Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc09g008230.3 Solanum lycopersicum HOM05D006449 ORTHO05D007995 2.2e-66 255.4 121 100.0
Sopen09g003050 Solanum pennellii HOM05D006449 ORTHO05D007995 2.2e-66 255.4 121 100.0
PGSC0003DMG400003863 Solanum tuberosum HOM05D006449 ORTHO05D007995 3.2e-65 251.5 121 97.5
CAN.G900.29 Capsicum annuum HOM05D006449 ORTHO05D007995 1.1e-62 243.0 121 94.2
Nitab4.5_0003861g0010 Nicotiana tabacum HOM05D006449 ORTHO05D007995 2.2e-61 238.8 121 92.6
Nitab4.5_0000814g0040 Nicotiana tabacum HOM05D006449 ORTHO05D007995 3.7e-61 238.0 121 91.7
Peaxi162Scf00311g00119 Petunia axillaris HOM05D006449 ORTHO05D007995 1.4e-60 236.1 121 90.1
Actinidia08770 Actinidia chinensis HOM05D006449 ORTHO05D007995 1.2e-56 223.0 119 84.0
Peaxi162Scf00638g00414 Petunia axillaris HOM05D006449 ORTHO05D007995 1.2e-56 223.0 121 86.8
Nn6g35286 Nelumbo nucifera HOM05D006449 ORTHO05D007995 1.6e-56 222.6 119 84.9
EL10Ac7g16636 Beta vulgaris HOM05D006449 ORTHO05D007995 8.0e-56 220.3 119 83.2
CsaV3_6G039970 Cucumis sativus L. HOM05D006449 ORTHO05D007995 1.0e-55 219.9 119 84.9
HanXRQChr15g0491571 Helianthus annuus HOM05D006449 ORTHO05D007995 1.4e-55 219.5 119 83.2
CSS0028691 Camellia sinensis var. sinensis HOM05D006449 ORTHO05D007995 2.3e-55 218.8 119 84.0
CiPaw.10G129500 Carya illinoinensis HOM05D006449 ORTHO05D007995 2.3e-55 218.8 118 85.6
DCAR_015000 Daucus carota HOM05D006449 ORTHO05D007995 2.3e-55 218.8 120 85.8
Sed0015731 Sechium edule HOM05D006449 ORTHO05D007995 2.3e-55 218.8 119 84.9
AUR62042508 Chenopodium quinoa HOM05D006449 ORTHO05D007995 5.2e-55 217.6 119 81.5
MSTRG.5764 Avicennia marina HOM05D006449 ORTHO05D007995 6.7e-55 217.2 119 84.0
ClCG04G009390 Citrullus lanatus HOM05D006449 ORTHO05D007995 6.7e-55 217.2 119 84.0
Psat6g074040 Pisum sativum HOM05D006449 ORTHO05D007995 6.7e-55 217.2 119 84.0
PGR004G0793 Punica granatum HOM05D006449 ORTHO05D007995 1.2e-54 216.5 119 84.9
AUR62040339 Chenopodium quinoa HOM05D006449 ORTHO05D007995 2.6e-54 215.3 119 80.7
Manes.09G065800 Manihot esculenta HOM05D006449 ORTHO05D007995 3.3e-54 214.9 119 80.7
Nn2g13802 Nelumbo nucifera HOM05D006449 ORTHO05D007995 4.4e-54 214.5 119 81.5
Ca_11505_v3 Cicer arietinum L. HOM05D006449 ORTHO05D007995 5.7e-54 214.2 119 83.2
ECA248G0052 Erigeron canadensis HOM05D006449 ORTHO05D007995 5.7e-54 214.2 119 84.0
Glyma.10G055200 Glycine max HOM05D006449 ORTHO05D007995 5.7e-54 214.2 119 80.7
Hma1.2p1_0205F.1_g086990 Hydrangea macrophylla HOM05D006449 ORTHO05D007995 5.7e-54 214.2 119 82.4
Phvul.007G219000 Phaseolus vulgaris HOM05D006449 ORTHO05D007995 9.7e-54 213.4 119 83.2
TPR.G11267 Trifolium pratense HOM05D006449 ORTHO05D007995 2.2e-53 212.2 119 80.7
