Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen09g003130 Solanum pennellii HOM05D004402 ORTHO05D005314 1.4e-298 1028.9 514 100.0
Solyc09g008310.3 Solanum lycopersicum HOM05D004402 ORTHO05D005314 9.8e-297 1022.7 514 99.2
Nitab4.5_0000578g0080 Nicotiana tabacum HOM05D004402 ORTHO05D005314 2.8e-275 951.4 514 92.0
Sopen10g033410 Solanum pennellii HOM05D004402 ORTHO05D005314 5.8e-249 864.0 514 83.3
Peaxi162Scf00311g01314 Petunia axillaris HOM05D004402 ORTHO05D005314 4.2e-247 857.8 511 83.2
CAN.G488.15 Capsicum annuum HOM05D004402 ORTHO05D005314 4.8e-243 844.3 514 81.3
Peaxi162Scf00722g00015 Petunia axillaris HOM05D004402 ORTHO05D005314 1.1e-242 843.2 514 83.7
Nitab4.5_0010955g0010 Nicotiana tabacum HOM05D004402 ORTHO05D005314 1.0e-237 826.6 528 80.9
Solyc10g083960.2 Solanum lycopersicum HOM05D004402 ORTHO05D005314 8.7e-237 823.5 514 80.2
CSS0044786 Camellia sinensis var. sinensis HOM05D004402 ORTHO05D005314 4.8e-235 817.8 514 78.2
Dinv35795 Davidia involucrata HOM05D004402 ORTHO05D005314 4.5e-233 811.2 514 77.4
Cc06_g04350 Coffea canephora HOM05D004402 ORTHO05D005314 1.0e-229 800.0 514 76.1
MSTRG.10328 Avicennia marina HOM05D004402 ORTHO05D005314 2.2e-224 782.3 514 75.9
QL07p043056 Quercus lobata HOM05D004402 ORTHO05D005314 5.5e-223 777.7 511 74.4
Oeu041487.1 Olea europaea HOM05D004402 ORTHO05D005314 1.2e-222 776.5 514 75.7
RcHm_v2.0_Chr3g0470441 Rosa chinensis HOM05D004402 ORTHO05D005314 1.6e-222 776.2 513 74.5
Nn6g35264 Nelumbo nucifera HOM05D004402 ORTHO05D005314 6.1e-222 774.2 512 74.8
GSVIVG01033653001 Vitis vinifera HOM05D004402 ORTHO05D005314 3.0e-221 771.9 512 74.6
FvH4_6g16530 Fragaria vesca HOM05D004402 ORTHO05D005314 3.9e-221 771.5 512 74.2
Nitab4.5_0000063g0160 Nicotiana tabacum HOM05D004402 ORTHO05D005314 4.4e-220 768.1 514 77.0
vmacro01673 Vaccinium macrocarpon HOM05D004402 ORTHO05D005314 1.7e-219 766.1 548 70.6
Duzib093G2129 Durio zibethinus HOM05D004402 ORTHO05D005314 1.1e-218 763.5 514 73.9
TAR633G1938 Trochodendron aralioides HOM05D004402 ORTHO05D005314 1.4e-218 763.1 512 74.6
Thecc.05G068900 Theobroma cacao HOM05D004402 ORTHO05D005314 1.8e-218 762.7 514 74.1
Gorai.009G414300 Gossypium raimondii HOM05D004402 ORTHO05D005314 2.4e-218 762.3 514 73.5
Atru.chr8.1786 Acer truncatum HOM05D004402 ORTHO05D005314 3.1e-218 761.9 511 73.2
Cfa017631 Carpinus fangiana HOM05D004402 ORTHO05D005314 3.1e-218 761.9 514 73.2
Nitab4.5_0000814g0100 Nicotiana tabacum HOM05D004402 ORTHO05D005314 3.1e-218 761.9 514 76.7
Prupe.7G128300 Prunus persica HOM05D004402 ORTHO05D005314 3.1e-218 761.9 512 73.6
Ciclev10011527m.g Citrus clementina HOM05D004402 ORTHO05D005314 5.3e-218 761.1 514 73.9
Potri.006G123000 Populus trichocarpa HOM05D004402 ORTHO05D005314 1.5e-217 759.6 514 75.1
Gohir.D04G110200 Gossypium hirsutum HOM05D004402 ORTHO05D005314 2.6e-217 758.8 514 73.3
