Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen09g001590 Solanum pennellii HOM05D004804 ORTHO05D005882 4.8e-171 604.4 299 100.0
Solyc09g005700.3 Solanum lycopersicum HOM05D004804 ORTHO05D005882 3.2e-154 548.5 281 97.2
Nitab4.5_0002995g0070 Nicotiana tabacum HOM05D004804 ORTHO05D005882 3.3e-135 485.3 284 84.5
Peaxi162Scf00039g00093 Petunia axillaris HOM05D004804 ORTHO05D005882 2.1e-134 482.6 281 86.5
Nitab4.5_0004851g0050 Nicotiana tabacum HOM05D004804 ORTHO05D005882 6.0e-121 438.0 396 60.1
Nitab4.5_0005039g0030 Nicotiana tabacum HOM05D004804 ORTHO05D005882 1.7e-120 436.4 300 76.0
Oeu029811.2 Olea europaea HOM05D004804 ORTHO05D005882 1.7e-120 436.4 284 76.4
Gohir.D04G118600 Gossypium hirsutum HOM05D004804 ORTHO05D005882 1.5e-119 433.3 281 75.4
Gohir.A04G079400 Gossypium hirsutum HOM05D004804 ORTHO05D005882 3.6e-118 428.7 281 74.7
Gorai.009G423800 Gossypium raimondii HOM05D004804 ORTHO05D005882 3.6e-118 428.7 282 75.2
MD12G1136700 Malus domestica HOM05D004804 ORTHO05D005882 4.8e-118 428.3 281 74.4
CAN.G125.11 Capsicum annuum HOM05D004804 ORTHO05D005882 6.2e-118 427.9 224 90.2
Actinidia05292 Actinidia chinensis HOM05D004804 ORTHO05D005882 2.4e-117 426.0 294 73.5
RcHm_v2.0_Chr3g0467571 Rosa chinensis HOM05D004804 ORTHO05D005882 5.3e-117 424.9 281 73.3
CSS0039312 Camellia sinensis var. sinensis HOM05D004804 ORTHO05D001149 6.9e-117 424.5 284 74.3
COL.COLO4_14869 Corchorus olitorius HOM05D004804 ORTHO05D005882 1.5e-116 423.3 281 75.4
MD04G1119400 Malus domestica HOM05D004804 ORTHO05D005882 7.6e-116 421.0 282 73.4
Haze_20724 Corylus avellana HOM05D004804 ORTHO05D005882 9.9e-116 420.6 287 71.8
Thecc.05G045900 Theobroma cacao HOM05D004804 ORTHO05D005882 2.2e-115 419.5 281 74.7
FvH4_6g14490 Fragaria vesca HOM05D004804 ORTHO05D005882 4.9e-115 418.3 281 71.9
SGA_v2.0_scaffold126G33837 Striga asiatica HOM05D004804 ORTHO05D005882 4.9e-115 418.3 287 71.8
CiPaw.09G187800 Carya illinoinensis HOM05D004804 ORTHO05D005882 2.4e-114 416.0 286 71.7
FAN02G1589 Fragaria x ananassa HOM05D004804 ORTHO05D005882 2.4e-114 416.0 282 72.7
Dinv37213 Davidia involucrata HOM05D004804 ORTHO05D005882 3.2e-114 415.6 281 72.2
QL07p046693 Quercus lobata HOM05D004804 ORTHO05D005882 3.2e-114 415.6 286 72.0
Cfa017439 Carpinus fangiana HOM05D004804 ORTHO05D005882 9.3e-114 414.1 290 71.0
Ciclev10012025m.g Citrus clementina HOM05D004804 ORTHO05D005882 2.1e-113 412.9 282 71.6
MSTRG.5692 Avicennia marina HOM05D004804 ORTHO05D005882 2.7e-113 412.5 287 72.1
CANSAT80G2153 Cannabis sativa HOM05D004804 ORTHO05D005882 2.7e-113 412.5 289 70.6
Duzib093G1125 Durio zibethinus HOM05D004804 ORTHO05D005882 4.6e-113 411.8 281 73.7