Glyma.13G142300 Glycine max HOM05D006449 ORTHO05D007995 3.7e-53 211.5 119 79.8
Medtr1g063190 Medicago truncatula HOM05D006449 ORTHO05D007995 4.8e-53 211.1 119 81.5
Lj5g0001377 Lotus japonicus HOM05D006449 ORTHO05D007995 3.1e-52 208.4 119 80.7
TWI74G0214 Tripterygium wilfordii HOM05D006449 ORTHO05D007995 3.1e-52 208.4 117 82.1
Aqoxy1G01150 Aquilegia oxysepala HOM05D006449 ORTHO05D007995 5.3e-52 207.6 119 79.8
VMungo0720G3134 Vigna mungo HOM05D006449 ORTHO05D007995 7.0e-52 207.2 119 79.8
Thecc.05G067500 Theobroma cacao HOM05D006449 ORTHO05D007995 9.1e-52 206.8 119 79.8
TWI77G0881 Tripterygium wilfordii HOM05D006449 ORTHO05D007995 9.1e-52 206.8 117 81.2
Oeu041490.2 Olea europaea HOM05D006449 ORTHO05D007995 1.2e-51 206.5 126 80.2
Atru.chr8.1798 Acer truncatum HOM05D006449 ORTHO05D007995 2.0e-51 205.7 117 80.3
Hund26578 Selenicereus undatus HOM05D006449 ORTHO05D007995 3.5e-51 204.9 119 77.3
FAN05G0981 Fragaria x ananassa HOM05D006449 ORTHO05D007995 4.5e-51 204.5 121 82.6
FAN14G2797 Fragaria x ananassa HOM05D006449 ORTHO05D007995 4.5e-51 204.5 121 82.6
FAN14G3008 Fragaria x ananassa HOM05D006449 ORTHO05D007995 4.5e-51 204.5 121 82.6
RcHm_v2.0_Chr3g0470301 Rosa chinensis HOM05D006449 ORTHO05D007995 7.7e-51 203.8 120 83.3
Duzib093G0849 Durio zibethinus HOM05D006449 ORTHO05D007995 1.3e-50 203.0 119 77.3
FvH4_6g16440 Fragaria vesca HOM05D006449 ORTHO05D007995 1.3e-50 203.0 121 81.8
Gorai.002G246900 Gossypium raimondii HOM05D006449 ORTHO05D007995 1.7e-50 202.6 119 78.2
Potri.016G093500 Populus trichocarpa HOM05D006449 ORTHO05D007995 1.7e-50 202.6 122 80.3
FAN02G2429 Fragaria x ananassa HOM05D006449 ORTHO05D007995 2.2e-50 202.2 121 81.8
Hund20380 Selenicereus undatus HOM05D006449 ORTHO05D007995 2.2e-50 202.2 119 76.5
Sabra16G0098600 Salix brachista HOM05D006449 ORTHO05D007995 1.5e-49 199.5 122 79.5
Gohir.A01G213500 Gossypium hirsutum HOM05D006449 ORTHO05D007995 2.5e-49 198.7 119 76.5
Gohir.D01G202200 Gossypium hirsutum HOM05D006449 ORTHO05D007995 4.2e-49 198.0 119 77.3
CDE09G0874 Ceratophyllum demersum HOM05D006449 ORTHO05D007995 5.5e-49 197.6 119 76.5
SEGI_04945 Sequoiadendron giganteum HOM05D006449 ORTHO05D007995 5.5e-49 197.6 116 77.6
Lsat_1_v5_gn_1_52340 Lactuca sativa HOM05D006449 ORTHO05D007995 2.7e-48 195.3 119 76.5
THA.LOC104823475 Tarenaya hassleriana HOM05D006449 ORTHO05D007995 2.7e-48 195.3 117 76.9
Thhalv10017435m.g Eutrema salsugineum HOM05D006449 ORTHO05D007995 5.2e-47 191.0 115 76.5
GSVIVG01033644001 Vitis vinifera HOM05D006449 ORTHO05D007995 5.2e-47 191.0 120 75.8
Zm00001eb038700 Zea mays HOM05D006449 ORTHO05D007995 6.8e-47 190.7 124 71.0
