Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen09g001820 Solanum pennellii HOM05D004061 ORTHO05D004693 4.4e-135 484.6 233 100.0
Solyc09g005960.4 Solanum lycopersicum HOM05D004061 ORTHO05D004693 7.0e-133 477.2 233 97.4
Nitab4.5_0006252g0020 Nicotiana tabacum HOM05D004061 ORTHO05D004693 1.8e-109 399.4 233 85.0
Nitab4.5_0000643g0160 Nicotiana tabacum HOM05D004061 ORTHO05D004693 1.5e-106 389.8 233 83.7
Peaxi162Scf00597g00310 Petunia axillaris HOM05D004061 ORTHO05D004693 1.9e-98 362.8 252 73.0
Peaxi162Scf00604g00010 Petunia axillaris HOM05D004061 ORTHO05D004693 4.0e-88 328.6 233 70.4
Nitab4.5_0000202g0310 Nicotiana tabacum HOM05D004061 ORTHO05D004693 2.6e-87 325.9 226 70.4
Cc06_g03260 Coffea canephora HOM05D004061 ORTHO05D004693 2.1e-84 316.2 230 69.1
MSTRG.19117 Avicennia marina HOM05D004061 ORTHO05D004693 2.5e-82 309.3 230 67.4
Migut.L01642 Erythranthe guttata HOM05D004061 ORTHO05D004693 1.4e-80 303.5 231 65.8
CAN.G435.5 Capsicum annuum HOM05D004061 ORTHO05D004693 1.2e-79 300.4 212 71.2
Solyc10g084500.1 Solanum lycopersicum HOM05D004061 ORTHO05D004693 2.6e-79 299.3 226 64.6
PGSC0003DMG400011053 Solanum tuberosum HOM05D004061 ORTHO05D004693 1.3e-78 297.0 226 64.2
Oeu035162.1 Olea europaea HOM05D004061 ORTHO05D004693 2.9e-78 295.8 220 65.5
Sopen10g033930 Solanum pennellii HOM05D004061 ORTHO05D004693 1.1e-77 293.9 221 63.8
Rhsim05G0184700 Rhododendron simsii HOM05D004061 ORTHO05D004693 6.6e-75 284.6 232 62.9
Lj3A975G70 Lonicera japonica HOM05D004061 ORTHO05D004693 1.9e-74 283.1 234 61.5
Actinidia05286 Actinidia chinensis HOM05D004061 ORTHO05D004693 3.3e-74 282.3 233 62.7
Ca_08806_v3 Cicer arietinum L. HOM05D004061 ORTHO05D004693 2.1e-73 279.6 223 60.5
CiPaw.10G139500 Carya illinoinensis HOM05D004061 ORTHO05D004693 2.4e-72 276.2 212 61.8
vmacro08681 Vaccinium macrocarpon HOM05D004061 ORTHO05D004693 2.4e-72 276.2 202 68.3
Glyma.19G176300 Glycine max HOM05D004061 ORTHO05D004693 8.4e-70 267.7 219 59.4
unitig_8.g4322 Utricularia gibba HOM05D004061 ORTHO05D004693 8.4e-70 267.7 229 58.1
vmacro20095 Vaccinium macrocarpon HOM05D004061 ORTHO05D004693 8.4e-70 267.7 204 63.7
CANSAT80G1299 Cannabis sativa HOM05D004061 ORTHO05D004693 1.1e-69 267.3 221 62.0
Psat0s1952g0040 Pisum sativum HOM05D004061 ORTHO05D004693 1.4e-69 266.9 223 57.4
TPR.G21459 Trifolium pratense HOM05D004061 ORTHO05D004693 1.4e-69 266.9 223 57.8
Medtr7g100150 Medicago truncatula HOM05D004061 ORTHO05D004693 2.4e-69 266.2 223 58.3
CiPaw.09G185500 Carya illinoinensis HOM05D004061 ORTHO05D004693 4.2e-69 265.4 218 60.6
TAR633G1989 Trochodendron aralioides HOM05D004061 ORTHO05D004693 5.4e-69 265.0 213 61.0
