Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen09g001750 Solanum pennellii HOM05D006682 ORTHO05D008627 6.4e-149 530.8 282 100.0
Solyc09g005870.1 Solanum lycopersicum HOM05D006682 ORTHO05D008627 2.7e-147 525.4 282 98.9
Solyc03g033990.1 Solanum lycopersicum HOM05D006682 ORTHO05D008627 1.5e-142 509.6 282 93.6
Sopen03g006750 Solanum pennellii HOM05D006682 ORTHO05D008627 4.5e-142 508.1 282 93.3
PGSC0003DMG400023913 Solanum tuberosum HOM05D006682 ORTHO05D008627 2.2e-141 505.8 282 95.0
PGSC0003DMG400009816 Solanum tuberosum HOM05D006682 ORTHO05D008627 2.7e-139 498.8 282 93.3
CAN.G350.11 Capsicum annuum HOM05D006682 ORTHO05D008627 1.1e-135 486.9 282 89.0
Nitab4.5_0002026g0020 Nicotiana tabacum HOM05D006682 ORTHO05D008627 1.4e-119 433.3 286 80.8
MSTRG.18416 Avicennia marina HOM05D006682 ORTHO05D008627 1.3e-80 303.9 247 66.4
Cc00_g20370 Coffea canephora HOM05D006682 ORTHO05D008627 1.3e-80 303.9 239 68.6
SalBow5G1085 Salvia bowleyana HOM05D006682 ORTHO05D008627 1.2e-78 297.4 254 63.4
SalBow8G0417 Salvia bowleyana HOM05D006682 ORTHO05D008627 2.0e-78 296.6 242 68.2
SGA_v2.0_scaffold42G16114 Striga asiatica HOM05D006682 ORTHO05D008627 4.2e-76 288.9 277 62.8
Migut.O00578 Erythranthe guttata HOM05D006682 ORTHO05D008627 5.2e-74 282.0 282 56.7
Lj1A355T5 Lonicera japonica HOM05D006682 ORTHO05D008627 2.6e-73 279.6 242 64.0
Dinv36276 Davidia involucrata HOM05D006682 ORTHO05D008627 1.3e-72 277.3 268 60.8
MD03G1024200 Malus domestica HOM05D006682 ORTHO05D008627 2.9e-72 276.2 274 59.1
FAN21G3201 Fragaria x ananassa HOM05D006682 ORTHO05D008627 4.9e-72 275.4 261 61.7
MD11G1029300 Malus domestica HOM05D006682 ORTHO05D008627 6.4e-72 275.0 248 62.9
RcHm_v2.0_Chr5g0077121 Rosa chinensis HOM05D006682 ORTHO05D008627 6.4e-72 275.0 266 62.4
Cpa.g.sc21.74 Carica papaya HOM05D006682 ORTHO05D008627 8.3e-72 274.6 240 63.3
FAN11G1823 Fragaria x ananassa HOM05D006682 ORTHO05D008627 1.1e-71 274.2 259 61.4
Prupe.6G023600 Prunus persica HOM05D006682 ORTHO05D008627 1.4e-71 273.9 223 68.2
Ciclev10012386m.g Citrus clementina HOM05D006682 ORTHO05D008627 1.8e-71 273.5 259 60.6
Gohir.A01G228400 Gossypium hirsutum HOM05D006682 ORTHO05D008627 2.4e-71 273.1 256 60.2
Manes.06G166600 Manihot esculenta HOM05D006682 ORTHO05D008627 2.4e-71 273.1 264 60.6
PGR102G2323 Punica granatum HOM05D006682 ORTHO05D008627 2.4e-71 273.1 270 58.9
COL.COLO4_14494 Corchorus olitorius HOM05D006682 ORTHO05D008627 3.2e-71 272.7 241 63.5
QL01p005270 Quercus lobata HOM05D006682 ORTHO05D008627 3.2e-71 272.7 201 72.1
FAN25G2895 Fragaria x ananassa HOM05D006682 ORTHO05D008627 4.1e-71 272.3 259 61.0