TAR623G1260 Trochodendron aralioides HOM05D004804 ORTHO05D005882 1.0e-112 410.6 281 70.5
FAN09G0808 Fragaria x ananassa HOM05D004804 ORTHO05D005882 2.3e-112 409.5 288 71.9
Atru.chr8.1921 Acer truncatum HOM05D004804 ORTHO05D005882 3.0e-112 409.1 283 71.0
Hma1.2p1_1481F.1_g286070 Hydrangea macrophylla HOM05D004804 ORTHO05D005882 3.0e-112 409.1 228 82.9
SalBow4G1685 Salvia bowleyana HOM05D004804 ORTHO05D005882 3.0e-112 409.1 289 70.9
Nn2g12889 Nelumbo nucifera HOM05D004804 ORTHO05D005882 5.1e-112 408.3 281 70.1
Sed0001519 Sechium edule HOM05D004804 ORTHO05D005882 5.1e-112 408.3 286 68.9
GSVIVG01025612001 Vitis vinifera HOM05D004804 ORTHO05D005882 1.1e-111 407.1 224 83.9
Rhsim05G0187300 Rhododendron simsii HOM05D004804 ORTHO05D005882 9.6e-111 404.1 282 70.2
FAN14G5408 Fragaria x ananassa HOM05D004804 ORTHO05D005882 2.1e-110 402.9 273 71.4
PGR004G0439 Punica granatum HOM05D004804 ORTHO05D005882 2.1e-110 402.9 288 69.8
SalBow1G1981 Salvia bowleyana HOM05D004804 ORTHO05D005882 1.1e-109 400.6 281 70.5
PSO339G6548 Papaver somniferum HOM05D004804 ORTHO05D005882 2.4e-109 399.4 282 68.4
Sc01g0003910 Simmondsia chinensis HOM05D004804 ORTHO05D005882 3.1e-109 399.1 283 68.9
CsaV3_4G024670 Cucumis sativus L. HOM05D004804 ORTHO05D005882 9.0e-109 397.5 281 68.0
PSO384G4865 Papaver somniferum HOM05D004804 ORTHO05D005882 1.2e-108 397.1 284 69.0
Manes.08G076545 Manihot esculenta HOM05D004804 ORTHO05D005882 3.4e-108 395.6 287 67.6
TWI53G1005 Tripterygium wilfordii HOM05D004804 ORTHO05D005882 4.5e-108 395.2 292 68.5
ClCG04G008480 Citrullus lanatus HOM05D004804 ORTHO05D005882 5.8e-108 394.8 283 68.2
arahy.Tifrunner.gnm1.ann1.EYL599 Arachis hypogaea HOM05D004804 ORTHO05D005882 9.9e-108 394.0 281 65.5
Migut.L01624 Erythranthe guttata HOM05D004804 ORTHO05D005882 9.9e-108 394.0 284 69.4
Eucgr.K03171 Eucalyptus grandis HOM05D004804 ORTHO05D005882 1.3e-107 393.7 293 68.9
Lj2A100T74 Lonicera japonica HOM05D004804 ORTHO05D005882 1.3e-107 393.7 240 77.5
Migut.J00372 Erythranthe guttata HOM05D004804 ORTHO05D005882 2.2e-107 392.9 285 70.2
Lalb_Chr20g0113121 Lupinus albus HOM05D004804 ORTHO05D005882 4.9e-107 391.7 283 66.4
Glyma.19G174300 Glycine max HOM05D004804 ORTHO05D005882 8.4e-107 391.0 282 67.0
Lalb_Chr25g0289471 Lupinus albus HOM05D004804 ORTHO05D005882 1.4e-106 390.2 283 65.4
Aqoxy4G03017 Aquilegia oxysepala HOM05D004804 ORTHO05D005882 1.9e-106 389.8 288 67.4
Cc06_g03070 Coffea canephora HOM05D004804 ORTHO05D005882 1.9e-106 389.8 304 67.1
Ah.10g030750 Amaranthus hybridus HOM05D004804 ORTHO05D005882 2.4e-106 389.4 233 78.1
