Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen09g003160 Solanum pennellii HOM05D007509 ORTHO05D009525 1.8e-41 172.2 87 100.0
Solyc09g008335.1 Solanum lycopersicum HOM05D007509 ORTHO05D009525 5.8e-40 167.2 87 96.6
PGSC0003DMG400003867 Solanum tuberosum HOM05D007509 ORTHO05D009525 2.2e-39 165.2 87 97.7
Nitab4.5_0004476g0020 Nicotiana tabacum HOM05D007509 ORTHO05D009525 3.0e-36 154.8 87 93.1
Peaxi162Scf00722g00034 Petunia axillaris HOM05D007509 ORTHO05D009525 4.1e-30 134.4 100 74.0
TAR369G0282 Trochodendron aralioides HOM05D007509 ORTHO05D009525 4.0e-25 117.9 87 66.7
Dinv35801 Davidia involucrata HOM05D007509 ORTHO05D009525 5.8e-24 114.0 87 66.7
GSVIVG01033662001 Vitis vinifera HOM05D007509 ORTHO05D009525 9.2e-22 106.7 87 65.5
Gohir.A04G071200 Gossypium hirsutum HOM05D007509 ORTHO05D009525 2.7e-21 105.1 87 60.9
Gorai.009G414000 Gossypium raimondii HOM05D007509 ORTHO05D009525 2.7e-21 105.1 87 60.9
Gohir.D04G109900 Gossypium hirsutum HOM05D007509 ORTHO05D009525 3.5e-21 104.8 87 60.9
Actinidia32487 Actinidia chinensis HOM05D007509 ORTHO05D009525 1.0e-20 103.2 87 63.2
Cc06_g04400 Coffea canephora HOM05D007509 ORTHO05D009525 1.3e-20 102.8 87 62.1
Manes.07G043500 Manihot esculenta HOM05D007509 ORTHO05D009525 3.0e-20 101.7 87 62.1
Migut.L01714 Erythranthe guttata HOM05D007509 ORTHO05D009525 1.1e-19 99.8 89 65.2
Gohir.A09G145100 Gossypium hirsutum HOM05D007509 ORTHO05D009525 1.5e-19 99.4 87 57.5
Sc20g0005620 Simmondsia chinensis HOM05D006951 ORTHO05D008594 1.9e-19 99.0 87 57.5
Actinidia31324 Actinidia chinensis HOM05D007509 ORTHO05D009525 2.5e-19 98.6 88 62.5
Thecc.05G069500 Theobroma cacao HOM05D007509 ORTHO05D009525 2.5e-19 98.6 88 59.1
Cfa017635 Carpinus fangiana HOM05D006951 ORTHO05D008594 4.3e-19 97.8 86 60.5
CiPaw.09G170600 Carya illinoinensis HOM05D007509 ORTHO05D009525 9.5e-19 96.7 87 57.5
Gohir.D09G141225 Gossypium hirsutum HOM05D007509 ORTHO05D009525 1.6e-18 95.9 87 57.5
MD12G1108800 Malus domestica HOM05D007509 ORTHO05D009525 2.1e-18 95.5 87 57.5
CANSAT80G0537 Cannabis sativa HOM05D007509 ORTHO05D009525 2.8e-18 95.1 87 62.1
Duzib093G1616 Durio zibethinus HOM05D007509 ORTHO05D009525 2.8e-18 95.1 87 57.5
HanXRQChr14g0432941 Helianthus annuus HOM05D007509 ORTHO05D009525 2.8e-18 95.1 87 58.6
Gorai.006G162100 Gossypium raimondii HOM05D007509 ORTHO05D009525 4.7e-18 94.4 87 55.2
Nn2g13827 Nelumbo nucifera HOM05D007509 ORTHO05D009525 4.7e-18 94.4 86 59.3
QL07p042864 Quercus lobata HOM05D007509 ORTHO05D009525 1.8e-17 92.4 85 58.8
Glyma.10G054000 Glycine max HOM05D007509 ORTHO05D009525 3.1e-17 91.7 87 57.5
TWI53G0287 Tripterygium wilfordii HOM05D007509 ORTHO05D009525 3.1e-17 91.7 88 61.4
MELO3C009368.2 Cucumis melo HOM05D007509 ORTHO05D009525 5.2e-17 90.9 87 54.0
