Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen09g003280 Solanum pennellii HOM05D005036 ORTHO05D005881 6.4e-85 317.8 211 100.0
Solyc09g008450.3 Solanum lycopersicum HOM05D005036 ORTHO05D005881 1.4e-84 316.6 211 97.6
PGSC0003DMG400003873 Solanum tuberosum HOM05D005036 ORTHO05D005881 5.1e-82 308.1 211 98.1
Nitab4.5_0002373g0080 Nicotiana tabacum HOM05D005036 ORTHO05D005881 1.6e-64 250.0 207 86.0
Nitab4.5_0003314g0090 Nicotiana tabacum HOM05D005036 ORTHO05D005881 4.8e-64 248.4 207 85.0
Peaxi162Scf01128g00018 Petunia axillaris HOM05D005036 ORTHO05D005881 2.1e-56 223.0 203 66.5
Nitab4.5_0000132g0510 Nicotiana tabacum HOM05D005036 ORTHO05D005881 1.5e-46 190.3 199 74.4
CAN.G488.30 Capsicum annuum HOM05D005036 ORTHO05D005881 2.3e-42 176.4 201 71.1
Sopen10g033320 Solanum pennellii HOM05D005036 ORTHO05D005881 3.0e-42 176.0 201 71.1
PGSC0003DMG400028280 Solanum tuberosum HOM05D005036 ORTHO05D005881 1.9e-41 173.3 200 71.0
Oeu016995.1 Olea europaea HOM05D005036 ORTHO05D005881 3.3e-41 172.6 206 70.9
Peaxi162Scf00110g00120 Petunia axillaris HOM05D005036 ORTHO05D005881 4.8e-40 168.7 201 69.2
Nitab4.5_0003268g0010 Nicotiana tabacum HOM05D005036 ORTHO05D005881 6.3e-40 168.3 201 59.2
Oeu056532.1 Olea europaea HOM05D005036 ORTHO05D005881 5.3e-39 165.2 196 70.9
Nn2g13858 Nelumbo nucifera HOM05D005036 ORTHO05D005881 9.0e-39 164.5 201 69.2
Actinidia31315 Actinidia chinensis HOM05D005036 ORTHO05D005881 1.2e-38 164.1 201 67.7
Actinidia32478 Actinidia chinensis HOM05D005036 ORTHO05D005881 2.6e-38 162.9 201 65.7
Atru.chr8.1751 Acer truncatum HOM05D005036 ORTHO05D005881 5.9e-38 161.8 204 69.1
Cfa017655 Carpinus fangiana HOM05D005036 ORTHO05D005881 1.3e-37 160.6 202 64.9
Sc02g0001470 Simmondsia chinensis HOM05D005036 ORTHO05D005881 2.9e-37 159.5 203 56.7
HanXRQChr13g0400721 Helianthus annuus HOM05D005036 ORTHO05D005881 3.8e-37 159.1 199 67.8
Haze_20497 Corylus avellana HOM05D005036 ORTHO05D005881 5.0e-37 158.7 202 62.9
Thecc.05G071400 Theobroma cacao HOM05D005036 ORTHO05D005881 1.1e-36 157.5 205 67.3
EL10Ac7g16693 Beta vulgaris HOM05D005036 ORTHO05D005881 2.5e-36 156.4 203 68.5
SGA_v2.0_scaffold40G15474 Striga asiatica HOM05D005036 ORTHO05D005881 5.5e-36 155.2 206 66.5
Migut.J00453 Erythranthe guttata HOM05D005036 ORTHO05D005881 7.2e-36 154.8 199 67.8
Cc06_g04530 Coffea canephora HOM05D005036 ORTHO05D005881 9.4e-36 154.5 206 67.0
MD12G1106800 Malus domestica HOM05D005036 ORTHO05D005881 9.4e-36 154.5 203 69.0
Ciclev10012800m.g Citrus clementina HOM05D005036 ORTHO05D005881 2.7e-35 152.9 198 69.2