Lsat_1_v5_gn_2_111181 Lactuca sativa HOM05D004804 ORTHO05D005882 2.4e-106 389.4 284 65.1
Hund13338 Selenicereus undatus HOM05D004804 ORTHO05D005882 2.4e-106 389.4 232 76.7
Potri.016G120900 Populus trichocarpa HOM05D004804 ORTHO05D005882 5.5e-106 388.3 287 67.9
TPR.G21455 Trifolium pratense HOM05D004804 ORTHO05D005882 5.5e-106 388.3 282 65.6
Medtr7g100345 Medicago truncatula HOM05D004804 ORTHO05D005882 7.1e-106 387.9 288 64.6
ECA238G1409 Erigeron canadensis HOM05D004804 ORTHO05D005882 9.3e-106 387.5 284 66.2
Glyma.03G173400 Glycine max HOM05D004804 ORTHO05D005882 2.7e-105 386.0 282 66.0
MELO3C003100.2 Cucumis melo HOM05D004804 ORTHO05D005882 6.0e-105 384.8 318 62.6
unitig_27.g24899 Utricularia gibba HOM05D002116 ORTHO05D005882 6.0e-105 384.8 285 66.3
EL10Ac2g02842 Beta vulgaris HOM05D004804 ORTHO05D005882 7.9e-105 384.4 273 70.3
AUR62037218 Chenopodium quinoa HOM05D004804 ORTHO05D005882 7.9e-105 384.4 280 67.9
A05p08530 Brassica napus HOM05D004804 ORTHO05D005882 2.3e-104 382.9 281 68.0
BraA05t19821Z Brassica rapa HOM05D004804 ORTHO05D005882 3.0e-104 382.5 281 68.0
Potri.006G102700 Populus trichocarpa HOM05D004804 ORTHO05D005882 3.0e-104 382.5 285 68.8
Phvul.001G170900 Phaseolus vulgaris HOM05D004804 ORTHO05D005882 3.9e-104 382.1 281 65.1
AUR62026834 Chenopodium quinoa HOM05D004804 ORTHO05D005882 5.1e-104 381.7 280 67.5
Psat3g121680 Pisum sativum HOM05D004804 ORTHO05D005882 1.5e-103 380.2 286 64.0
AT3G53580 Arabidopsis thaliana HOM05D004804 ORTHO05D005882 1.9e-103 379.8 282 66.7
C04p10610 Brassica napus HOM05D004804 ORTHO05D005882 4.3e-103 378.6 284 66.5
BolC4t22652H Brassica oleracea HOM05D004804 ORTHO05D005882 4.3e-103 378.6 284 66.5
Ca_07739_v3 Cicer arietinum L. HOM05D004804 ORTHO05D005882 7.4e-103 377.9 289 64.7
VMungo1383G1812 Vigna mungo HOM05D004804 ORTHO05D005882 7.4e-103 377.9 282 64.2
AL5G34510 Arabidopsis lyrata HOM05D004804 ORTHO05D005882 9.6e-103 377.5 282 66.0
DCAR_009258 Daucus carota HOM05D004804 ORTHO05D005882 9.6e-103 377.5 282 66.7
Ca_08795_v3 Cicer arietinum L. HOM05D004804 ORTHO05D005882 2.1e-102 376.3 281 65.1
Prupe.6G249100 Prunus persica HOM05D004804 ORTHO05D005882 3.7e-102 375.6 256 71.5
Thhalv10016845m.g Eutrema salsugineum HOM05D004804 ORTHO05D005882 8.2e-102 374.4 281 65.8
THA.LOC104806587 Tarenaya hassleriana HOM05D004804 ORTHO05D005882 8.2e-102 374.4 282 66.0
Aa31LG5G22830 Aethionema arabicum HOM05D004804 ORTHO05D005882 1.4e-101 373.6 282 66.0
Actinidia19758 Actinidia chinensis HOM05D004804 ORTHO05D001149 2.4e-101 372.9 284 70.4
Lj1g0023900 Lotus japonicus HOM05D004804 ORTHO05D005882 2.4e-101 372.9 284 64.8