BcaB01g03807 Brassica carinata HOM05D006449 ORTHO05D007995 8.8e-47 190.3 116 75.9
A05p08950 Brassica napus HOM05D006449 ORTHO05D007995 2.0e-46 189.1 116 75.0
C04p11060 Brassica napus HOM05D006449 ORTHO05D007995 2.0e-46 189.1 116 75.0
BolC4t22754H Brassica oleracea HOM05D006449 ORTHO05D007995 2.0e-46 189.1 116 75.0
BraA05t19857Z Brassica rapa HOM05D006449 ORTHO05D007995 2.0e-46 189.1 116 75.0
CSS0018897 Camellia sinensis var. sinensis HOM05D006449 ORTHO05D007995 2.0e-46 189.1 131 69.5
Os08g0564500 Oryza sativa ssp. japonica HOM05D006449 ORTHO05D007995 3.4e-46 188.3 124 71.0
AT2G36930 Arabidopsis thaliana HOM05D006449 ORTHO05D007995 4.4e-46 188.0 116 75.0
BcaB02g09320 Brassica carinata HOM05D006449 ORTHO05D007995 4.4e-46 188.0 116 74.1
BcaC02g11815 Brassica carinata HOM05D006449 ORTHO05D007995 4.4e-46 188.0 116 74.1
CARHR131400 Cardamine hirsuta HOM05D006449 ORTHO05D007995 7.5e-46 187.2 117 72.6
A03p20330 Brassica napus HOM05D006449 ORTHO05D007995 9.8e-46 186.8 116 74.1
BraA03t11279Z Brassica rapa HOM05D006449 ORTHO05D007995 9.8e-46 186.8 116 74.1
unitig_749.g14285 Utricularia gibba HOM05D006449 ORTHO05D007995 1.7e-45 186.0 120 73.3
AL4G33170 Arabidopsis lyrata HOM05D006449 ORTHO05D007995 2.2e-45 185.7 116 73.3
BcaC01g05620 Brassica carinata HOM05D006449 ORTHO05D007995 2.2e-45 185.7 116 73.3
C03p23890 Brassica napus HOM05D006449 ORTHO05D007995 2.2e-45 185.7 116 73.3
BolC3t14781H Brassica oleracea HOM05D006449 ORTHO05D007995 2.2e-45 185.7 116 73.3
Sp4g19220 Schrenkiella parvula HOM05D006449 ORTHO05D007995 2.2e-45 185.7 116 74.1
Carub.0004s1878 Capsella rubella HOM05D006449 ORTHO05D007995 6.3e-45 184.1 116 74.1
Nitab4.5_0029554g0010 Nicotiana tabacum HOM05D006449 ORTHO05D007995 1.9e-41 172.6 91 86.8
Lalb_Chr02g0155801 Lupinus albus HOM05D006449 ORTHO05D007995 4.2e-41 171.4 87 86.2
Cfa017617 Carpinus fangiana HOM05D006449 ORTHO05D007995 7.2e-41 170.6 130 66.9
SGA_v2.0_scaffold75G24848 Striga asiatica HOM05D006449 ORTHO05D007995 1.2e-40 169.9 90 85.6
Rhsim03G0091200 Rhododendron simsii HOM05D006449 ORTHO05D007995 1.6e-40 169.5 90 84.4
SGA_v2.0_scaffold40G15520 Striga asiatica HOM05D006449 ORTHO05D007995 1.6e-40 169.5 90 84.4
HanXRQChr01g0027751 Helianthus annuus HOM05D006449 ORTHO05D007995 2.8e-40 168.7 90 81.1
Sabra06G0098200 Salix brachista HOM05D006449 ORTHO05D007995 1.4e-39 166.4 91 84.6
Mapoly0185s0018 Marchantia polymorpha HOM05D006449 ORTHO05D007995 2.3e-39 165.6 119 64.7
Aa31LG5G22150 Aethionema arabicum HOM05D006449 ORTHO05D007995 4.0e-39 164.9 117 67.5
QL07p043219 Quercus lobata HOM05D006449 ORTHO05D007995 5.2e-39 164.5 87 82.8
MELO3C024474.2 Cucumis melo HOM05D006449 ORTHO05D007995 6.8e-39 164.1 87 83.9
