Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen09g002430 Solanum pennellii HOM05D006032 ORTHO05D007544 1.1e-145 520.0 266 100.0
PGSC0003DMG400001748 Solanum tuberosum HOM05D006032 ORTHO05D007544 2.5e-142 508.8 265 98.1
Nitab4.5_0006802g0050 Nicotiana tabacum HOM05D006032 ORTHO05D007544 2.9e-127 458.8 267 89.9
Nitab4.5_0002682g0080 Nicotiana tabacum HOM05D006032 ORTHO05D007544 6.5e-127 457.6 267 89.5
CAN.G1091.3 Capsicum annuum HOM05D006032 ORTHO05D007544 1.3e-122 443.4 268 87.3
Cc02_g38440 Coffea canephora HOM05D006032 ORTHO05D007544 8.0e-117 424.1 268 82.1
Hma1.2p1_2961F.1_g330870 Hydrangea macrophylla HOM05D006032 ORTHO05D007544 5.4e-113 411.4 266 80.1
SalBow3G2277 Salvia bowleyana HOM05D006032 ORTHO05D007544 5.0e-111 404.8 267 78.7
MSTRG.20857 Avicennia marina HOM05D006032 ORTHO05D007544 2.1e-109 399.4 268 78.4
CSS0027447 Camellia sinensis var. sinensis HOM05D006032 ORTHO05D007544 6.1e-109 397.9 267 76.8
DCAR_006944 Daucus carota HOM05D006032 ORTHO05D007544 1.4e-108 396.7 265 79.6
COL.COLO4_12764 Corchorus olitorius HOM05D006032 ORTHO05D007544 3.0e-108 395.6 266 77.1
Oeu054338.1 Olea europaea HOM05D006032 ORTHO05D007544 1.5e-107 393.3 264 76.9
Lj7A509T108 Lonicera japonica HOM05D006032 ORTHO05D007544 2.0e-107 392.9 270 77.4
Ciclev10021696m.g Citrus clementina HOM05D006032 ORTHO05D007544 4.4e-107 391.7 270 77.0
Atru.chr5.551 Acer truncatum HOM05D006032 ORTHO05D007544 9.8e-107 390.6 268 76.9
HanXRQChr06g0170291 Helianthus annuus HOM05D006032 ORTHO05D007544 1.7e-106 389.8 266 78.2
Thecc.01G353900 Theobroma cacao HOM05D006032 ORTHO05D007544 1.4e-105 386.7 268 75.0
Migut.B01790 Erythranthe guttata HOM05D006032 ORTHO05D007544 1.8e-105 386.3 267 76.0
Lsat_1_v5_gn_7_3801 Lactuca sativa HOM05D006032 ORTHO05D007544 2.7e-104 382.5 264 75.4
Nn1g01650 Nelumbo nucifera HOM05D006032 ORTHO05D007544 3.5e-104 382.1 263 74.9
PGR031G1164 Punica granatum HOM05D006032 ORTHO05D007544 5.9e-104 381.3 263 74.5
ECA236G4677 Erigeron canadensis HOM05D006032 ORTHO05D007544 2.3e-103 379.4 263 76.4
Manes.01G253200 Manihot esculenta HOM05D006032 ORTHO05D007544 2.9e-103 379.0 264 73.9
Haze_15552 Corylus avellana HOM05D006032 ORTHO05D007544 3.8e-103 378.6 269 74.7
GSVIVG01027006001 Vitis vinifera HOM05D006032 ORTHO05D007544 6.6e-103 377.9 269 74.0
CANSAT56G0440 Cannabis sativa HOM05D006032 ORTHO05D007544 1.1e-102 377.1 270 74.1
Cfa003882 Carpinus fangiana HOM05D006032 ORTHO05D007544 5.6e-102 374.8 269 74.3
ClCG05G001320 Citrullus lanatus HOM05D006032 ORTHO05D007544 7.3e-102 374.4 271 74.2
Rhsim12G0138500 Rhododendron simsii HOM05D006032 ORTHO05D007544 1.6e-101 373.2 269 72.1
QL04p055082 Quercus lobata HOM05D006032 ORTHO05D007544 2.1e-101 372.9 265 74.0
Glyma.18G237400 Glycine max HOM05D006032 ORTHO05D007544 4.7e-101 371.7 270 70.7
TWI59G0434 Tripterygium wilfordii HOM05D006032 ORTHO05D007544 4.7e-101 371.7 264 73.9
MELO3C006088.2 Cucumis melo HOM05D006032 ORTHO05D007544 6.1e-101 371.3 275 72.0