Sp4g19750 Schrenkiella parvula HOM05D004804 ORTHO05D005882 2.4e-101 372.9 282 66.0
Sp5g08760 Schrenkiella parvula HOM05D004804 ORTHO05D005882 3.1e-101 372.5 282 67.0
BcaB02g07773 Brassica carinata HOM05D004804 ORTHO05D005882 5.3e-101 371.7 285 66.3
BraA09t40124Z Brassica rapa HOM05D004804 ORTHO05D005882 1.5e-100 370.2 284 66.2
CARHR163490 Cardamine hirsuta HOM05D004804 ORTHO05D005882 1.5e-100 370.2 234 73.1
Carub.0005s2015 Capsella rubella HOM05D004804 ORTHO05D005882 2.0e-100 369.8 231 74.9
Thhalv10010477m.g Eutrema salsugineum HOM05D004804 ORTHO05D005882 2.0e-100 369.8 281 65.1
BcaB01g00261 Brassica carinata HOM05D004804 ORTHO05D005882 1.0e-99 367.5 294 63.6
HanXRQChr14g0453791 Helianthus annuus HOM05D004804 ORTHO05D005882 1.7e-99 366.7 306 60.1
A09p46600 Brassica napus HOM05D004804 ORTHO05D005882 2.9e-99 365.9 282 66.0
BolC6t37342H Brassica oleracea HOM05D004804 ORTHO05D005882 2.9e-99 365.9 284 65.8
A07p21740 Brassica napus HOM05D004804 ORTHO05D005882 8.4e-99 364.4 284 64.8
BcaC08g44637 Brassica carinata HOM05D004804 ORTHO05D005882 1.4e-98 363.6 284 65.5
C06p21540 Brassica napus HOM05D004804 ORTHO05D005882 1.4e-98 363.6 284 65.5
BraA07t29856Z Brassica rapa HOM05D004804 ORTHO05D005882 1.6e-97 360.1 286 65.4
BcaNung07017 Brassica carinata HOM05D004804 ORTHO05D005882 2.1e-97 359.8 298 62.4
CDE08G0350 Ceratophyllum demersum HOM05D004804 ORTHO05D005882 5.1e-96 355.1 266 66.2
C08p28920 Brassica napus HOM05D004804 ORTHO05D005882 8.7e-96 354.4 283 64.7
Zm00001eb028810 Zea mays HOM05D004804 ORTHO05D005882 5.7e-95 351.7 273 61.2
Zm00001eb136710 Zea mays HOM05D004804 ORTHO05D005882 3.7e-94 349.0 229 69.9
ATR0033G037 Amborella trichopoda HOM05D004804 ORTHO05D005882 8.2e-94 347.8 270 62.2
Cpa.g.c31068.3 Carica papaya HOM05D004804 ORTHO05D005882 1.4e-93 347.1 259 66.8
HPP92_019459 Vanilla planifolia HOM05D004804 ORTHO05D005882 5.0e-91 338.6 280 60.4
vmacro20115 Vaccinium macrocarpon HOM05D004804 ORTHO05D005882 9.4e-90 334.3 237 69.6
Sabra06G0079000 Salix brachista HOM05D004804 ORTHO05D005882 1.6e-89 333.6 188 80.9
SMO118G0282 Selaginella moellendorffii HOM05D004804 ORTHO05D005882 2.1e-81 306.6 215 67.4
AagrBONN_evm.TU.Sc2ySwM_228.1472 Anthoceros agrestis HOM05D004804 ORTHO05D005882 5.1e-80 302.0 200 68.5
BcaC07g39720 Brassica carinata HOM05D004804 ORTHO05D005882 9.7e-79 297.7 285 57.5
AUR62038459 Chenopodium quinoa HOM05D004804 ORTHO05D005882 1.4e-74 283.9 162 78.4
Mapoly0001s0200 Marchantia polymorpha HOM05D004804 ORTHO05D005882 2.5e-74 283.1 246 57.7
MD07G1084600 Malus domestica HOM05D004804 ORTHO05D005882 6.1e-73 278.5 159 77.4