Sabra06G0097300 Salix brachista HOM05D004402 ORTHO05D005314 1.7e-216 756.1 514 73.9
CiPaw.10G128900 Carya illinoinensis HOM05D004402 ORTHO05D005314 6.5e-216 754.2 511 73.4
Migut.L01711 Erythranthe guttata HOM05D004402 ORTHO05D005314 1.4e-215 753.1 514 73.3
SalBow2G1223 Salvia bowleyana HOM05D004402 ORTHO05D005314 1.9e-215 752.7 504 73.8
CAN.G900.21 Capsicum annuum HOM05D004402 ORTHO05D005314 4.2e-215 751.5 404 92.6
SalBow3G3127 Salvia bowleyana HOM05D004402 ORTHO05D005314 4.2e-215 751.5 504 74.0
COL.COLO4_09330 Corchorus olitorius HOM05D004402 ORTHO05D005314 4.7e-214 748.0 511 73.2
Glyma.19G184800 Glycine max HOM05D004402 ORTHO05D005314 6.1e-214 747.7 514 71.6
CANSAT80G1177 Cannabis sativa HOM05D004402 ORTHO05D005314 8.0e-214 747.3 513 73.3
CsaV3_3G036050 Cucumis sativus L. HOM05D004402 ORTHO05D005314 1.4e-213 746.5 510 71.6
TWI74G0242 Tripterygium wilfordii HOM05D004402 ORTHO05D005314 1.4e-213 746.5 516 72.3
Glyma.03G184200 Glycine max HOM05D004402 ORTHO05D005314 1.8e-213 746.1 509 71.9
Sc20g0005590 Simmondsia chinensis HOM05D004402 ORTHO05D005314 2.3e-213 745.7 514 70.2
ClCG10G020050 Citrullus lanatus HOM05D004402 ORTHO05D005314 3.0e-213 745.3 512 71.7
Lalb_Chr25g0288951 Lupinus albus HOM05D004402 ORTHO05D005314 3.0e-213 745.3 514 71.8
Lj1g0000599 Lotus japonicus HOM05D004402 ORTHO05D005314 6.7e-213 744.2 514 71.2
Lalb_Chr20g0112571 Lupinus albus HOM05D004402 ORTHO05D005314 2.0e-212 742.7 514 71.0
Phvul.001G179700 Phaseolus vulgaris HOM05D004402 ORTHO05D005314 7.4e-212 740.7 514 71.2
DCAR_017670 Daucus carota HOM05D004402 ORTHO05D005314 9.7e-212 740.3 508 72.6
Nn2g13812 Nelumbo nucifera HOM05D004402 ORTHO05D005314 9.7e-212 740.3 513 71.9
TAR636G0918 Trochodendron aralioides HOM05D004402 ORTHO05D005314 2.2e-211 739.2 489 75.5
Lj2C120T4 Lonicera japonica HOM05D004402 ORTHO05D005314 2.8e-211 738.8 474 78.3
THA.LOC104823232 Tarenaya hassleriana HOM05D004402 ORTHO05D005314 1.6e-209 733.0 515 71.8
Sed0020729 Sechium edule HOM05D004402 ORTHO05D005314 4.5e-209 731.5 512 70.1
vmacro07301 Vaccinium macrocarpon HOM05D004402 ORTHO05D005314 1.0e-208 730.3 601 64.1
DCAR_015004 Daucus carota HOM05D004402 ORTHO05D005314 6.5e-208 727.6 515 72.4
HanXRQChr14g0454821 Helianthus annuus HOM05D004402 ORTHO05D005314 1.1e-207 726.9 507 71.2
FAN09G4748 Fragaria x ananassa HOM05D004402 ORTHO05D005314 1.5e-207 726.5 512 71.5
Eucgr.K02925 Eucalyptus grandis HOM05D004402 ORTHO05D005314 1.9e-207 726.1 514 70.4
Ca_08910_v3 Cicer arietinum L. HOM05D004402 ORTHO05D005314 4.2e-207 724.9 514 70.4
FAN14G0478 Fragaria x ananassa HOM05D004402 ORTHO05D005314 2.1e-206 722.6 512 70.9
BcaB01g05821 Brassica carinata HOM05D004402 ORTHO05D005314 2.7e-206 722.2 509 71.5
BcaB01g05839 Brassica carinata HOM05D004402 ORTHO05D005314 2.7e-206 722.2 509 72.1