Lj1g0024664 Lotus japonicus HOM05D004061 ORTHO05D004693 2.1e-68 263.1 221 57.9
Duzib128G0701 Durio zibethinus HOM05D004061 ORTHO05D004693 2.7e-68 262.7 206 64.1
HanXRQChr13g0392181 Helianthus annuus HOM05D004061 ORTHO05D004693 6.0e-68 261.5 236 56.8
Lalb_Chr25g0289361 Lupinus albus HOM05D004061 ORTHO05D004693 7.8e-68 261.2 216 57.4
Duzib093G0371 Durio zibethinus HOM05D004061 ORTHO05D004693 1.3e-67 260.4 222 60.8
GSVIVG01025578001 Vitis vinifera HOM05D004061 ORTHO05D004693 2.3e-67 259.6 210 59.5
Manes.08G000500 Manihot esculenta HOM05D004061 ORTHO05D004693 3.9e-67 258.8 224 58.5
ECA248G1662 Erigeron canadensis HOM05D004061 ORTHO05D004693 1.1e-66 257.3 218 58.3
Cfa017465 Carpinus fangiana HOM05D004061 ORTHO05D004693 1.9e-66 256.5 187 63.6
Glyma.03G175700 Glycine max HOM05D004061 ORTHO05D004693 1.9e-66 256.5 218 56.9
Lsat_1_v5_gn_1_54740 Lactuca sativa HOM05D004061 ORTHO05D004693 1.9e-66 256.5 238 57.1
Ciclev10012656m.g Citrus clementina HOM05D004061 ORTHO05D004693 7.3e-66 254.6 227 57.3
Potri.016G081900 Populus trichocarpa HOM05D004061 ORTHO05D004693 7.3e-66 254.6 212 59.9
QL07p045968 Quercus lobata HOM05D004061 ORTHO05D004693 1.3e-65 253.8 222 57.7
Thecc.05G049300 Theobroma cacao HOM05D004061 ORTHO05D004693 1.3e-65 253.8 215 63.3
SalBow4G2839 Salvia bowleyana HOM05D004061 ORTHO05D004693 3.6e-65 252.3 244 54.9
arahy.Tifrunner.gnm1.ann1.Y28VT2 Arachis hypogaea HOM05D004061 ORTHO05D004693 8.1e-65 251.1 211 58.3
Glyma.13G134900 Glycine max HOM05D004061 ORTHO05D004693 8.1e-65 251.1 221 57.5
VMungo1383G1764 Vigna mungo HOM05D004061 ORTHO05D004693 1.4e-64 250.4 222 54.1
ClCG04G008650 Citrullus lanatus HOM05D004061 ORTHO05D004693 1.8e-64 250.0 223 57.0
TWI77G0888 Tripterygium wilfordii HOM05D004061 ORTHO05D004693 1.8e-64 250.0 206 59.7
MD12G1131500 Malus domestica HOM05D004061 ORTHO05D004693 5.3e-64 248.4 223 57.0
Haze_20694 Corylus avellana HOM05D004061 ORTHO05D004693 9.0e-64 247.7 250 51.2
HanXRQChr11g0349611 Helianthus annuus HOM05D004061 ORTHO05D004693 9.0e-64 247.7 221 54.8
Lalb_Chr20g0113041 Lupinus albus HOM05D004061 ORTHO05D004693 1.5e-63 246.9 229 54.6
arahy.Tifrunner.gnm1.ann1.9VFE0J Arachis hypogaea HOM05D004061 ORTHO05D004693 2.6e-63 246.1 233 54.5
Sc20g0004290 Simmondsia chinensis HOM05D004061 ORTHO05D004693 3.4e-63 245.7 206 61.2
CDE04G1398 Ceratophyllum demersum HOM05D004061 ORTHO05D004693 4.5e-63 245.4 201 55.7
MBI05_g22082_MAGBIO Magnolia biondii HOM05D004061 ORTHO05D004693 9.9e-63 244.2 214 57.5
Nn2g12823 Nelumbo nucifera HOM05D004061 ORTHO05D004693 1.3e-62 243.8 224 53.1