SGA_v2.0_scaffold4G02325 Striga asiatica HOM05D006682 ORTHO05D008627 5.4e-71 271.9 274 59.9
FvH4_3g43060 Fragaria vesca HOM05D006682 ORTHO05D008627 7.0e-71 271.6 265 60.0
CiPaw.13G163300 Carya illinoinensis HOM05D006682 ORTHO05D008627 9.2e-71 271.2 263 59.3
Thecc.05G010600 Theobroma cacao HOM05D006682 ORTHO05D008627 9.2e-71 271.2 265 60.0
CSS0008647 Camellia sinensis var. sinensis HOM05D006682 ORTHO05D008627 1.6e-70 270.4 236 64.8
Cpa.g.sc12.111 Carica papaya HOM05D006682 ORTHO05D008627 1.6e-70 270.4 257 60.3
FAN16G2773 Fragaria x ananassa HOM05D006682 ORTHO05D008627 1.6e-70 270.4 257 61.1
Gohir.D01G218300 Gossypium hirsutum HOM05D006682 ORTHO05D008627 1.6e-70 270.4 258 60.5
Gorai.002G265000 Gossypium raimondii HOM05D006682 ORTHO05D008627 1.6e-70 270.4 258 60.5
Hma1.2p1_0401F.1_g144700 Hydrangea macrophylla HOM05D006682 ORTHO05D008627 1.6e-70 270.4 194 72.2
EL10Ac3g05849 Beta vulgaris HOM05D006682 ORTHO05D008627 7.8e-70 268.1 255 58.8
Haze_23101 Corylus avellana HOM05D006682 ORTHO05D008627 7.8e-70 268.1 261 61.7
Rhsim13G0223700 Rhododendron simsii HOM05D006682 ORTHO05D008627 1.0e-69 267.7 228 64.5
Duzib128G1702 Durio zibethinus HOM05D006682 ORTHO05D008627 1.3e-69 267.3 239 62.3
Sp5g10480 Schrenkiella parvula HOM05D006682 ORTHO05D008627 2.3e-69 266.5 245 60.8
Aqoxy2G00055 Aquilegia oxysepala HOM05D006682 ORTHO05D008627 2.9e-69 266.2 223 65.9
arahy.Tifrunner.gnm1.ann1.1N3H6Z Arachis hypogaea HOM05D006682 ORTHO05D008627 1.1e-68 264.2 206 66.0
Nn3g18894 Nelumbo nucifera HOM05D006682 ORTHO05D008627 1.1e-68 264.2 209 67.9
THA.LOC104807019 Tarenaya hassleriana HOM05D006682 ORTHO05D008627 1.1e-68 264.2 221 65.2
MBI13_g31544_MAGBIO Magnolia biondii HOM05D006682 ORTHO05D008627 1.5e-68 263.8 238 62.6
Aa31sc655G20 Aethionema arabicum HOM05D006682 ORTHO05D008627 2.5e-68 263.1 198 70.2
Cfa009742 Carpinus fangiana HOM05D006682 ORTHO05D008627 3.3e-68 262.7 206 68.0
Sc16g0009700 Simmondsia chinensis HOM05D006682 ORTHO05D008627 4.3e-68 262.3 204 66.7
CARHR161420 Cardamine hirsuta HOM05D006682 ORTHO05D008627 5.6e-68 261.9 232 61.6
Eucgr.B03679 Eucalyptus grandis HOM05D006682 ORTHO05D008627 9.5e-68 261.2 260 58.8
Ah.13g066750 Amaranthus hybridus HOM05D006682 ORTHO05D008627 1.6e-67 260.4 197 66.5
A09p44960 Brassica napus HOM05D006682 ORTHO05D008627 1.6e-67 260.4 211 66.8
BraA09t39955Z Brassica rapa HOM05D006682 ORTHO05D008627 1.6e-67 260.4 211 66.8
ECA233G5908 Erigeron canadensis HOM05D006682 ORTHO05D008627 1.6e-67 260.4 197 66.5
arahy.Tifrunner.gnm1.ann1.11YZMF Arachis hypogaea HOM05D006682 ORTHO05D008627 2.1e-67 260.0 254 56.7
BcaB01g00416 Brassica carinata HOM05D006682 ORTHO05D008627 2.1e-67 260.0 222 64.0