PGR004G2373 Punica granatum HOM05D004402 ORTHO05D005314 4.7e-206 721.5 508 71.5
PSO801G0054 Papaver somniferum HOM05D004402 ORTHO05D005314 8.0e-206 720.7 512 69.7
Aa31LG1G21720 Aethionema arabicum HOM05D004402 ORTHO05D005314 1.0e-205 720.3 509 71.1
TWI77G0706 Tripterygium wilfordii HOM05D004402 ORTHO05D005314 1.0e-205 720.3 512 69.7
BolC3t12705H Brassica oleracea HOM05D004402 ORTHO05D005314 2.3e-205 719.2 509 71.9
arahy.Tifrunner.gnm1.ann1.ZWC5L9 Arachis hypogaea HOM05D004402 ORTHO05D005314 3.0e-205 718.8 552 67.0
MBI17_g34762_MAGBIO Magnolia biondii HOM05D004402 ORTHO05D005314 3.0e-205 718.8 527 67.9
arahy.Tifrunner.gnm1.ann1.DYK8MJ Arachis hypogaea HOM05D004402 ORTHO05D005314 1.2e-204 716.8 552 66.8
C03p01510 Brassica napus HOM05D004402 ORTHO05D005314 1.2e-204 716.8 509 71.7
A03p01170 Brassica napus HOM05D004402 ORTHO05D005314 1.5e-204 716.5 509 71.3
BolC2t06097H Brassica oleracea HOM05D004402 ORTHO05D005314 1.5e-204 716.5 510 70.6
BraA10t45293Z Brassica rapa HOM05D004402 ORTHO05D005314 1.3e-203 713.4 509 70.9
Manes.12G084800 Manihot esculenta HOM05D004402 ORTHO05D005314 1.3e-203 713.4 515 69.5
Medtr7g102180 Medicago truncatula HOM05D004402 ORTHO05D005314 1.3e-203 713.4 514 69.1
A10p32580 Brassica napus HOM05D004402 ORTHO05D005314 2.8e-203 712.2 509 70.7
C02p01070 Brassica napus HOM05D004402 ORTHO05D005314 2.8e-203 712.2 510 70.2
BcaC06g32061 Brassica carinata HOM05D004402 ORTHO05D005314 3.7e-203 711.8 510 70.8
BolC9t60074H Brassica oleracea HOM05D004402 ORTHO05D005314 3.7e-203 711.8 510 70.8
Dinv37323 Davidia involucrata HOM05D004402 ORTHO05D005314 3.7e-203 711.8 452 78.5
PSO339G5499 Papaver somniferum HOM05D004402 ORTHO05D005314 4.8e-203 711.4 513 69.2
BraA02t04760Z Brassica rapa HOM05D004402 ORTHO05D005314 8.3e-203 710.7 512 70.3
AL6G12780 Arabidopsis lyrata HOM05D004402 ORTHO05D005314 1.4e-202 709.9 517 70.0
ATR0910G004 Amborella trichopoda HOM05D004402 ORTHO05D005314 1.8e-202 709.5 515 68.3
BcaC06g32058 Brassica carinata HOM05D004402 ORTHO05D005314 1.8e-202 709.5 509 70.5
Carub.0006s0224 Capsella rubella HOM05D004402 ORTHO05D005314 1.8e-202 709.5 504 70.8
Sp6g39310 Schrenkiella parvula HOM05D004402 ORTHO05D005314 2.4e-202 709.1 505 71.5
Thhalv10013303m.g Eutrema salsugineum HOM05D004402 ORTHO05D005314 3.1e-202 708.8 522 69.0
C09p73380 Brassica napus HOM05D004402 ORTHO05D005314 4.1e-202 708.4 510 70.6
THA.LOC104826918 Tarenaya hassleriana HOM05D004402 ORTHO05D005314 7.0e-202 707.6 516 70.3
CARHR209910 Cardamine hirsuta HOM05D004402 ORTHO05D005314 1.2e-201 706.8 514 69.5
AUR62026916 Chenopodium quinoa HOM05D004402 ORTHO05D005314 1.6e-201 706.4 511 68.7
MD12G1109700 Malus domestica HOM05D004402 ORTHO05D005314 5.9e-201 704.5 479 72.2
AT5G03430 Arabidopsis thaliana HOM05D004402 ORTHO05D005314 2.9e-200 702.2 517 69.4
COL.COLO4_26944 Corchorus olitorius HOM05D004402 ORTHO05D005314 8.5e-200 700.7 482 72.2
