Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen09g003080 Solanum pennellii HOM05D007148 ORTHO05D009047 4.9e-247 857.4 460 100.0
Solyc09g008260.3 Solanum lycopersicum HOM05D007148 ORTHO05D009047 5.8e-232 807.4 460 95.2
Nitab4.5_0000578g0130 Nicotiana tabacum HOM05D007148 ORTHO05D009047 3.1e-124 449.5 394 67.3
PGSC0003DMG401003864 Solanum tuberosum HOM05D007148 ORTHO05D009047 2.9e-122 443.0 283 86.9
Nitab4.5_0008624g0020 Nicotiana tabacum HOM05D007148 ORTHO05D009047 1.0e-111 407.9 363 68.0
CAN.G900.26 Capsicum annuum HOM05D007148 ORTHO05D009047 3.3e-110 402.9 313 73.2
Peaxi162Scf00847g00313 Petunia axillaris HOM05D007148 ORTHO05D009047 8.4e-106 388.3 512 52.9
GSVIVG01033649001 Vitis vinifera HOM05D007148 ORTHO05D009047 9.7e-86 321.6 455 46.4
Dinv35791 Davidia involucrata HOM05D007148 ORTHO05D009047 3.4e-83 313.2 498 42.2
Gohir.A01G213200 Gossypium hirsutum HOM05D007148 ORTHO05D009047 2.7e-80 303.5 534 40.8
Oeu053686.1 Olea europaea HOM05D007148 ORTHO05D009047 2.3e-79 300.4 493 42.0
Cc06_g04310 Coffea canephora HOM05D007148 ORTHO05D009047 1.9e-78 297.4 498 42.6
HanXRQChr13g0400991 Helianthus annuus HOM05D007148 ORTHO05D009047 1.9e-78 297.4 457 42.2
Gorai.002G246600 Gossypium raimondii HOM05D007148 ORTHO05D009047 9.7e-78 295.0 536 39.6
DCAR_014515 Daucus carota HOM05D007148 ORTHO05D009047 5.3e-76 289.3 474 41.8
TAR633G2546 Trochodendron aralioides HOM05D007148 ORTHO05D009047 5.9e-75 285.8 462 42.0
Gohir.D01G204200 Gossypium hirsutum HOM05D007148 ORTHO05D009047 7.7e-75 285.4 541 38.6
CiPaw.09G171600 Carya illinoinensis HOM05D007148 ORTHO05D009047 1.7e-74 284.3 630 37.1
Hund20337 Selenicereus undatus HOM05D007148 ORTHO05D009047 2.9e-74 283.5 500 40.2
Rhsim04G0144100 Rhododendron simsii HOM05D007148 ORTHO05D009047 6.5e-74 282.3 467 43.9
Prupe.7G128700 Prunus persica HOM05D007148 ORTHO05D009047 5.5e-73 279.3 560 36.4
Lsat_1_v5_gn_6_24961 Lactuca sativa HOM05D007148 ORTHO05D009047 3.6e-72 276.6 462 39.2
Actinidia31326 Actinidia chinensis HOM05D007148 ORTHO05D009047 2.0e-70 270.8 493 41.2
SalBow3G0477 Salvia bowleyana HOM05D007148 ORTHO05D009047 1.7e-69 267.7 476 40.5
Duzib093G0361 Durio zibethinus HOM05D007148 ORTHO05D009047 1.8e-68 264.2 539 37.3
Ciclev10012080m.g Citrus clementina HOM05D007148 ORTHO05D009047 1.5e-62 244.6 415 42.4
Thecc.05G068300 Theobroma cacao HOM05D007148 ORTHO05D009047 5.7e-62 242.7 556 35.6
arahy.Tifrunner.gnm1.ann1.J3RTVJ Arachis hypogaea HOM05D007148 ORTHO05D009047 9.7e-62 241.9 547 35.5
Phvul.007G147800 Phaseolus vulgaris HOM05D007148 ORTHO05D009047 4.8e-61 239.6 638 33.5
CsaV3_6G039960 Cucumis sativus L. HOM05D007148 ORTHO05D009047 6.3e-61 239.2 680 32.2