Gohir.D01G201000 Gossypium hirsutum HOM05D005036 ORTHO05D005881 2.7e-35 152.9 207 65.2
Aqoxy1G01100 Aquilegia oxysepala HOM05D005036 ORTHO05D005881 6.1e-35 151.8 203 61.6
AUR62041564 Chenopodium quinoa HOM05D005036 ORTHO05D005881 7.9e-35 151.4 200 65.5
TWI53G1582 Tripterygium wilfordii HOM05D005036 ORTHO05D005881 7.9e-35 151.4 201 66.7
Cpa.g.sc92.91 Carica papaya HOM05D005036 ORTHO05D005881 1.0e-34 151.0 203 63.1
MSTRG.10334 Avicennia marina HOM05D005036 ORTHO05D005881 1.4e-34 150.6 205 55.1
FAN05G3428 Fragaria x ananassa HOM05D005036 ORTHO05D005881 1.4e-34 150.6 189 70.9
FAN09G0503 Fragaria x ananassa HOM05D005036 ORTHO05D000003 1.4e-34 150.6 189 70.9
RcHm_v2.0_Chr3g0470841 Rosa chinensis HOM05D005036 ORTHO05D005881 1.4e-34 150.6 189 71.4
Hund20124 Selenicereus undatus HOM05D005036 ORTHO05D005881 1.4e-34 150.6 216 64.8
SGA_v2.0_scaffold224G42932 Striga asiatica HOM05D005036 ORTHO05D005881 1.4e-34 150.6 194 63.4
TAR623G1598 Trochodendron aralioides HOM05D005036 ORTHO05D005881 1.4e-34 150.6 195 64.1
Gohir.A01G214100 Gossypium hirsutum HOM05D005036 ORTHO05D005881 1.8e-34 150.2 203 66.5
ECA233G6008 Erigeron canadensis HOM05D005036 ORTHO05D005881 3.0e-34 149.4 193 66.3
Lsat_1_v5_gn_6_28400 Lactuca sativa HOM05D005036 ORTHO05D005881 3.0e-34 149.4 201 65.7
CsaV3_3G036210 Cucumis sativus L. HOM05D005036 ORTHO05D005881 3.9e-34 149.1 208 60.1
CiPaw.10G127400 Carya illinoinensis HOM05D005036 ORTHO05D005881 5.1e-34 148.7 199 66.8
AUR62026956 Chenopodium quinoa HOM05D005036 ORTHO05D005881 6.7e-34 148.3 200 65.0
Migut.L01721 Erythranthe guttata HOM05D005036 ORTHO05D005881 6.7e-34 148.3 205 64.4
GSVIVG01033679001 Vitis vinifera HOM05D005036 ORTHO05D005881 6.7e-34 148.3 199 66.3
FAN05G0966 Fragaria x ananassa HOM05D005036 ORTHO05D005881 8.8e-34 147.9 189 70.4
Phvul.007G151800 Phaseolus vulgaris HOM05D005036 ORTHO05D005881 8.8e-34 147.9 203 65.5
THA.LOC104823230 Tarenaya hassleriana HOM05D005036 ORTHO05D005881 8.8e-34 147.9 202 65.3
CSS0031942 Camellia sinensis var. sinensis HOM05D005036 ORTHO05D005881 1.1e-33 147.5 198 65.7
CSS0042807 Camellia sinensis var. sinensis HOM05D005036 ORTHO05D005881 1.1e-33 147.5 198 65.7
MELO3C009379.2 Cucumis melo HOM05D005036 ORTHO05D005881 1.1e-33 147.5 208 59.6
FAN02G0694 Fragaria x ananassa HOM05D000001 ORTHO05D000003 1.1e-33 147.5 189 70.4
Hma1.2p1_0547F.1_g176530 Hydrangea macrophylla HOM05D005036 ORTHO05D005881 1.5e-33 147.1 208 63.9
Sed0017772 Sechium edule HOM05D005036 ORTHO05D005881 1.5e-33 147.1 203 63.1