arahy.Tifrunner.gnm1.ann1.6R95LH Arachis hypogaea HOM05D004061 ORTHO05D004693 1.7e-62 243.4 233 53.6
PSO339G1720 Papaver somniferum HOM05D004061 ORTHO05D004693 1.7e-62 243.4 218 56.9
PSO384G5009 Papaver somniferum HOM05D004061 ORTHO05D004693 2.2e-62 243.0 214 57.0
Glyma.10G046900 Glycine max HOM05D004061 ORTHO05D004693 8.4e-62 241.1 219 56.2
Lj2C103T21 Lonicera japonica HOM05D004061 ORTHO05D004693 2.4e-61 239.6 213 56.8
PSO699G0012 Papaver somniferum HOM05D004061 ORTHO05D004693 3.2e-61 239.2 225 52.0
Phvul.001G172800 Phaseolus vulgaris HOM05D004061 ORTHO05D004693 3.2e-61 239.2 222 53.2
ATR0594G174 Amborella trichopoda HOM05D004061 ORTHO05D004693 4.2e-61 238.8 210 54.8
Cpa.g.sc114.23 Carica papaya HOM05D004061 ORTHO05D004693 7.1e-61 238.0 218 56.9
TWI74G1169 Tripterygium wilfordii HOM05D004061 ORTHO05D004693 7.1e-61 238.0 222 55.9
HPP92_006587 Vanilla planifolia HOM05D004061 ORTHO05D004693 1.2e-60 237.3 209 54.1
CARHR163390 Cardamine hirsuta HOM05D004061 ORTHO05D004693 1.6e-60 236.9 221 57.0
CDE07G0262 Ceratophyllum demersum HOM05D004061 ORTHO05D004693 2.1e-60 236.5 193 56.5
Nn2g10562 Nelumbo nucifera HOM05D004061 ORTHO05D004693 2.7e-60 236.1 206 54.9
SGA_v2.0_scaffold35G14186 Striga asiatica HOM05D004061 ORTHO05D004693 3.5e-60 235.7 220 54.1
Gohir.A01G218200 Gossypium hirsutum HOM05D004061 ORTHO05D004693 6.0e-60 235.0 206 58.3
arahy.Tifrunner.gnm1.ann1.H9GTJP Arachis hypogaea HOM05D004061 ORTHO05D004693 7.9e-60 234.6 251 49.8
Carub.0005s2006 Capsella rubella HOM05D004061 ORTHO05D004693 1.0e-59 234.2 222 55.9
Aa31LG10G9640 Aethionema arabicum HOM05D004061 ORTHO05D004693 1.3e-59 233.8 211 56.4
Phvul.007G161100 Phaseolus vulgaris HOM05D004061 ORTHO05D004693 1.3e-59 233.8 221 53.8
AT3G53490 Arabidopsis thaliana HOM05D004061 ORTHO05D004693 1.8e-59 233.4 211 55.5
unitig_578.g16044 Utricularia gibba HOM05D004061 ORTHO05D004693 1.8e-59 233.4 269 48.3
Sabra16G0089600 Salix brachista HOM05D004061 ORTHO05D004693 2.3e-59 233.0 251 49.4
Lj5g0017469 Lotus japonicus HOM05D004061 ORTHO05D004693 3.9e-59 232.3 213 52.6
C06p21460 Brassica napus HOM05D004061 ORTHO05D004693 5.1e-59 231.9 213 58.7
Gohir.D01G207100 Gossypium hirsutum HOM05D004061 ORTHO05D004693 5.1e-59 231.9 234 53.8
Sp5g08850 Schrenkiella parvula HOM05D004061 ORTHO05D004693 5.1e-59 231.9 211 55.5
Sed0004085 Sechium edule HOM05D004061 ORTHO05D004693 5.1e-59 231.9 195 57.4
THA.LOC104806513 Tarenaya hassleriana HOM05D004061 ORTHO05D004693 5.1e-59 231.9 222 53.2
A07p21670 Brassica napus HOM05D004061 ORTHO05D004693 1.5e-58 230.3 211 55.9
MD04G1110000 Malus domestica HOM05D004061 ORTHO05D004693 1.5e-58 230.3 222 54.1