ECA238G0572 Erigeron canadensis HOM05D004402 ORTHO05D005314 7.2e-199 697.6 507 68.8
BraA03t09499Z Brassica rapa HOM05D004402 ORTHO05D005314 1.2e-198 696.8 498 71.1
MELO3C009365.2 Cucumis melo HOM05D004402 ORTHO05D005314 1.2e-198 696.8 512 68.2
Oeu005028.1 Olea europaea HOM05D004402 ORTHO05D005314 4.0e-197 691.8 528 68.4
MD04G1091700 Malus domestica HOM05D004402 ORTHO05D005314 8.8e-197 690.6 476 71.4
CDE10G0806 Ceratophyllum demersum HOM05D004402 ORTHO05D005314 4.4e-196 688.3 513 67.4
FAN05G2520 Fragaria x ananassa HOM05D004402 ORTHO05D005314 5.7e-196 688.0 512 68.8
FAN05G1679 Fragaria x ananassa HOM05D004402 ORTHO05D005314 7.5e-196 687.6 512 68.8
Rhsim03G0090600 Rhododendron simsii HOM05D004402 ORTHO05D005314 1.7e-195 686.4 567 64.2
SGA_v2.0_scaffold75G24834 Striga asiatica HOM05D004402 ORTHO05D005314 2.0e-193 679.5 515 68.3
EL10Ac7g16646 Beta vulgaris HOM05D004402 ORTHO05D005314 2.9e-192 675.6 584 60.3
AUR62042064 Chenopodium quinoa HOM05D004402 ORTHO05D005314 1.9e-191 672.9 511 66.5
Lsat_1_v5_gn_1_51600 Lactuca sativa HOM05D004402 ORTHO05D005314 4.2e-191 671.8 500 68.2
BcaB05g21840 Brassica carinata HOM05D004402 ORTHO05D005314 1.6e-190 669.8 504 66.5
FAN02G2572 Fragaria x ananassa HOM05D004402 ORTHO05D005314 3.6e-190 668.7 538 65.1
Actinidia28911 Actinidia chinensis HOM05D004402 ORTHO05D005314 2.0e-188 662.9 489 68.5
HPP92_025807 Vanilla planifolia HOM05D004402 ORTHO05D005314 3.4e-188 662.1 513 66.5
VMungo1383G0058 Vigna mungo HOM05D004402 ORTHO05D005314 9.8e-188 660.6 465 70.8
ECA248G3038 Erigeron canadensis HOM05D004402 ORTHO05D005314 6.3e-187 657.9 500 66.6
Ah.08g211550 Amaranthus hybridus HOM05D004402 ORTHO05D005314 4.1e-186 655.2 511 64.4
Zm00001eb333440 Zea mays HOM05D004402 ORTHO05D005314 9.2e-186 654.1 515 64.5
Migut.J00646 Erythranthe guttata HOM05D004402 ORTHO05D005314 6.8e-181 637.9 404 77.2
Psat3g041880 Pisum sativum HOM05D004402 ORTHO05D005314 2.6e-180 636.0 452 70.4
BcaC03g13007 Brassica carinata HOM05D004402 ORTHO05D005314 4.9e-179 631.7 456 69.3
unitig_60.g25815 Utricularia gibba HOM05D004402 ORTHO05D005314 1.6e-177 626.7 516 62.6
AagrBONN_evm.TU.Sc2ySwM_362.2690 Anthoceros agrestis HOM05D004402 ORTHO05D005314 2.4e-154 549.7 527 53.3
Hund20335 Selenicereus undatus HOM05D004402 ORTHO05D005314 5.4e-154 548.5 664 47.9
Mapoly0054s0056 Marchantia polymorpha HOM05D004402 ORTHO05D005314 7.8e-153 544.7 541 52.7
Haze_20522 Corylus avellana HOM05D004402 ORTHO05D005314 4.3e-151 538.9 492 58.9
SHI12325 Sapria himalayana HOM05D004402 ORTHO05D005314 7.6e-140 501.5 457 58.2
SMO146G0130 Selaginella moellendorffii HOM05D004402 ORTHO05D005314 2.2e-139 500.0 421 60.1
SGA_v2.0_scaffold224G42938 Striga asiatica HOM05D004402 ORTHO05D005314 5.6e-135 485.3 514 53.1
PGSC0003DMG401028184 Solanum tuberosum HOM05D004402 ORTHO05D005314 5.8e-132 475.3 273 85.0