Ah.08g211560 Amaranthus hybridus HOM05D007148 ORTHO05D009047 3.1e-60 236.9 454 37.4
Glyma.10G054600 Glycine max HOM05D007148 ORTHO05D009047 5.3e-60 236.1 590 32.4
FAN14G3336 Fragaria x ananassa HOM05D007148 ORTHO05D009047 9.1e-60 235.3 588 32.3
FAN05G5619 Fragaria x ananassa HOM05D007148 ORTHO05D009047 2.2e-58 230.7 587 32.5
ECA233G5868 Erigeron canadensis HOM05D007148 ORTHO05D009047 3.8e-58 229.9 492 35.6
RcHm_v2.0_Chr3g0470391 Rosa chinensis HOM05D007148 ORTHO05D009047 3.8e-58 229.9 611 32.2
FAN02G0401 Fragaria x ananassa HOM05D007148 ORTHO05D009047 5.0e-58 229.6 611 31.6
Manes.08G011400 Manihot esculenta HOM05D007148 ORTHO05D009047 1.1e-57 228.4 584 33.6
FAN09G1323 Fragaria x ananassa HOM05D007148 ORTHO05D009047 1.5e-57 228.0 584 31.7
MD04G1092300 Malus domestica HOM05D007148 ORTHO05D009047 1.5e-57 228.0 592 30.7
PGR004G2178 Punica granatum HOM05D007148 ORTHO05D009047 2.5e-57 227.3 559 34.2
Lalb_Chr02g0155781 Lupinus albus HOM05D007148 ORTHO05D009047 5.5e-57 226.1 550 32.4
arahy.Tifrunner.gnm1.ann1.IRYX6E Arachis hypogaea HOM05D007148 ORTHO05D009047 7.2e-57 225.7 591 33.2
Hma1.2p1_2076F.1_g313310 Hydrangea macrophylla HOM05D007148 ORTHO05D009047 1.8e-55 221.1 279 47.3
CANSAT80G2677 Cannabis sativa HOM05D007148 ORTHO05D009047 2.3e-55 220.7 641 30.4
Ca_11512_v3 Cicer arietinum L. HOM05D000261 ORTHO05D009047 2.3e-55 220.7 545 32.1
FAN05G4699 Fragaria x ananassa HOM05D007148 ORTHO05D009047 3.0e-55 220.3 586 32.3
PSO801G0196 Papaver somniferum HOM05D007148 ORTHO05D009047 3.0e-55 220.3 543 31.5
MELO3C024473.2 Cucumis melo HOM05D007148 ORTHO05D009047 1.2e-54 218.4 671 30.8
PSO339G4391 Papaver somniferum HOM05D007148 ORTHO05D009047 3.3e-54 216.9 542 31.7
ClCG04G009380 Citrullus lanatus HOM05D007148 ORTHO05D009047 5.7e-54 216.1 715 29.9
Potri.006G123300 Populus trichocarpa HOM05D007148 ORTHO05D009047 6.3e-53 212.6 602 32.1
unitig_8.g4717 Utricularia gibba HOM05D006951 ORTHO05D008594 8.2e-53 212.2 401 36.9
Sed0015836 Sechium edule HOM05D007148 ORTHO05D009047 1.4e-52 211.5 670 29.0
MD12G1110100 Malus domestica HOM05D007148 ORTHO05D009047 5.3e-52 209.5 598 30.9
Lj5g0011331 Lotus japonicus HOM05D007148 ORTHO05D009047 1.6e-51 208.0 604 30.6
Sabra06G0097500 Salix brachista HOM05D001037 ORTHO05D000888 3.5e-51 206.8 588 30.6
CDE09G0108 Ceratophyllum demersum HOM05D007534 ORTHO05D009540 1.0e-50 205.3 421 35.4
VMungo0720G1794 Vigna mungo HOM05D007148 ORTHO05D009047 2.9e-50 203.8 650 28.8
QL07p043079 Quercus lobata HOM05D007148 ORTHO05D009047 5.0e-50 203.0 647 31.2
Nn6g35277 Nelumbo nucifera HOM05D007148 ORTHO05D009047 1.5e-49 201.4 424 35.4
Atru.chr8.1789 Acer truncatum HOM05D007148 ORTHO05D009047 1.0e-47 195.3 331 39.9