Os03g0282800 Oryza sativa ssp. japonica HOM05D004061 ORTHO05D004693 2.5e-58 229.6 206 53.4
Thhalv10010698m.g Eutrema salsugineum HOM05D004061 ORTHO05D004693 3.3e-58 229.2 210 56.2
Aqoxy4G03101 Aquilegia oxysepala HOM05D004061 ORTHO05D004693 4.3e-58 228.8 205 54.1
BcaC08g44627 Brassica carinata HOM05D004061 ORTHO05D004693 5.6e-58 228.4 213 58.2
BolC6t37328H Brassica oleracea HOM05D004061 ORTHO05D004693 7.4e-58 228.0 213 58.2
BraA07t29848Z Brassica rapa HOM05D004061 ORTHO05D004693 1.3e-57 227.3 211 55.9
Gorai.002G252200 Gossypium raimondii HOM05D004061 ORTHO05D004693 2.1e-57 226.5 234 53.0
Gorai.001G248900 Gossypium raimondii HOM05D004061 ORTHO05D004693 2.8e-57 226.1 231 54.1
FvH4_6g14800 Fragaria vesca HOM05D004061 ORTHO05D004693 1.1e-56 224.2 230 52.2
FAN14G1560 Fragaria x ananassa HOM05D004061 ORTHO05D004693 1.1e-56 224.2 230 52.2
Prupe.6G245800 Prunus persica HOM05D004061 ORTHO05D004693 1.1e-56 224.2 230 51.3
AL5G34410 Arabidopsis lyrata HOM05D004061 ORTHO05D004693 1.4e-56 223.8 211 54.0
Sed0004679 Sechium edule HOM05D004061 ORTHO05D004693 1.4e-56 223.8 220 52.7
HPP92_015408 Vanilla planifolia HOM05D004061 ORTHO05D004693 2.4e-56 223.0 223 52.0
Dinv35674 Davidia involucrata HOM05D004061 ORTHO05D004693 1.2e-55 220.7 189 59.8
Gohir.D13G097300 Gossypium hirsutum HOM05D004061 ORTHO05D004693 2.0e-55 219.9 231 53.2
RcHm_v2.0_Chr3g0468021 Rosa chinensis HOM05D004061 ORTHO05D004693 2.0e-55 219.9 230 51.3
EL10Ac7g17278 Beta vulgaris HOM05D004061 ORTHO05D004693 3.4e-55 219.2 221 53.8
AUR62044395 Chenopodium quinoa HOM05D004061 ORTHO05D004693 7.6e-55 218.0 212 54.2
Dinv35675 Davidia involucrata HOM05D004061 ORTHO05D004693 1.7e-54 216.9 160 67.5
FAN05G3362 Fragaria x ananassa HOM05D004061 ORTHO05D004693 2.9e-54 216.1 230 50.9
Gohir.A13G095435 Gossypium hirsutum HOM05D004061 ORTHO05D004693 6.4e-54 214.9 229 52.4
MELO3C003083.2 Cucumis melo HOM05D004061 ORTHO05D004693 8.4e-54 214.5 197 54.8
CsaV3_4G024510 Cucumis sativus L. HOM05D004061 ORTHO05D004693 8.4e-54 214.5 213 52.6
FAN02G3315 Fragaria x ananassa HOM05D004061 ORTHO05D004693 1.9e-53 213.4 230 51.3
Hund12072 Selenicereus undatus HOM05D004061 ORTHO05D004693 1.9e-53 213.4 222 54.1
PGR004G1528 Punica granatum HOM05D004061 ORTHO05D004693 2.4e-53 213.0 209 50.7
Lalb_Chr01g0019101 Lupinus albus HOM05D004061 ORTHO05D004693 5.5e-53 211.8 229 49.8
TPR.G7552 Trifolium pratense HOM05D004061 ORTHO05D004693 1.3e-51 207.2 194 50.0
Dinv37231 Davidia involucrata HOM05D004061 ORTHO05D004693 1.8e-51 206.8 185 57.8
Medtr1g067320 Medicago truncatula HOM05D004061 ORTHO05D004693 1.8e-51 206.8 221 46.6
SHI12648 Sapria himalayana HOM05D004061 ORTHO05D004693 1.8e-51 206.8 207 52.7