Cre05.g237400 Chlamydomonas reinhardtii HOM05D004804 ORTHO05D005882 2.0e-68 263.5 202 62.9
BolC8t50494H Brassica oleracea HOM05D004804 ORTHO05D005882 3.5e-68 262.7 248 58.5
BcaNung07160 Brassica carinata HOM05D004804 ORTHO05D005882 8.5e-67 258.1 285 53.3
Pp3c10_3520 Physcomitrium patens HOM05D004804 ORTHO05D005882 9.4e-66 254.6 202 59.4
MCO16G320 Micromonas commoda HOM05D004804 ORTHO05D005882 2.8e-62 243.0 211 55.0
SMO116G0240 Selaginella moellendorffii HOM05D004804 ORTHO05D005882 4.5e-60 235.7 191 57.6
FvH4_5g27660 Fragaria vesca HOM05D004804 ORTHO05D005882 1.4e-56 224.2 131 74.0
Medtr7g072350 Medicago truncatula HOM05D004804 ORTHO05D005882 1.8e-56 223.8 207 52.7
PRCOL_00004448 Prasinoderma coloniale HOM05D004804 ORTHO05D005882 3.7e-54 216.1 209 53.1
AUR62014235 Chenopodium quinoa HOM05D004804 ORTHO05D005882 1.2e-52 211.1 188 58.5
BcaC05g25676 Brassica carinata HOM05D004804 ORTHO05D005882 1.4e-48 197.6 148 64.2
BcaC03g18267 Brassica carinata HOM05D004804 ORTHO05D005882 1.7e-43 180.6 148 61.5
FAN18G1921 Fragaria x ananassa HOM05D004804 ORTHO05D005882 2.3e-43 180.3 145 59.3
BcaC03g18268 Brassica carinata HOM05D004804 ORTHO05D005882 2.8e-41 173.3 148 60.8
SEGI_18757 Sequoiadendron giganteum HOM05D004804 ORTHO05D005882 2.2e-38 163.7 153 54.2
SEGI_29945 Sequoiadendron giganteum HOM05D004804 ORTHO05D005882 1.9e-37 160.6 109 68.8
BcaC01g02299 Brassica carinata HOM05D004804 ORTHO05D005882 3.9e-35 152.9 148 52.0
Cpa.g.c30481.1 Carica papaya HOM05D004804 ORTHO05D005882 6.2e-33 145.6 84 82.1
Atru.chr5.1411 Acer truncatum HOM05D004804 ORTHO05D005882 6.0e-20 102.4 57 77.2
MSTRG.19109 Avicennia marina HOM05D004804 ORTHO05D005882 6.0e-20 102.4 112 52.7
C03p66890 Brassica napus HOM05D004804 ORTHO05D005882 1.4e-16 91.3 65 64.6
BolC3t18959H Brassica oleracea HOM05D004804 ORTHO05D005882 1.4e-16 91.3 65 64.6
BolC5t30247H Brassica oleracea HOM05D003490 ORTHO05D039708 3.2e-13 80.1 46 69.6
C03p66880 Brassica napus HOM05D004804 ORTHO05D005882 7.1e-13 79.0 46 69.6
MD07G1085800 Malus domestica HOM05D004804 ORTHO05D005882 9.2e-13 78.6 43 76.7
BolC3t18958H Brassica oleracea HOM05D004804 ORTHO05D005882 1.2e-12 78.2 45 71.1
FAN13G1509 Fragaria x ananassa HOM05D004804 ORTHO05D022561 1.6e-12 77.8 41 78.0
Rhsim01G0214400 Rhododendron simsii HOM05D004804 ORTHO05D000007 3.0e-11 73.6 35 82.9
SGA_v2.0_scaffold594G53100 Striga asiatica HOM05D004804 ORTHO05D005882 2.1e-09 67.4 57 57.9
Oeu030496.1 Olea europaea HOM05D004804 ORTHO05D005882 2.4e-08 63.9 95 48.4
CBR_g29560 Chara braunii HOM05D002780 ORTHO05D005882 6.4e-06 55.8 45 51.1


User provided reference genes

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