Eucgr.A01669 Eucalyptus grandis HOM05D007148 ORTHO05D009047 2.3e-47 194.1 552 31.2
Psat6g073400 Pisum sativum HOM05D007148 ORTHO05D009047 5.2e-47 193.0 565 29.9
ATR1126G054 Amborella trichopoda HOM05D007148 ORTHO05D009047 2.6e-46 190.7 424 34.9
TPR.G11276 Trifolium pratense HOM05D007148 ORTHO05D009047 5.7e-46 189.5 579 29.0
Haze_20525 Corylus avellana HOM05D007534 ORTHO05D009540 1.3e-45 188.3 688 28.6
Medtr1g063080 Medicago truncatula HOM05D007148 ORTHO05D009047 1.3e-45 188.3 596 30.2
Glyma.13G141800 Glycine max HOM05D007148 ORTHO05D009047 1.4e-44 184.9 600 28.7
Thhalv10013433m.g Eutrema salsugineum HOM05D007148 ORTHO05D009047 9.1e-44 182.2 514 29.6
MBI19_g45279_MAGBIO Magnolia biondii HOM05D007148 ORTHO05D009047 3.5e-43 180.3 392 36.5
AUR62026914 Chenopodium quinoa HOM05D007148 ORTHO05D009047 3.8e-42 176.8 371 35.8
FvH4_6g16490 Fragaria vesca HOM05D007148 ORTHO05D009047 9.5e-41 172.2 520 30.6
MSTRG.10326 Avicennia marina HOM05D007148 ORTHO05D009047 8.0e-40 169.1 347 40.1
Aa31LG1G21730 Aethionema arabicum HOM05D007148 ORTHO05D009047 2.0e-38 164.5 327 37.0
COL.COLO4_26948 Corchorus olitorius HOM05D007148 ORTHO05D009047 3.7e-37 160.2 438 34.5
vmacro08784 Vaccinium macrocarpon HOM05D007148 ORTHO05D009047 6.3e-37 159.5 332 36.7
Mapoly0046s0027 Marchantia polymorpha HOM05D007148 ORTHO05D009047 1.8e-36 157.9 511 27.8
Rhsim04G0143400 Rhododendron simsii HOM05D007148 ORTHO05D009047 2.0e-35 154.5 237 48.9
AUR62042066 Chenopodium quinoa HOM05D007148 ORTHO05D009047 1.3e-34 151.8 458 29.9
Aqoxy2G01740 Aquilegia oxysepala HOM05D007148 ORTHO05D009047 1.1e-33 148.7 361 31.6
C09p73390 Brassica napus HOM05D002509 ORTHO05D002758 4.3e-33 146.7 537 26.8
A10p32590 Brassica napus HOM05D002509 ORTHO05D002758 2.8e-32 144.1 564 26.4
BraA10t45294Z Brassica rapa HOM05D002509 ORTHO05D002758 2.8e-32 144.1 578 26.0
BolC9t60075H Brassica oleracea HOM05D002509 ORTHO05D002758 6.1e-32 142.9 548 26.8
AT5G03420 Arabidopsis thaliana HOM05D007148 ORTHO05D009047 1.8e-31 141.4 593 25.8
BcaC06g32057 Brassica carinata HOM05D002509 ORTHO05D002758 4.0e-31 140.2 602 25.7
PGSC0003DMG402003864 Solanum tuberosum HOM05D007148 ORTHO05D009047 1.5e-30 138.3 91 91.2
Sp6g39320 Schrenkiella parvula HOM05D007148 ORTHO05D009047 9.8e-30 135.6 609 25.6
Duzib128G0502 Durio zibethinus HOM05D007148 ORTHO05D009047 2.2e-29 134.4 443 30.5
AL6G12750 Arabidopsis lyrata HOM05D007148 ORTHO05D009047 5.4e-28 129.8 678 24.0
SGA_v2.0_scaffold40G15492 Striga asiatica HOM05D007148 ORTHO05D009047 7.0e-28 129.4 229 35.8
Migut.J00650 Erythranthe guttata HOM05D007148 ORTHO05D009047 4.6e-27 126.7 259 39.0
THA.LOC104826916 Tarenaya hassleriana HOM05D007148 ORTHO05D009047 3.0e-26 124.0 654 24.2