FvH4_6g16830 Fragaria vesca HOM05D005036 ORTHO05D005881 2.0e-33 146.7 189 70.4
FAN14G1811 Fragaria x ananassa HOM05D000001 ORTHO05D000003 2.0e-33 146.7 189 70.4
Manes.09G062100 Manihot esculenta HOM05D005036 ORTHO05D005881 2.0e-33 146.7 201 66.2
AL3G21130 Arabidopsis lyrata HOM05D005036 ORTHO05D005881 4.3e-33 145.6 207 57.5
VMungo0720G2361 Vigna mungo HOM05D005036 ORTHO05D005881 4.3e-33 145.6 203 64.5
Duzib093G0365 Durio zibethinus HOM05D005036 ORTHO05D005881 5.7e-33 145.2 205 63.4
PGR004G0584 Punica granatum HOM05D005036 ORTHO05D005881 5.7e-33 145.2 205 64.4
C03p43440 Brassica napus HOM05D005036 ORTHO05D005881 7.4e-33 144.8 207 42.5
Psat6g076000 Pisum sativum HOM05D005036 ORTHO05D005881 7.4e-33 144.8 202 64.4
RhsimUnG0004000 Rhododendron simsii HOM05D005036 ORTHO05D005881 7.4e-33 144.8 209 58.9
RhsimUnG0067400 Rhododendron simsii HOM05D005036 ORTHO05D005881 7.4e-33 144.8 209 58.9
ClCG10G019890 Citrullus lanatus HOM05D005036 ORTHO05D005881 9.7e-33 144.4 203 65.5
Potri.016G097900 Populus trichocarpa HOM05D005036 ORTHO05D005881 9.7e-33 144.4 198 66.7
unitig_578.g16379 Utricularia gibba HOM05D000468 ORTHO05D005881 9.7e-33 144.4 203 66.0
BolC3t16615H Brassica oleracea HOM05D005036 ORTHO05D005881 2.8e-32 142.9 207 42.0
Thhalv10021529m.g Eutrema salsugineum HOM05D005036 ORTHO05D005881 2.8e-32 142.9 205 56.6
Lalb_Chr02g0155461 Lupinus albus HOM05D005036 ORTHO05D005881 3.7e-32 142.5 196 64.8
CANSAT80G0983 Cannabis sativa HOM05D005036 ORTHO05D005881 4.8e-32 142.1 203 64.0
Duzib128G0734 Durio zibethinus HOM05D005036 ORTHO05D005881 4.8e-32 142.1 199 64.8
AT3G09890 Arabidopsis thaliana HOM05D005036 ORTHO05D005881 6.3e-32 141.7 202 57.9
Glyma.10G059800 Glycine max HOM05D005036 ORTHO05D005881 8.2e-32 141.4 200 66.5
Manes.08G013000 Manihot esculenta HOM05D005036 ORTHO05D005881 8.2e-32 141.4 199 65.8
Prupe.7G125700 Prunus persica HOM05D005036 ORTHO05D005881 8.2e-32 141.4 203 67.0
Sabra06G0095700 Salix brachista HOM05D005036 ORTHO05D005881 8.2e-32 141.4 198 66.2
CARHR084400 Cardamine hirsuta HOM05D005036 ORTHO05D005881 1.1e-31 141.0 203 57.1
Dinv37336 Davidia involucrata HOM05D005036 ORTHO05D005881 1.1e-31 141.0 140 67.1
Lj5g0011319 Lotus japonicus HOM05D005036 ORTHO05D005881 1.1e-31 141.0 200 61.5
HPP92_008393 Vanilla planifolia HOM05D005036 ORTHO05D005881 1.1e-31 141.0 207 51.2
Ca_08897_v3 Cicer arietinum L. HOM05D005036 ORTHO05D005881 1.8e-31 140.2 202 63.9
arahy.Tifrunner.gnm1.ann1.HJT5F9 Arachis hypogaea HOM05D005036 ORTHO05D005881 6.9e-31 138.3 196 64.8