Aqoxy7G00233 Aquilegia oxysepala HOM05D006032 ORTHO05D007544 1.0e-100 370.5 260 70.8
Glyma.09G255500 Glycine max HOM05D006032 ORTHO05D007544 1.8e-100 369.8 270 69.3
CsaV3_3G008690 Cucumis sativus L. HOM05D006032 ORTHO05D007544 4.0e-100 368.6 275 72.4
SGA_v2.0_scaffold95G28814 Striga asiatica HOM05D006032 ORTHO05D007544 4.0e-100 368.6 277 72.2
CiPaw.01G065600 Carya illinoinensis HOM05D006032 ORTHO05D007544 6.8e-100 367.9 269 72.5
Gohir.D07G146100 Gossypium hirsutum HOM05D006032 ORTHO05D007544 6.8e-100 367.9 262 72.5
Gorai.001G158300 Gossypium raimondii HOM05D006032 ORTHO05D007544 6.8e-100 367.9 262 72.5
Gohir.A07G140700 Gossypium hirsutum HOM05D006032 ORTHO05D007544 1.2e-99 367.1 268 70.9
Eucgr.D02319 Eucalyptus grandis HOM05D006032 ORTHO05D007544 2.0e-99 366.3 266 71.4
Lalb_Chr19g0126911 Lupinus albus HOM05D006032 ORTHO05D007544 7.5e-99 364.4 267 71.5
VMungo1383G0296 Vigna mungo HOM05D006032 ORTHO05D007544 2.2e-98 362.8 270 70.0
Sed0022476 Sechium edule HOM05D006032 ORTHO05D007544 3.7e-98 362.1 271 72.0
PSO782G5129 Papaver somniferum HOM05D006032 ORTHO05D007544 1.1e-97 360.5 270 70.4
Phvul.008G059200 Phaseolus vulgaris HOM05D006032 ORTHO05D007544 1.1e-97 360.5 270 69.3
Cpa.g.sc184.23 Carica papaya HOM05D006032 ORTHO05D007544 1.4e-97 360.1 271 70.1
Prupe.2G175800 Prunus persica HOM05D006032 ORTHO05D007544 1.4e-97 360.1 264 72.0
arahy.Tifrunner.gnm1.ann1.S0M071 Arachis hypogaea HOM05D006032 ORTHO05D007544 1.8e-97 359.8 273 69.2
Potri.002G154600 Populus trichocarpa HOM05D006032 ORTHO05D007544 2.4e-97 359.4 267 71.2
Sabra02G0122600 Salix brachista HOM05D006032 ORTHO05D007544 3.2e-97 359.0 269 71.0
arahy.Tifrunner.gnm1.ann1.XQ5AKE Arachis hypogaea HOM05D006032 ORTHO05D007544 4.1e-97 358.6 278 68.3
PSO478G3538 Papaver somniferum HOM05D006032 ORTHO05D007544 2.0e-96 356.3 271 69.0
THA.LOC104817034 Tarenaya hassleriana HOM05D006032 ORTHO05D007544 3.5e-96 355.5 270 69.3
BcaB01g02282 Brassica carinata HOM05D006032 ORTHO05D007544 7.8e-96 354.4 265 69.4
Sp6g00830 Schrenkiella parvula HOM05D006032 ORTHO05D007544 7.8e-96 354.4 266 68.4
Carub.0006s3637 Capsella rubella HOM05D006032 ORTHO05D007544 1.3e-95 353.6 265 68.3
Thhalv10028885m.g Eutrema salsugineum HOM05D006032 ORTHO05D007544 1.7e-95 353.2 266 68.8
AUR62004402 Chenopodium quinoa HOM05D006032 ORTHO05D007544 3.0e-95 352.4 263 70.0
AL6G52090 Arabidopsis lyrata HOM05D006032 ORTHO05D007544 3.9e-95 352.1 268 67.5
BcaC04g24141 Brassica carinata HOM05D006032 ORTHO05D007544 5.0e-95 351.7 265 70.2
AUR62022608 Chenopodium quinoa HOM05D006032 ORTHO05D007544 5.0e-95 351.7 262 69.8
Lj4g0026145 Lotus japonicus HOM05D006032 ORTHO05D007544 6.6e-95 351.3 264 69.7
CARHR249010 Cardamine hirsuta HOM05D006032 ORTHO05D007544 1.1e-94 350.5 269 69.1
BcaB01g02152 Brassica carinata HOM05D006032 ORTHO05D007544 3.3e-94 349.0 265 68.3
BcaC01g06855 Brassica carinata HOM05D006032 ORTHO05D007544 3.3e-94 349.0 265 68.3