CDE02G0641 Ceratophyllum demersum HOM05D000146 ORTHO05D002110 3.9e-26 123.6 170 42.9
Carub.0006s0223 Capsella rubella HOM05D007148 ORTHO05D009047 5.0e-26 123.2 677 25.1
Pp3c15_1130 Physcomitrium patens HOM05D007148 ORTHO05D009047 1.5e-25 121.7 197 36.0
CARHR209920 Cardamine hirsuta HOM05D007148 ORTHO05D009047 1.9e-25 121.3 661 24.2
Cpa.g.sc102.25 Carica papaya HOM05D007148 ORTHO05D009047 2.1e-24 117.9 329 33.1
Pp3c9_1150 Physcomitrium patens HOM05D007148 ORTHO05D009047 2.1e-24 117.9 484 25.2
AagrBONN_evm.TU.Sc2ySwM_362.2026 Anthoceros agrestis HOM05D007148 ORTHO05D009047 1.4e-23 115.2 255 34.9
EL10Ac7g16644 Beta vulgaris HOM05D007148 ORTHO05D009047 5.2e-23 113.2 213 38.0
CSS0013124 Camellia sinensis var. sinensis HOM05D007148 ORTHO05D009047 3.4e-22 110.5 241 36.9
BcaNung02763 Brassica carinata HOM05D007148 ORTHO05D009047 5.8e-22 109.8 126 43.7
TWI74G0491 Tripterygium wilfordii HOM05D007148 ORTHO05D009047 1.1e-20 105.5 163 39.9
Sc20g0005580 Simmondsia chinensis HOM05D007148 ORTHO05D009047 3.2e-20 104.0 307 30.6
Atru.chr8.1790 Acer truncatum HOM05D007148 ORTHO05D009047 1.6e-19 101.7 176 43.2
CSS0045155 Camellia sinensis var. sinensis HOM05D007148 ORTHO05D009047 3.6e-16 90.5 100 54.0
THA.LOC104816351 Tarenaya hassleriana HOM05D007148 ORTHO05D009047 3.6e-16 90.5 203 35.0
Migut.J00649 Erythranthe guttata HOM05D007148 ORTHO05D009047 8.1e-16 89.4 51 70.6
CANSAT80G0842 Cannabis sativa HOM05D007148 ORTHO05D009047 5.2e-15 86.7 157 39.5
BcaC06g32060 Brassica carinata HOM05D007148 ORTHO05D009047 5.8e-14 83.2 137 38.0
vmacro08783 Vaccinium macrocarpon HOM05D007148 ORTHO05D009047 5.8e-14 83.2 282 31.9
QL03p002349 Quercus lobata HOM05D007148 ORTHO05D009047 2.7e-11 74.3 57 70.2
CBR_g23347 Chara braunii HOM05D005453 ORTHO05D006520 8.6e-10 69.3 280 25.4
SEGI_24698 Sequoiadendron giganteum HOM05D007148 ORTHO05D009047 8.6e-10 69.3 86 44.2
Aa31LG7G8080 Aethionema arabicum HOM05D005453 ORTHO05D006520 2.5e-09 67.8 199 27.1
SMO353G0350 Selaginella moellendorffii HOM05D005453 ORTHO05D006520 5.6e-09 66.6 151 30.5
Nn4g23024 Nelumbo nucifera HOM05D005453 ORTHO05D006520 1.6e-08 65.1 221 27.6
FvH4_3g24282 Fragaria vesca HOM05D007148 ORTHO05D009047 4.7e-08 63.5 59 64.4
Os03g0686900 Oryza sativa ssp. japonica HOM05D005453 ORTHO05D006520 4.7e-08 63.5 170 28.2
ATR0665G247 Amborella trichopoda HOM05D005453 ORTHO05D006520 6.2e-08 63.2 179 29.1
Carub.0001s2390 Capsella rubella HOM05D005453 ORTHO05D006520 6.2e-08 63.2 168 28.0
Glyma.02G022500 Glycine max HOM05D005453 ORTHO05D006520 8.1e-08 62.8 250 23.6
VMungo1215G2350 Vigna mungo HOM05D005453 ORTHO05D006520 1.1e-07 62.4 170 26.5
Zm00001eb217200 Zea mays HOM05D005453 ORTHO05D006520 1.8e-07 61.6 172 29.1