Aa31LG10G9670 Aethionema arabicum HOM05D004061 ORTHO05D004693 1.3e-49 200.7 188 54.8
Oeu049603.1 Olea europaea HOM05D004061 ORTHO05D004693 1.3e-49 200.7 131 71.8
Pp3c2_4500 Physcomitrium patens HOM05D004061 ORTHO05D004693 1.6e-49 200.3 195 52.3
Atru.chr8.2505 Acer truncatum HOM05D004061 ORTHO05D004693 2.1e-49 199.9 222 50.5
VMungo0720G0415 Vigna mungo HOM05D004061 ORTHO05D004693 3.7e-49 199.1 269 42.0
Ca_11436_v3 Cicer arietinum L. HOM05D004061 ORTHO05D004693 6.2e-49 198.4 206 46.6
Carub.0006s0148 Capsella rubella HOM05D004061 ORTHO05D004693 1.8e-48 196.8 227 46.7
Sp6g39850 Schrenkiella parvula HOM05D004061 ORTHO05D004693 5.3e-48 195.3 212 48.6
Psat6g069360 Pisum sativum HOM05D004061 ORTHO05D004693 1.2e-47 194.1 193 46.6
AT5G02720 Arabidopsis thaliana HOM05D004061 ORTHO05D004693 3.4e-47 192.6 224 45.1
A10p32990 Brassica napus HOM05D004061 ORTHO05D004693 7.6e-47 191.4 231 45.9
C04p39050 Brassica napus HOM05D004061 ORTHO05D004693 6.5e-46 188.3 212 48.6
BcaNung03280 Brassica carinata HOM05D004061 ORTHO05D004693 1.1e-45 187.6 222 47.7
BolC4t25479H Brassica oleracea HOM05D004061 ORTHO05D004693 1.1e-45 187.6 212 48.1
BraA10t45336Z Brassica rapa HOM05D004061 ORTHO05D004693 1.4e-45 187.2 206 47.6
HPP92_026988 Vanilla planifolia HOM05D004061 ORTHO05D004693 1.4e-45 187.2 199 49.2
BcaC02g09159 Brassica carinata HOM05D004061 ORTHO05D004693 2.5e-45 186.4 211 47.9
BolC9t60131H Brassica oleracea HOM05D004061 ORTHO05D004693 5.5e-45 185.3 222 47.3
Pp3c17_20730 Physcomitrium patens HOM05D004061 ORTHO05D004693 9.3e-45 184.5 197 46.7
Pp3c17_20731 Physcomitrium patens HOM05D004061 ORTHO05D004693 9.3e-45 184.5 197 46.7
SMO164G0167 Selaginella moellendorffii HOM05D004061 ORTHO05D004693 1.2e-44 184.1 197 48.2
THA.LOC104816298 Tarenaya hassleriana HOM05D004061 ORTHO05D004693 1.5e-42 177.2 196 46.4
Ah.08g212360 Amaranthus hybridus HOM05D004061 ORTHO05D004693 1.9e-42 176.8 201 48.8
A04p06100 Brassica napus HOM05D004061 ORTHO05D004693 1.9e-42 176.8 219 45.2
BraA04t16312Z Brassica rapa HOM05D004061 ORTHO05D004693 7.4e-42 174.9 219 44.7
PSO675G5312 Papaver somniferum HOM05D004061 ORTHO05D004693 2.8e-41 172.9 204 46.1
AagrBONN_evm.TU.Sc2ySwM_117.2779 Anthoceros agrestis HOM05D004061 ORTHO05D004693 7.6e-39 164.9 215 41.9
Aqoxy4G03086 Aquilegia oxysepala HOM05D003496 ORTHO05D003909 6.5e-38 161.8 191 45.5
COL.COLO4_10313 Corchorus olitorius HOM05D004061 ORTHO05D004693 7.2e-37 158.3 139 57.6
Mapoly0179s0007 Marchantia polymorpha HOM05D004061 ORTHO05D004693 7.9e-36 154.8 252 38.1
BcaB02g08525 Brassica carinata HOM05D004061 ORTHO05D004693 1.9e-34 150.2 158 50.6