BolC3t16171H Brassica oleracea HOM05D006032 ORTHO05D007544 3.3e-94 349.0 265 68.3
C03p38990 Brassica napus HOM05D006032 ORTHO05D007544 5.6e-94 348.2 267 68.9
TAR629G0912 Trochodendron aralioides HOM05D006032 ORTHO05D007544 7.3e-94 347.8 246 73.6
AT4G01310 Arabidopsis thaliana HOM05D006032 ORTHO05D007544 9.5e-94 347.4 260 69.2
Sc01g0003280 Simmondsia chinensis HOM05D006032 ORTHO05D007544 1.2e-93 347.1 262 68.3
MD01G1069800 Malus domestica HOM05D006032 ORTHO05D007544 3.6e-93 345.5 268 69.8
Peaxi162Scf00815g00338 Petunia axillaris HOM05D006032 ORTHO05D007544 3.6e-93 345.5 184 93.5
ATR0661G584 Amborella trichopoda HOM05D006032 ORTHO05D007544 1.4e-92 343.6 250 70.8
FvH4_7g15110 Fragaria vesca HOM05D006032 ORTHO05D007544 2.3e-92 342.8 262 70.2
FAN06G2046 Fragaria x ananassa HOM05D006032 ORTHO05D007544 5.2e-92 341.7 262 69.8
FAN06G3864 Fragaria x ananassa HOM05D006032 ORTHO05D007544 5.2e-92 341.7 262 69.8
FAN03G1341 Fragaria x ananassa HOM05D006032 ORTHO05D007544 8.9e-92 340.9 262 69.8
EL10Ac1g00366 Beta vulgaris HOM05D006032 ORTHO05D007544 1.5e-91 340.1 308 61.4
RcHm_v2.0_Chr1g0357301 Rosa chinensis HOM05D006032 ORTHO05D007544 1.5e-91 340.1 262 69.5
MD07G1132700 Malus domestica HOM05D006032 ORTHO05D007544 2.0e-91 339.7 270 68.9
Medtr7g078800 Medicago truncatula HOM05D006032 ORTHO05D007544 2.0e-91 339.7 268 67.5
FAN10G0977 Fragaria x ananassa HOM05D006032 ORTHO05D007544 2.6e-91 339.3 262 69.5
FAN10G2244 Fragaria x ananassa HOM05D006032 ORTHO05D007544 2.6e-91 339.3 262 69.5
Psat3g107160 Pisum sativum HOM05D006032 ORTHO05D007544 3.4e-91 339.0 272 66.9
TPR.G22296 Trifolium pratense HOM05D006032 ORTHO05D007544 4.4e-91 338.6 272 66.5
CDE12G0723 Ceratophyllum demersum HOM05D006032 ORTHO05D007544 9.8e-91 337.4 227 74.4
A09p00050 Brassica napus HOM05D003611 ORTHO05D004281 1.3e-90 337.0 261 68.2
BraA09t35736Z Brassica rapa HOM05D003611 ORTHO05D004281 1.3e-90 337.0 261 68.2
Aa31LG5G740 Aethionema arabicum HOM05D003611 ORTHO05D007544 1.7e-90 336.7 244 71.3
CDE04G3178 Ceratophyllum demersum HOM05D006032 ORTHO05D007544 2.2e-90 336.3 270 64.1
Solyc09g007560.4 Solanum lycopersicum HOM05D006032 ORTHO05D007544 2.2e-90 336.3 176 98.9
C09p00670 Brassica napus HOM05D003611 ORTHO05D004281 3.7e-90 335.5 250 71.2
BolC9t53001H Brassica oleracea HOM05D003611 ORTHO05D004281 6.4e-90 334.7 250 70.0
Ca_00819_v3 Cicer arietinum L. HOM05D006032 ORTHO05D007544 8.3e-90 334.3 271 67.2
HPP92_025634 Vanilla planifolia HOM05D006032 ORTHO05D007544 1.1e-86 323.9 216 72.7
Potri.014G089100 Populus trichocarpa HOM05D006032 ORTHO05D007544 1.6e-85 320.1 265 64.9
unitig_22.g5344 Utricularia gibba HOM05D003213 ORTHO05D003693 2.1e-85 319.7 212 75.0
Ah.05g180230 Amaranthus hybridus HOM05D003611 ORTHO05D007544 4.7e-85 318.5 262 65.6
Hund27251 Selenicereus undatus HOM05D006032 ORTHO05D007544 5.2e-84 315.1 248 68.1
vmacro20901 Vaccinium macrocarpon HOM05D006032 ORTHO05D007544 7.5e-83 311.2 270 64.4