CsaV3_3G036080 Cucumis sativus L. HOM05D007509 ORTHO05D009525 5.2e-17 90.9 87 54.0
Lj5g0013352 Lotus japonicus HOM05D007509 ORTHO05D009525 8.9e-17 90.1 83 59.0
TWI74G1449 Tripterygium wilfordii HOM05D007509 ORTHO05D009525 8.9e-17 90.1 79 60.8
AUR62036098 Chenopodium quinoa HOM05D007509 ORTHO05D009525 1.2e-16 89.7 88 54.5
RcHm_v2.0_Chr3g0470531 Rosa chinensis HOM05D007509 ORTHO05D009525 1.2e-16 89.7 90 54.4
FAN05G4600 Fragaria x ananassa HOM05D007509 ORTHO05D009525 1.5e-16 89.4 90 57.8
FAN05G4982 Fragaria x ananassa HOM05D007509 ORTHO05D009525 1.5e-16 89.4 90 57.8
Atru.chr8.1768 Acer truncatum HOM05D007509 ORTHO05D009525 2.0e-16 89.0 83 55.4
Cpa.g.sc92.105 Carica papaya HOM05D007509 ORTHO05D009525 2.0e-16 89.0 87 54.0
PSO339G5046 Papaver somniferum HOM05D007509 ORTHO05D009525 2.0e-16 89.0 93 54.8
ECA246G0714 Erigeron canadensis HOM05D007509 ORTHO05D009525 3.4e-16 88.2 89 57.3
Potri.006G122600 Populus trichocarpa HOM05D007509 ORTHO05D009525 3.4e-16 88.2 87 56.3
FAN02G1612 Fragaria x ananassa HOM05D007509 ORTHO05D009525 4.4e-16 87.8 90 56.7
PGR004G0585 Punica granatum HOM05D007509 ORTHO05D009525 4.4e-16 87.8 84 53.6
Sed0001231 Sechium edule HOM05D007509 ORTHO05D009525 4.4e-16 87.8 88 55.7
Os02g0823600 Oryza sativa ssp. japonica HOM05D007509 ORTHO05D009525 5.8e-16 87.4 87 51.7
EL10Ac4g08317 Beta vulgaris HOM05D007509 ORTHO05D009525 7.6e-16 87.0 88 54.5
FAN09G1001 Fragaria x ananassa HOM05D007509 ORTHO05D009525 7.6e-16 87.0 77 63.6
TPR.G31192 Trifolium pratense HOM05D007509 ORTHO05D009525 7.6e-16 87.0 87 54.0
Aa31LG1G21690 Aethionema arabicum HOM05D007509 ORTHO05D009525 9.9e-16 86.7 83 53.0
Phvul.007G148600 Phaseolus vulgaris HOM05D007509 ORTHO05D009525 9.9e-16 86.7 71 59.2
FvH4_6g16590 Fragaria vesca HOM05D007509 ORTHO05D009525 1.3e-15 86.3 90 55.6
FAN14G0331 Fragaria x ananassa HOM05D007509 ORTHO05D009525 1.3e-15 86.3 90 55.6
Nn6g35255 Nelumbo nucifera HOM05D007509 ORTHO05D009525 1.3e-15 86.3 87 55.2
Medtr7g102320 Medicago truncatula HOM05D007509 ORTHO05D009525 1.7e-15 85.9 87 60.9
Prupe.7G127400 Prunus persica HOM05D007509 ORTHO05D009525 2.9e-15 85.1 87 54.0
Glyma.13G141100 Glycine max HOM05D007509 ORTHO05D009525 1.1e-14 83.2 87 51.7
Lalb_Chr02g0155761 Lupinus albus HOM05D007509 ORTHO05D009525 1.4e-14 82.8 87 54.0
AUR62019539 Chenopodium quinoa HOM05D007509 ORTHO05D009525 1.9e-14 82.4 71 57.7
Psat3g041640 Pisum sativum HOM05D007509 ORTHO05D009525 1.9e-14 82.4 87 57.5
TAR633G0343 Trochodendron aralioides HOM05D007509 ORTHO05D009525 1.9e-14 82.4 54 70.4
vmacro07305 Vaccinium macrocarpon HOM05D007509 ORTHO05D009525 3.2e-14 81.6 95 49.5
Zm00001eb190910 Zea mays HOM05D007509 ORTHO05D009525 3.2e-14 81.6 81 53.1
Aqoxy2G01711 Aquilegia oxysepala HOM05D007509 ORTHO05D009525 4.2e-14 81.3 92 50.0