AUR62042140 Chenopodium quinoa HOM05D004061 ORTHO05D004693 4.8e-33 145.6 137 53.3
ATR0594G139 Amborella trichopoda HOM05D004061 ORTHO05D004693 1.8e-32 143.7 173 42.8
C09p73960 Brassica napus HOM05D004061 ORTHO05D004693 2.0e-31 140.2 219 40.2
BcaC06g32007 Brassica carinata HOM05D004061 ORTHO05D004693 1.0e-30 137.9 213 40.8
SEGI_28610 Sequoiadendron giganteum HOM05D004061 ORTHO05D004693 1.7e-30 137.1 140 48.6
Thhalv10016063m.g Eutrema salsugineum HOM05D004061 ORTHO05D004693 5.5e-29 132.1 143 47.6
AL6G11960 Arabidopsis lyrata HOM05D004061 ORTHO05D004693 1.2e-28 131.0 143 48.3
CBR_g49836 Chara braunii HOM05D006172 ORTHO05D004693 2.5e-21 106.7 134 47.0
ATR0594G136 Amborella trichopoda HOM05D004061 ORTHO05D004693 1.2e-20 104.4 149 36.9
Zm00001eb397300 Zea mays HOM05D004061 ORTHO05D004693 2.0e-18 97.1 109 47.7
BolC3t12673H Brassica oleracea HOM05D004061 ORTHO05D004693 4.5e-15 85.9 110 40.9
vmacro08682 Vaccinium macrocarpon HOM05D004061 ORTHO05D004693 5.0e-14 82.4 70 57.1
BcaB02g07781 Brassica carinata HOM05D004061 ORTHO05D004693 1.5e-13 80.9 70 57.1
C03p01140 Brassica napus HOM05D004061 ORTHO05D004693 2.7e-12 76.6 110 37.3
Zm00001eb012900 Zea mays HOM05D004061 ORTHO05D004693 8.0e-12 75.1 74 51.4
AUR62041005 Chenopodium quinoa HOM05D004061 ORTHO05D004693 3.0e-11 73.2 60 56.7
CARHR210670 Cardamine hirsuta HOM05D004061 ORTHO05D004693 7.5e-10 68.6 59 52.5
HPP92_026989 Vanilla planifolia HOM05D004061 ORTHO05D004693 7.5e-10 68.6 73 52.1
Zm00001eb131400 Zea mays HOM05D004061 ORTHO05D001113 1.1e-08 64.7 53 52.8
Zm00001eb346430 Zea mays HOM05D004061 ORTHO05D004693 7.0e-08 62.0 52 50.0
Zm00001eb341480 Zea mays HOM05D014943 ORTHO05D019389 3.5e-07 59.7 53 49.1
HPP92_002618 Vanilla planifolia HOM05D004289 ORTHO05D005141 7.7e-07 58.5 107 35.5
HPP92_002677 Vanilla planifolia HOM05D004289 ORTHO05D005141 7.7e-07 58.5 107 35.5
MELO3C022208.2 Cucumis melo HOM05D004289 ORTHO05D005141 1.3e-06 57.8 73 39.7
CsaV3_5G040360 Cucumis sativus L. HOM05D004289 ORTHO05D005141 1.7e-06 57.4 73 38.4
Peaxi162Scf00688g00334 Petunia axillaris HOM05D004289 ORTHO05D005141 3.8e-06 56.2 78 38.5
ClCG08G000420 Citrullus lanatus HOM05D004289 ORTHO05D005141 6.5e-06 55.5 73 37.0
CiPaw.03G018600 Carya illinoinensis HOM05D004289 ORTHO05D005141 8.5e-06 55.1 81 35.8
SalBow7G0958 Salvia bowleyana HOM05D004289 ORTHO05D005141 8.5e-06 55.1 70 38.6
VMungo0540G1552 Vigna mungo HOM05D004289 ORTHO05D005141 8.5e-06 55.1 82 34.1
GSVIVG01025943001 Vitis vinifera HOM05D004289 ORTHO05D005141 8.5e-06 55.1 99 34.3


User provided reference genes

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