C08p27040 Brassica napus HOM05D006682 ORTHO05D008627 2.1e-67 260.0 198 70.7
TAR623G0396 Trochodendron aralioides HOM05D006682 ORTHO05D008627 2.1e-67 260.0 205 69.3
Thhalv10010653m.g Eutrema salsugineum HOM05D006682 ORTHO05D008627 2.8e-67 259.6 239 60.3
TAR623G0191 Trochodendron aralioides HOM05D006682 ORTHO05D008627 3.6e-67 259.2 205 68.8
AL5G32250 Arabidopsis lyrata HOM05D006682 ORTHO05D008627 4.7e-67 258.8 197 69.5
Lsat_1_v5_gn_8_74980 Lactuca sativa HOM05D006682 ORTHO05D008627 4.7e-67 258.8 232 61.6
Lj3g0017048 Lotus japonicus HOM05D006682 ORTHO05D008627 4.7e-67 258.8 270 55.2
AT3G51790 Arabidopsis thaliana HOM05D006682 ORTHO05D008627 6.2e-67 258.5 223 63.7
BcaB01g00476 Brassica carinata HOM05D006682 ORTHO05D008627 6.2e-67 258.5 197 70.1
BolC8t50319H Brassica oleracea HOM05D006682 ORTHO05D008627 6.2e-67 258.5 197 70.1
Sabra03G0151700 Salix brachista HOM05D006682 ORTHO05D008627 8.0e-67 258.1 272 55.9
TWI38G0692 Tripterygium wilfordii HOM05D006682 ORTHO05D008627 8.0e-67 258.1 279 55.9
Glyma.12G056800 Glycine max HOM05D006682 ORTHO05D008627 4.0e-66 255.8 239 58.6
ClCG03G013350 Citrullus lanatus HOM05D006682 ORTHO05D008627 5.2e-66 255.4 245 58.4
Lalb_Chr08g0245621 Lupinus albus HOM05D006682 ORTHO05D008627 6.8e-66 255.0 205 64.9
Potri.003G205200 Populus trichocarpa HOM05D006682 ORTHO05D008627 1.5e-65 253.8 265 56.2
Actinidia16314 Actinidia chinensis HOM05D006682 ORTHO05D008627 3.4e-65 252.7 273 53.8
Phvul.011G058400 Phaseolus vulgaris HOM05D006682 ORTHO05D008627 3.4e-65 252.7 196 67.3
Medtr4g065610 Medicago truncatula HOM05D006682 ORTHO05D008627 9.8e-65 251.1 280 52.1
VMungo1127G1130 Vigna mungo HOM05D006682 ORTHO05D008627 9.8e-65 251.1 279 54.8
CANSAT80G0450 Cannabis sativa HOM05D006682 ORTHO05D008627 1.3e-64 250.8 195 66.2
Sed0028089 Sechium edule HOM05D006682 ORTHO05D008627 1.3e-64 250.8 238 58.4
Glyma.11G132200 Glycine max HOM05D006682 ORTHO05D008627 2.2e-64 250.0 197 66.5
SHI11277 Sapria himalayana HOM05D006682 ORTHO05D008627 8.3e-64 248.1 221 61.5
CDE03G0115 Ceratophyllum demersum HOM05D006682 ORTHO05D008627 1.1e-63 247.7 218 60.1
Manes.14G001136 Manihot esculenta HOM05D006682 ORTHO05D008627 2.4e-63 246.5 183 69.4
CsaV3_1G042700 Cucumis sativus L. HOM05D006682 ORTHO05D008627 5.4e-63 245.4 208 63.0
CDE04G1557 Ceratophyllum demersum HOM05D006682 ORTHO05D008627 9.2e-63 244.6 216 60.6
MELO3C015204.2 Cucumis melo HOM05D006682 ORTHO05D008627 2.7e-62 243.0 233 57.9
Psat7g213040 Pisum sativum HOM05D006682 ORTHO05D008627 6.0e-62 241.9 257 56.0
HPP92_017841 Vanilla planifolia HOM05D006682 ORTHO05D008627 7.8e-62 241.5 220 62.7
DCAR_014742 Daucus carota HOM05D006682 ORTHO05D008627 1.7e-61 240.4 172 69.8