TPR.G32815 Trifolium pratense HOM05D004402 ORTHO05D005314 7.1e-122 441.8 342 65.5
Gohir.A04G071600 Gossypium hirsutum HOM05D004402 ORTHO05D005314 3.0e-112 409.8 275 76.4
Aqoxy3G01670 Aquilegia oxysepala HOM05D004402 ORTHO05D005314 3.6e-105 386.3 279 69.9
SEGI_14784 Sequoiadendron giganteum HOM05D004402 ORTHO05D005314 4.7e-89 332.8 243 70.4
Gohir.A04G071700 Gossypium hirsutum HOM05D004402 ORTHO05D005314 1.9e-82 310.8 212 68.9
Zm00001eb128460 Zea mays HOM05D004402 ORTHO05D005314 2.5e-82 310.5 242 61.6
Hma1.2p1_0828F.1_g225130 Hydrangea macrophylla HOM05D004402 ORTHO05D005314 9.8e-79 298.5 237 65.0
Zm00001eb127890 Zea mays HOM05D004402 ORTHO05D005314 2.2e-78 297.4 263 58.9
HanXRQChr07g0194721 Helianthus annuus HOM05D004402 ORTHO05D005314 3.0e-72 276.9 508 39.0
Cre13.g592500 Chlamydomonas reinhardtii HOM05D004402 ORTHO05D005314 8.9e-64 248.8 579 30.9
PGSC0003DMG400003892 Solanum tuberosum HOM05D004402 ORTHO05D005314 7.3e-58 229.2 114 97.4
PRCOL_00001257 Prasinoderma coloniale HOM05D004402 ORTHO05D005314 9.8e-55 218.8 393 35.1
Os01g0259600 Oryza sativa ssp. japonica HOM05D004402 ORTHO05D005314 2.1e-41 174.5 137 62.0
TAR636G0069 Trochodendron aralioides HOM05D004402 ORTHO05D005314 3.4e-39 167.2 189 49.7
VMungo1383G2351 Vigna mungo HOM05D004402 ORTHO05D005314 1.6e-36 158.3 110 73.6
TAR636G0130 Trochodendron aralioides HOM05D004402 ORTHO05D005314 5.1e-35 153.3 121 66.9
PRCOL_00006213 Prasinoderma coloniale HOM05D004402 ORTHO05D005314 6.2e-33 146.4 235 39.1
SalBow3G0082 Salvia bowleyana HOM05D004402 ORTHO05D005314 9.0e-32 142.5 251 39.4
SalBow3G2408 Salvia bowleyana HOM05D004402 ORTHO05D005314 2.6e-31 141.0 251 39.0
TPR.G11110 Trifolium pratense HOM05D004402 ORTHO05D005314 1.0e-27 129.0 67 88.1
CAN.G900.20 Capsicum annuum HOM05D004402 ORTHO05D005314 1.7e-22 111.7 76 73.7
SalBow3G1023 Salvia bowleyana HOM05D004402 ORTHO05D005314 3.8e-22 110.5 63 84.1
Cfa022272 Carpinus fangiana HOM05D004402 ORTHO05D005314 1.3e-17 95.5 164 28.7
HanXRQChr13g0396631 Helianthus annuus HOM05D004402 ORTHO05D005314 1.3e-17 95.5 73 67.1
CBR_g4033 Chara braunii HOM05D004402 ORTHO05D005314 4.2e-13 80.5 113 43.4
Cre01.g026650 Chlamydomonas reinhardtii HOM05D004402 ORTHO05D007141 7.9e-12 76.3 241 27.8
Cfa025539 Carpinus fangiana HOM05D003439 ORTHO05D004062 1.5e-10 72.0 287 27.5
TAR636G1582 Trochodendron aralioides HOM05D004402 ORTHO05D005314 1.4e-08 65.5 36 86.1
Lsat_1_v5_gn_6_17200 Lactuca sativa HOM05D004402 ORTHO05D005314 6.9e-08 63.2 86 43.0
CBR_g4032 Chara braunii HOM05D004402 ORTHO05D043925 4.5e-07 60.5 36 75.0
ECA233G2956 Erigeron canadensis HOM05D000002 ORTHO05D000001 4.5e-07 60.5 109 40.4
SEGI_37303 Sequoiadendron giganteum HOM05D004402 ORTHO05D005314 1.7e-06 58.5 75 38.7


User provided reference genes

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