AUR62026269 Chenopodium quinoa HOM05D005453 ORTHO05D006520 4.0e-07 60.5 185 26.5
COL.COLO4_36184 Corchorus olitorius HOM05D005453 ORTHO05D006520 4.0e-07 60.5 168 28.6
AT1G27070 Arabidopsis thaliana HOM05D005453 ORTHO05D006520 6.8e-07 59.7 245 24.5
HanXRQChr08g0209161 Helianthus annuus HOM05D005453 ORTHO05D006520 6.8e-07 59.7 182 24.7
Cc11_g13580 Coffea canephora HOM05D005453 ORTHO05D006520 8.9e-07 59.3 302 22.2
Lj2g0004726 Lotus japonicus HOM05D005453 ORTHO05D006520 8.9e-07 59.3 226 24.8
MBI05_g12576_MAGBIO Magnolia biondii HOM05D005453 ORTHO05D006520 8.9e-07 59.3 179 27.4
PSO478G0523 Papaver somniferum HOM05D005453 ORTHO05D006520 8.9e-07 59.3 412 22.8
Phvul.002G067500 Phaseolus vulgaris HOM05D005453 ORTHO05D006520 8.9e-07 59.3 281 23.1
A09p40480 Brassica napus HOM05D003373 ORTHO05D004419 1.2e-06 58.9 168 26.8
BraA09t39545Z Brassica rapa HOM05D003373 ORTHO05D006520 1.2e-06 58.9 168 26.8
Prupe.1G266900 Prunus persica HOM05D005453 ORTHO05D006520 1.2e-06 58.9 168 28.6
AL1G38420 Arabidopsis lyrata HOM05D005453 ORTHO05D006520 1.5e-06 58.5 149 28.2
Lalb_Chr10g0097931 Lupinus albus HOM05D005453 ORTHO05D006520 1.5e-06 58.5 181 26.5
TWI75G0114 Tripterygium wilfordii HOM05D005453 ORTHO05D006520 1.5e-06 58.5 441 21.3
Ca_07371_v3 Cicer arietinum L. HOM05D005453 ORTHO05D006520 2.0e-06 58.2 192 25.5
THA.LOC104822093 Tarenaya hassleriana HOM05D005453 ORTHO05D006520 2.0e-06 58.2 259 24.7
Nitab4.5_0002382g0040 Nicotiana tabacum HOM05D005453 ORTHO05D006520 2.6e-06 57.8 316 22.8
Peaxi162Scf00209g00610 Petunia axillaris HOM05D005453 ORTHO05D006520 2.6e-06 57.8 182 24.2
ClCG05G024670 Citrullus lanatus HOM05D005453 ORTHO05D006520 3.4e-06 57.4 170 25.9
AagrBONN_evm.TU.Sc2ySwM_117.2704 Anthoceros agrestis HOM05D005453 ORTHO05D006520 4.4e-06 57.0 141 29.1
MD13G1079900 Malus domestica HOM05D005453 ORTHO05D006520 4.4e-06 57.0 220 23.6
Oeu011701.1 Olea europaea HOM05D005453 ORTHO05D006520 4.4e-06 57.0 259 22.0
DCAR_031056 Daucus carota HOM05D005453 ORTHO05D006520 5.8e-06 56.6 169 24.3
Thhalv10007340m.g Eutrema salsugineum HOM05D005453 ORTHO05D006520 5.8e-06 56.6 160 26.2
PRCOL_00003305 Prasinoderma coloniale HOM05D005453 ORTHO05D006520 5.8e-06 56.6 117 28.2
unitig_22.g6530 Utricularia gibba HOM05D005453 ORTHO05D006520 5.8e-06 56.6 170 26.5
CARHR024830 Cardamine hirsuta HOM05D005453 ORTHO05D006520 7.6e-06 56.2 260 22.3
Lsat_1_v5_gn_8_53620 Lactuca sativa HOM05D005453 ORTHO05D006520 7.6e-06 56.2 178 25.3
PGSC0003DMG400017617 Solanum tuberosum HOM05D005453 ORTHO05D006520 7.6e-06 56.2 170 24.1
SGA_v2.0_scaffold163G38065 Striga asiatica HOM05D005453 ORTHO05D006520 7.6e-06 56.2 170 24.1


User provided reference genes

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