arahy.Tifrunner.gnm1.ann1.LB0AEW Arachis hypogaea HOM05D005036 ORTHO05D005881 6.9e-31 138.3 196 64.8
Glyma.13G146500 Glycine max HOM05D005036 ORTHO05D005881 6.9e-31 138.3 190 66.3
BcaC01g04251 Brassica carinata HOM05D005036 ORTHO05D005881 9.1e-31 137.9 206 58.3
A03p35790 Brassica napus HOM05D005036 ORTHO05D005881 9.1e-31 137.9 199 39.7
BraA03t12751Z Brassica rapa HOM05D005036 ORTHO05D005881 9.1e-31 137.9 199 39.7
Medtr1g062770 Medicago truncatula HOM05D005036 ORTHO05D005881 9.1e-31 137.9 202 62.9
QL07p042294 Quercus lobata HOM05D005036 ORTHO05D005881 2.0e-30 136.7 229 58.1
PSO339G6683 Papaver somniferum HOM05D005036 ORTHO05D005881 2.6e-30 136.3 197 63.5
Sp3g08240 Schrenkiella parvula HOM05D005036 ORTHO05D005881 3.4e-30 136.0 204 48.0
COL.COLO4_26911 Corchorus olitorius HOM05D005036 ORTHO05D005881 1.3e-29 134.0 223 59.6
BcaB03g11582 Brassica carinata HOM05D005036 ORTHO05D005881 2.2e-29 133.3 198 57.1
TPR.G20997 Trifolium pratense HOM05D005036 ORTHO05D005881 2.2e-29 133.3 202 62.4
Potri.006G121500 Populus trichocarpa HOM05D005036 ORTHO05D005881 2.9e-29 132.9 189 66.7
Eucgr.A01621 Eucalyptus grandis HOM05D005036 ORTHO05D005881 5.0e-29 132.1 210 60.0
BcaC01g04252 Brassica carinata HOM05D005036 ORTHO05D005881 6.5e-29 131.7 195 40.5
Carub.0003s0899 Capsella rubella HOM05D005036 ORTHO05D005881 1.1e-28 131.0 202 56.9
Gorai.002G245700 Gossypium raimondii HOM05D005036 ORTHO05D005881 1.1e-28 131.0 181 68.5
Aa31LG3G2370 Aethionema arabicum HOM05D005036 ORTHO05D005881 1.4e-28 130.6 143 60.8
vmacro08795 Vaccinium macrocarpon HOM05D005036 ORTHO05D005881 1.6e-27 127.1 263 41.8
ATR0329G020 Amborella trichopoda HOM05D005036 ORTHO05D005881 6.1e-27 125.2 162 71.0
PSO063G2941 Papaver somniferum HOM05D005036 ORTHO05D005881 6.1e-27 125.2 141 66.0
CDE06G0353 Ceratophyllum demersum HOM05D005036 ORTHO05D005881 1.1e-25 120.9 206 58.3
DCAR_017666 Daucus carota HOM05D005036 ORTHO05D005881 2.6e-25 119.8 204 59.8
BcaC05g29716 Brassica carinata HOM05D005036 ORTHO05D005881 1.4e-23 114.0 202 37.6
DCAR_015009 Daucus carota HOM05D005036 ORTHO05D005881 1.8e-23 113.6 229 43.7
SEGI_13906 Sequoiadendron giganteum HOM05D005036 ORTHO05D005881 9.1e-23 111.3 210 56.2
DCAR_032184 Daucus carota HOM05D005036 ORTHO05D005881 4.5e-22 109.0 213 45.1
Sc02g0001400 Simmondsia chinensis HOM05D005036 ORTHO05D005881 2.2e-21 106.7 203 45.8
Lj3A990G72 Lonicera japonica HOM05D005036 ORTHO05D005881 2.9e-21 106.3 138 73.9
BcaC05g29714 Brassica carinata HOM05D005036 ORTHO05D005881 8.5e-21 104.8 202 39.1