COL.COLO4_26955 Corchorus olitorius HOM05D006449 ORTHO05D007995 1.5e-38 162.9 99 74.7
CANSAT80G0535 Cannabis sativa HOM05D006449 ORTHO05D007995 6.3e-37 157.5 87 83.9
Pp3c13_22060 Physcomitrium patens HOM05D006449 ORTHO05D007995 1.4e-36 156.4 115 62.6
arahy.Tifrunner.gnm1.ann1.9GBJ25 Arachis hypogaea HOM05D006449 ORTHO05D007995 1.2e-35 153.3 86 81.4
arahy.Tifrunner.gnm1.ann1.D9FX9P Arachis hypogaea HOM05D006449 ORTHO05D007995 1.2e-35 153.3 86 81.4
Sc20g0005520 Simmondsia chinensis HOM05D006449 ORTHO05D007995 1.2e-35 153.3 86 77.9
Cc06_g04250 Coffea canephora HOM05D006449 ORTHO05D007995 3.5e-35 151.8 76 86.8
MD12G1112600 Malus domestica HOM05D006449 ORTHO05D007995 7.8e-35 150.6 86 79.1
Migut.J00654 Erythranthe guttata HOM05D006449 ORTHO05D007995 1.0e-34 150.2 86 79.1
ATR0219G007 Amborella trichopoda HOM05D006449 ORTHO05D007995 1.7e-34 149.4 87 73.6
MD00G1155400 Malus domestica HOM05D006449 ORTHO05D007995 5.0e-34 147.9 86 77.9
PSO063G3287 Papaver somniferum HOM05D006449 ORTHO05D007995 1.1e-33 146.7 115 61.7
PSO339G4301 Papaver somniferum HOM05D006449 ORTHO05D007995 1.1e-33 146.7 115 61.7
Oeu005023.1 Olea europaea HOM05D006449 ORTHO05D007995 9.5e-33 143.7 101 70.3
Potri.006G124100 Populus trichocarpa HOM05D006449 ORTHO05D007995 1.2e-32 143.3 73 87.7
Ciclev10013228m.g Citrus clementina HOM05D006449 ORTHO05D007995 2.8e-32 142.1 84 76.2
Haze_20546 Corylus avellana HOM05D006449 ORTHO05D007995 3.6e-32 141.7 100 67.0
vmacro07293 Vaccinium macrocarpon HOM05D006449 ORTHO05D007995 1.4e-31 139.8 103 65.0
HPP92_025806 Vanilla planifolia HOM05D006449 ORTHO05D007995 1.8e-31 139.4 89 74.2
Manes.08G011000 Manihot esculenta HOM05D006449 ORTHO05D007995 1.4e-28 129.8 97 66.0
SMO144G0185 Selaginella moellendorffii HOM05D006449 ORTHO05D007995 3.3e-25 118.6 67 73.1
Prupe.7G129700 Prunus persica HOM05D006449 ORTHO05D007995 6.2e-24 114.4 65 78.5
TAR633G1413 Trochodendron aralioides HOM05D002509 ORTHO05D002758 1.0e-18 97.1 54 79.6
Lj3A986G82 Lonicera japonica HOM05D006449 ORTHO05D007995 1.6e-16 89.7 119 44.5
PRCOL_00003735 Prasinoderma coloniale HOM05D006449 ORTHO05D007995 3.1e-15 85.5 110 41.8
Cre17.g734628 Chlamydomonas reinhardtii HOM05D006449 ORTHO05D007995 2.6e-14 82.4 117 37.6
CBR_g8310 Chara braunii HOM05D006449 ORTHO05D007995 1.3e-13 80.1 115 38.3
MCO09G543 Micromonas commoda HOM05D006449 ORTHO05D007995 8.3e-13 77.4 146 33.6
MSTRG.19181 Avicennia marina HOM05D006449 ORTHO05D007995 3.3e-09 65.5 33 90.9
HanXRQChr16g0526221 Helianthus annuus HOM05D006449 ORTHO05D007995 1.2e-08 63.5 30 83.3
Thhalv10009663m.g Eutrema salsugineum HOM05D005081 ORTHO05D005506 2.1e-08 62.8 31 90.3


User provided reference genes

Program Settings