arahy.Tifrunner.gnm1.ann1.KQD9UV Arachis hypogaea HOM05D007509 ORTHO05D009525 5.4e-14 80.9 88 53.4
arahy.Tifrunner.gnm1.ann1.M25UX0 Arachis hypogaea HOM05D007509 ORTHO05D009525 5.4e-14 80.9 88 54.5
arahy.Tifrunner.gnm1.ann1.Z0MF7F Arachis hypogaea HOM05D007509 ORTHO05D009525 5.4e-14 80.9 88 54.5
Rhsim03G0090000 Rhododendron simsii HOM05D007509 ORTHO05D009525 5.4e-14 80.9 88 55.7
ATR0723G032 Amborella trichopoda HOM05D007509 ORTHO05D009525 9.2e-14 80.1 56 64.3
Ciclev10013275m.g Citrus clementina HOM05D007509 ORTHO05D009525 1.2e-13 79.7 62 61.3
CARHR209880 Cardamine hirsuta HOM05D007509 ORTHO05D009525 3.5e-13 78.2 90 47.8
Medtr1g063000 Medicago truncatula HOM05D007509 ORTHO05D009525 3.5e-13 78.2 87 54.0
Psat6g074800 Pisum sativum HOM05D007509 ORTHO05D009525 4.6e-13 77.8 71 57.7
Sp6g39270 Schrenkiella parvula HOM05D007509 ORTHO05D009525 6.0e-13 77.4 90 51.1
THA.LOC104816357 Tarenaya hassleriana HOM05D007509 ORTHO05D009525 7.8e-13 77.0 87 54.0
Carub.0006s0228 Capsella rubella HOM05D007509 ORTHO05D009525 1.0e-12 76.6 90 48.9
TPR.G32808 Trifolium pratense HOM05D001446 ORTHO05D001360 2.3e-12 75.5 81 50.6
CDE02G4326 Ceratophyllum demersum HOM05D007509 ORTHO05D009525 3.9e-12 74.7 87 48.3
Thhalv10015146m.g Eutrema salsugineum HOM05D007509 ORTHO05D009525 5.1e-12 74.3 91 51.6
BcaC06g32063 Brassica carinata HOM05D007509 ORTHO05D009525 1.1e-11 73.2 85 51.8
C02p01090 Brassica napus HOM05D007509 ORTHO05D009525 1.1e-11 73.2 51 66.7
BolC2t06099H Brassica oleracea HOM05D007509 ORTHO05D009525 1.1e-11 73.2 51 66.7
BraA02t04762Z Brassica rapa HOM05D007509 ORTHO05D009525 1.1e-11 73.2 51 66.7
AT5G03460 Arabidopsis thaliana HOM05D007509 ORTHO05D009525 1.5e-11 72.8 90 46.7
BolC9t60072H Brassica oleracea HOM05D007509 ORTHO05D009525 1.9e-11 72.4 85 52.9
C09p73360 Brassica napus HOM05D007509 ORTHO05D009525 2.5e-11 72.0 85 50.6
CDE08G0025 Ceratophyllum demersum HOM05D007509 ORTHO05D009525 3.3e-11 71.6 87 46.0
AL6G12840 Arabidopsis lyrata HOM05D007509 ORTHO05D009525 5.6e-11 70.9 90 45.6
unitig_0.g681 Utricularia gibba HOM05D007509 ORTHO05D009525 1.3e-10 69.7 46 73.9
A10p32560 Brassica napus HOM05D007509 ORTHO05D009525 3.6e-10 68.2 87 51.7
BraA10t45291Z Brassica rapa HOM05D007509 ORTHO05D009525 3.6e-10 68.2 87 51.7
DCAR_020813 Daucus carota HOM05D007509 ORTHO05D009525 6.2e-10 67.4 61 57.4
Aa31LG3G2340 Aethionema arabicum HOM05D007509 ORTHO05D009525 2.0e-08 62.4 48 62.5
Sed0008520 Sechium edule HOM05D007509 ORTHO05D009525 2.6e-08 62.0 70 47.1
SMO147G0160 Selaginella moellendorffii HOM05D007509 ORTHO05D009525 2.9e-07 58.5 55 54.5
CiPaw.03G172600 Carya illinoinensis HOM05D007509 ORTHO05D009525 6.4e-07 57.4 84 47.6


User provided reference genes

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