BcaC05g29715 Brassica carinata HOM05D005036 ORTHO05D005881 8.5e-21 104.8 202 39.1
BcaC05g29712 Brassica carinata HOM05D005036 ORTHO05D005881 1.9e-20 103.6 202 39.1
Pp3c10_11210 Physcomitrium patens HOM05D005036 ORTHO05D005881 2.5e-20 103.2 187 56.1
BcaC05g29713 Brassica carinata HOM05D005036 ORTHO05D005881 5.5e-20 102.1 202 39.1
MBI13_g13833_MAGBIO Magnolia biondii HOM05D005036 ORTHO05D005881 1.6e-19 100.5 147 57.8
BcaC05g29502 Brassica carinata HOM05D005036 ORTHO05D005881 3.6e-19 99.4 155 60.0
BcaC05g29503 Brassica carinata HOM05D005036 ORTHO05D005881 3.6e-19 99.4 155 60.0
C05p58170 Brassica napus HOM05D005036 ORTHO05D005881 3.6e-19 99.4 155 60.0
BolC5t34473H Brassica oleracea HOM05D005036 ORTHO05D005881 3.6e-19 99.4 155 60.0
A05p39150 Brassica napus HOM05D005036 ORTHO05D005881 4.7e-19 99.0 162 61.1
BraA05t22704Z Brassica rapa HOM05D005036 ORTHO05D005881 4.7e-19 99.0 162 61.1
Os03g0145800 Oryza sativa ssp. japonica HOM05D005036 ORTHO05D005881 4.8e-16 89.0 145 47.6
Zm00001eb003690 Zea mays HOM05D005036 ORTHO05D005881 6.3e-16 88.6 197 52.3
Carub.0003s0923 Capsella rubella HOM05D005036 ORTHO05D005881 1.4e-15 87.4 141 63.8
THA.LOC104816666 Tarenaya hassleriana HOM05D005036 ORTHO05D005881 1.2e-14 84.3 83 49.4
MBI18_g12436_MAGBIO Magnolia biondii HOM05D005036 ORTHO05D005881 1.6e-14 84.0 148 62.8
MBI01_g04638_MAGBIO Magnolia biondii HOM05D005036 ORTHO05D005881 3.5e-14 82.8 144 65.3
MBI16_g11024_MAGBIO Magnolia biondii HOM05D005036 ORTHO05D005881 2.2e-13 80.1 83 72.3
Psat4g020880 Pisum sativum HOM05D005036 ORTHO05D005881 5.0e-13 79.0 80 73.8
CBR_g9117 Chara braunii HOM05D005036 ORTHO05D005881 6.5e-13 78.6 183 54.6
MBI15_g24508_MAGBIO Magnolia biondii HOM05D005036 ORTHO05D005881 1.1e-12 77.8 139 41.7
AagrBONN_evm.TU.Sc2ySwM_368.2717 Anthoceros agrestis HOM05D005036 ORTHO05D005881 1.9e-12 77.0 96 41.7
Solyc10g083870.2 Solanum lycopersicum HOM05D005036 ORTHO05D005881 5.5e-12 75.5 117 60.7
Psat6g104720 Pisum sativum HOM05D001839 ORTHO05D001867 2.7e-11 73.2 163 33.1
Ah.14g078370 Amaranthus hybridus HOM05D005036 ORTHO05D005881 4.7e-11 72.4 147 36.7
MCO14G431 Micromonas commoda HOM05D005036 ORTHO05D005881 1.3e-08 64.3 61 49.2
Cre06.g283300 Chlamydomonas reinhardtii HOM05D005036 ORTHO05D005881 7.0e-07 58.5 79 41.8
CBR_g37530 Chara braunii HOM05D002729 ORTHO05D003163 1.2e-06 57.8 86 40.7
SGA_v2.0_scaffold75G24776 Striga asiatica HOM05D005036 ORTHO05D005881 7.7e-06 55.1 117 36.8


User provided reference genes

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