 868.6 541 74.3
SMO361G0709 Selaginella moellendorffii HOM05D003951 ORTHO05D005378 8.6e-241 837.8 956 46.5
Ah.16g105540 Amaranthus hybridus HOM05D003951 ORTHO05D005378 1.8e-238 830.1 691 59.5
Lj7A704G78 Lonicera japonica HOM05D003951 ORTHO05D005378 1.9e-235 820.1 660 60.9
AagrBONN_evm.TU.Sc2ySwM_228.1359 Anthoceros agrestis HOM05D003951 ORTHO05D005378 4.6e-210 735.7 887 43.3
Ah.16g105530 Amaranthus hybridus HOM05D003951 ORTHO05D005378 7.6e-205 718.4 530 66.4
Actinidia15735 Actinidia chinensis HOM05D003951 ORTHO05D005378 1.0e-185 654.8 812 47.2
TAR626G1339 Trochodendron aralioides HOM05D003951 ORTHO05D005378 2.4e-166 590.5 362 75.4
HPP92_003925 Vanilla planifolia HOM05D003951 ORTHO05D005378 2.2e-156 557.4 918 38.2
Actinidia14668 Actinidia chinensis HOM05D003951 ORTHO05D005378 2.2e-151 540.8 423 64.5
Lj7C704T11 Lonicera japonica HOM05D003951 ORTHO05D005378 4.2e-139 500.0 296 81.4
Haze_16527 Corylus avellana HOM05D003951 ORTHO05D005378 5.5e-139 499.6 296 80.4
CBR_g46228 Chara braunii HOM05D000019 ORTHO05D000048 1.0e-132 478.8 849 36.5
Gohir.A08G250566 Gossypium hirsutum HOM05D003951 ORTHO05D005378 1.4e-129 468.4 282 79.1
PRCOL_00001466 Prasinoderma coloniale HOM05D003951 ORTHO05D005378 2.9e-119 434.1 1038 31.0
TAR626G0188 Trochodendron aralioides HOM05D003951 ORTHO05D005378 3.3e-107 394.0 255 74.1
TAR626G1232 Trochodendron aralioides HOM05D003951 ORTHO05D005378 7.3e-107 392.9 333 60.1
Cre01.g042550 Chlamydomonas reinhardtii HOM05D003951 ORTHO05D005378 1.1e-105 389.0 1029 32.0
vmacro07087 Vaccinium macrocarpon HOM05D003951 ORTHO05D005378 2.2e-103 381.3 663 40.1
Hma1.2p1_1163F.1_g262790 Hydrangea macrophylla HOM05D003951 ORTHO05D005378 3.8e-87 327.4 319 53.0
unitig_22.g5110 Utricularia gibba HOM05D003951 ORTHO05D020105 1.9e-86 325.1 383 46.0
MCO05G363 Micromonas commoda HOM05D003951 ORTHO05D005378 7.9e-77 293.1 442 38.0
Actinidia13321 Actinidia chinensis HOM05D003951 ORTHO05D005378 3.3e-75 287.7 259 57.9
Psat2g043440 Pisum sativum HOM05D003951 ORTHO05D005378 1.7e-71 275.4 368 43.8
Lj6g0012970 Lotus japonicus HOM05D003951 ORTHO05D006115 1.8e-57 228.8 251 48.2
CBR_g46226 Chara braunii HOM05D003951 ORTHO05D005378 5.0e-55 220.7 185 56.2
Nn3g18131 Nelumbo nucifera HOM05D003951 ORTHO05D005378 9.4e-54 216.5 147 73.5
BcaB01g05473 Brassica carinata HOM05D003951 ORTHO05D005378 3.7e-50 204.5 129 73.6
C03p05840 Brassica napus HOM05D003951 ORTHO05D005378 4.1e-49 201.1 125 75.2
Actinidia31233 Actinidia chinensis HOM05D006865 ORTHO05D009005 2.0e-48 198.7 140 65.7
Cfa023291 Carpinus fangiana HOM05D003951 ORTHO05D005378 1.4e-46 192.6 1033 23.0
BolC3t13096H Brassica oleracea HOM05D003951 ORTHO05D005378 2.7e-45 188.3 125 72.8
DCAR_004486 Daucus carota HOM05D003951 ORTHO05D035008 2.0e-43 182.2 105 80.0
Peaxi162Scf00110g00822 Petunia axillaris HOM05D003951 ORTHO05D005378 2.0e-43 182.2 200 57.0
BolC3t13097H Brassica oleracea HOM05D003951 ORTHO05D020105 1.6e-32 146.0 104 68.3
BcaB01g05472 Brassica carinata HOM05D003951 ORTHO05D020105 3.5e-32 144.8 104 68.3
C03p05850 Brassica napus HOM05D003951 ORTHO05D020105 3.5e-32 144.8 104 68.3
Peaxi162Scf00110g00823 Petunia axillaris HOM05D003951 ORTHO05D305850 1.7e-31 142.5 182 45.6
Hma1.2p1_1163F.1_g262780 Hydrangea macrophylla HOM05D003951 ORTHO05D033496 3.6e-29 134.8 85 75.3
Peaxi162Scf00110g00821 Petunia axillaris HOM05D003951 ORTHO05D035008 1.1e-22 113.2 82 64.6
CiPaw.07G205600 Carya illinoinensis HOM05D003951 ORTHO05D005378 3.6e-21 108.2 82 56.1
A03p05100 Brassica napus HOM05D003951 ORTHO05D033496 8.9e-20 103.6 121 51.2
BraA03t09844Z Brassica rapa HOM05D003951 ORTHO05D033496 8.9e-20 103.6 121 51.2
Dinv34398 Davidia involucrata HOM05D003951 ORTHO05D005378 5.7e-19 100.9 63 74.6
EL10Ac6g13930 Beta vulgaris HOM05D001881 ORTHO05D001856 8.3e-18 97.1 62 71.0
CiPaw.07G205500 Carya illinoinensis HOM05D003951 ORTHO05D020105 8.3e-18 97.1 71 66.2
Nn3g18130 Nelumbo nucifera HOM05D003951 ORTHO05D020105 5.4e-17 94.4 72 68.1
CAN.G541.23 Capsicum annuum HOM05D004796 ORTHO05D006527 2.7e-16 92.0 53 77.4
Ah.04g155890 Amaranthus hybridus HOM05D003518 ORTHO05D031015 3.5e-16 91.7 62 67.7
Ah.05g173020 Amaranthus hybridus HOM05D003951 ORTHO05D031015 6.6e-15 87.4 72 59.7
SHI18664 Sapria himalayana HOM05D003951 ORTHO05D020105 1.5e-14 86.3 137 40.1
Ah.05g172920 Amaranthus hybridus HOM05D003951 ORTHO05D031015 2.5e-14 85.5 72 58.3
TAR629G0021 Trochodendron aralioides HOM05D003951 ORTHO05D000285 9.5e-14 83.6 166 34.3
Psat6g121680 Pisum sativum HOM05D000840 ORTHO05D000670 6.8e-12 77.4 50 68.0
Ah.04g157730 Amaranthus hybridus HOM05D031501 ORTHO05D060762 4.3e-06 58.2 54 55.6
Psat1g107320 Pisum sativum HOM05D001108 ORTHO05D001619 4.3e-06 58.2 116 31.0


User provided reference genes

Program Settings