Os03g0125000 Oryza sativa ssp. japonica HOM05D006032 ORTHO05D007544 1.4e-76 290.4 218 66.1
Zm00001eb001840 Zea mays HOM05D006032 ORTHO05D007544 1.4e-76 290.4 221 65.6
Dinv32511 Davidia involucrata HOM05D006032 ORTHO05D007544 2.9e-74 282.7 238 65.5
MBI04_g41504_MAGBIO Magnolia biondii HOM05D006032 ORTHO05D007544 1.2e-69 267.3 264 56.1
Mapoly0001s0334 Marchantia polymorpha HOM05D006032 ORTHO05D007544 1.1e-68 264.2 239 54.4
A03p31970 Brassica napus HOM05D006032 ORTHO05D007544 1.8e-68 263.5 196 70.9
BraA03t12369Z Brassica rapa HOM05D006032 ORTHO05D007544 1.8e-68 263.5 196 70.9
FAN01G2970 Fragaria x ananassa HOM05D006032 ORTHO05D007544 1.2e-67 260.8 194 71.1
Pp3c2_17110 Physcomitrium patens HOM05D006032 ORTHO05D007544 6.4e-66 255.0 233 51.1
Pp3c1_25850 Physcomitrium patens HOM05D006032 ORTHO05D007544 3.2e-65 252.7 249 50.2
AagrBONN_evm.TU.Sc2ySwM_228.1445 Anthoceros agrestis HOM05D006032 ORTHO05D007544 9.3e-65 251.1 194 59.3
SMO358G0099 Selaginella moellendorffii HOM05D006032 ORTHO05D007544 1.3e-63 247.3 180 63.3
MSTRG.17292 Avicennia marina HOM05D006032 ORTHO05D007544 1.9e-57 226.9 133 86.5
SEGI_08351 Sequoiadendron giganteum HOM05D006032 ORTHO05D007544 8.7e-55 218.0 141 70.9
Rhsim01G0165400 Rhododendron simsii HOM05D006032 ORTHO05D007544 3.7e-45 186.0 160 65.0
Haze_27649 Corylus avellana HOM05D006032 ORTHO05D007544 1.1e-44 184.5 154 53.2
COL.COLO4_27391 Corchorus olitorius HOM05D006032 ORTHO05D007544 2.0e-43 180.3 113 76.1
Cfa021143 Carpinus fangiana HOM05D006032 ORTHO05D001488 3.5e-40 169.5 155 49.0
Sabra14G0064700 Salix brachista HOM05D006032 ORTHO05D007544 4.3e-38 162.5 115 67.0
C02p38190 Brassica napus HOM05D006032 ORTHO05D007544 2.8e-37 159.8 264 41.3
BolC2t09834H Brassica oleracea HOM05D006032 ORTHO05D007544 2.8e-37 159.8 264 41.3
BcaC03g16053 Brassica carinata HOM05D006032 ORTHO05D007544 4.8e-37 159.1 264 41.3
Actinidia02824 Actinidia chinensis HOM05D006032 ORTHO05D007544 3.9e-31 139.4 89 80.9
Nitab4.5_0000681g0050 Nicotiana tabacum HOM05D006032 ORTHO05D007544 2.8e-29 133.3 68 97.1
Nitab4.5_0000681g0060 Nicotiana tabacum HOM05D006032 ORTHO05D007544 1.4e-28 131.0 70 90.0
SMO196G0051 Selaginella moellendorffii HOM05D006032 ORTHO05D007544 5.0e-26 122.5 179 36.3
VMungo1309G2152 Vigna mungo HOM05D006032 ORTHO05D007544 6.3e-21 105.5 81 69.1
Cfa024600 Carpinus fangiana HOM05D006032 ORTHO05D122942 9.4e-17 91.7 170 32.9
Rhsim12G0138600 Rhododendron simsii HOM05D006032 ORTHO05D007544 2.7e-16 90.1 88 61.4
VMungo0647G0507 Vigna mungo HOM05D006032 ORTHO05D007227 1.4e-15 87.8 66 68.2
Psat2g092280 Pisum sativum HOM05D006032 ORTHO05D007544 4.4e-14 82.8 60 68.3
unitig_8.g3788 Utricularia gibba HOM05D006032 ORTHO05D007544 9.1e-12 75.1 102 45.1
Dinv43855 Davidia involucrata HOM05D006032 ORTHO05D007544 7.7e-11 72.0 39 87.2
FvH4_5g19211 Fragaria vesca HOM05D006032 ORTHO05D197553 1.2e-06 58.2 43 72.1


User provided reference genes

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