Ca_20573_v3 Cicer arietinum L. HOM05D006682 ORTHO05D008627 3.0e-61 239.6 247 53.8
Ca_30508_v3 Cicer arietinum L. HOM05D006682 ORTHO05D008627 3.0e-61 239.6 247 53.8
ATR0605G320 Amborella trichopoda HOM05D006682 ORTHO05D008627 6.6e-61 238.4 246 56.5
Os10g0545800 Oryza sativa ssp. japonica HOM05D006682 ORTHO05D008627 4.7e-59 232.3 241 55.2
Zm00001eb394030 Zea mays HOM05D006682 ORTHO05D008627 1.1e-58 231.1 247 52.6
Zm00001eb022720 Zea mays HOM05D006682 ORTHO05D008627 1.8e-58 230.3 229 54.6
AUR62015492 Chenopodium quinoa HOM05D006682 ORTHO05D008627 4.0e-58 229.2 225 57.8
PSO339G5979 Papaver somniferum HOM05D006682 ORTHO05D008627 8.9e-58 228.0 247 51.8
TPR.G35025 Trifolium pratense HOM05D006682 ORTHO05D008627 4.4e-57 225.7 242 53.3
PSO384G2735 Papaver somniferum HOM05D006682 ORTHO05D008627 9.8e-57 224.6 248 51.6
Lj3P268T21 Lonicera japonica HOM05D006682 ORTHO05D008627 3.7e-56 222.6 165 72.1
unitig_26.g10134 Utricularia gibba HOM05D006682 ORTHO05D008627 3.2e-55 219.5 261 52.1
Pp3c14_20080 Physcomitrium patens HOM05D006682 ORTHO05D008627 5.1e-53 212.2 266 47.7
SEGI_12993 Sequoiadendron giganteum HOM05D006682 ORTHO05D008627 2.8e-51 206.5 183 56.8
Mapoly0003s0021 Marchantia polymorpha HOM05D006682 ORTHO05D008627 1.8e-50 203.8 183 56.3
AUR62002207 Chenopodium quinoa HOM05D006072 ORTHO05D007363 4.0e-50 202.6 142 71.8
Nitab4.5_0000492g0110 Nicotiana tabacum HOM05D006682 ORTHO05D008627 6.4e-48 195.3 124 84.7
Psat7g244600 Pisum sativum HOM05D006682 ORTHO05D008627 7.8e-46 188.3 195 55.9
HanXRQChr17g0534121 Helianthus annuus HOM05D006682 ORTHO05D008627 2.6e-41 173.3 185 54.6
GSVIVG01025303001 Vitis vinifera HOM05D006682 ORTHO05D008627 1.9e-23 114.0 104 57.7
Peaxi162Scf00029g00296 Petunia axillaris HOM05D006682 ORTHO05D008627 3.9e-21 106.3 84 72.6
Carub.0005s1814 Capsella rubella HOM05D006682 ORTHO05D008627 6.7e-21 105.5 110 53.6
EL10Ac6g14324 Beta vulgaris HOM05D006682 ORTHO05D007363 6.9e-18 95.5 71 66.2
CBR_g49935 Chara braunii HOM05D000019 ORTHO05D000048 4.9e-16 89.4 118 49.2
CBR_g49937 Chara braunii HOM05D000019 ORTHO05D000002 2.3e-13 80.5 74 45.9
MBI13_g31542_MAGBIO Magnolia biondii HOM05D006682 ORTHO05D008627 3.0e-13 80.1 71 57.7
Actinidia06890 Actinidia chinensis HOM05D006682 ORTHO05D054450 4.2e-07 59.7 65 49.2
Aqoxy4G00577 Aquilegia oxysepala HOM05D006682 ORTHO05D008627 5.5e-07 59.3 44 65.9
MBI13_g31543_MAGBIO Magnolia biondii HOM05D006682 ORTHO05D008627 2.1e-06 57.4 104 42.3
DCAR_003545 Daucus carota HOM05D048291 ORTHO05D175544 7.9e-06 55.5 117 32.5


User provided reference genes

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