Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen09g001490 Solanum pennellii HOM05D004149 ORTHO05D005028 1.2e-116 423.3 228 100.0
PGSC0003DMG400004449 Solanum tuberosum HOM05D004149 ORTHO05D005028 1.7e-112 409.5 229 97.4
CAN.G740.4 Capsicum annuum HOM05D004149 ORTHO05D005028 1.1e-106 390.2 229 90.4
Nitab4.5_0002020g0030 Nicotiana tabacum HOM05D004149 ORTHO05D005028 1.4e-106 389.8 228 91.2
Nitab4.5_0000261g0010 Nicotiana tabacum HOM05D004149 ORTHO05D005028 9.3e-106 387.1 229 90.0
GSVIVG01011172001 Vitis vinifera HOM05D004149 ORTHO05D005028 1.6e-86 323.2 227 74.0
CSS0009567 Camellia sinensis var. sinensis HOM05D004149 ORTHO05D005028 3.7e-86 322.0 230 73.9
Hma1.2p1_0479F.1_g161390 Hydrangea macrophylla HOM05D004149 ORTHO05D005028 1.1e-85 320.5 230 74.8
Dinv14509 Davidia involucrata HOM05D004149 ORTHO05D005028 1.8e-85 319.7 231 74.5
Cc06_g01230 Coffea canephora HOM05D004149 ORTHO05D005028 2.4e-85 319.3 233 70.4
SGA_v2.0_scaffold75G25021 Striga asiatica HOM05D004149 ORTHO05D005028 5.3e-85 318.2 237 70.5
Haze_21017 Corylus avellana HOM05D004149 ORTHO05D005028 2.9e-83 312.4 232 72.4
QL07p035253 Quercus lobata HOM05D004149 ORTHO05D005028 4.9e-83 311.6 232 65.1
Cfa017194 Carpinus fangiana HOM05D004149 ORTHO05D005028 8.4e-83 310.8 232 72.4
Actinidia11575 Actinidia chinensis HOM05D004149 ORTHO05D005028 2.5e-82 309.3 227 76.2
DCAR_018696 Daucus carota HOM05D004149 ORTHO05D005028 7.1e-82 307.8 233 70.8
Migut.J00152 Erythranthe guttata HOM05D004149 ORTHO05D005028 7.1e-82 307.8 226 71.7
unitig_578.g15899 Utricularia gibba HOM05D004149 ORTHO05D005028 1.2e-81 307.0 233 64.8
Lj3A951T30 Lonicera japonica HOM05D004149 ORTHO05D005028 2.7e-81 305.8 263 60.5
CiPaw.09G210500 Carya illinoinensis HOM05D004149 ORTHO05D005028 3.5e-81 305.4 232 65.9
Nn2g10866 Nelumbo nucifera HOM05D004149 ORTHO05D005028 4.6e-81 305.1 231 69.7
TAR633G0450 Trochodendron aralioides HOM05D004149 ORTHO05D005028 4.6e-81 305.1 231 71.9
Lsat_1_v5_gn_5_149460 Lactuca sativa HOM05D004149 ORTHO05D005028 7.9e-81 304.3 232 64.7
Duzib168G0285 Durio zibethinus HOM05D004149 ORTHO05D005028 3.0e-80 302.4 231 71.0
Eucgr.B02246 Eucalyptus grandis HOM05D004149 ORTHO05D005028 8.7e-80 300.8 229 70.7
COL.COLO4_19178 Corchorus olitorius HOM05D004149 ORTHO05D005028 1.1e-79 300.4 212 75.0
Rhsim05G0216800 Rhododendron simsii HOM05D004149 ORTHO05D005028 3.3e-79 298.9 232 72.4
A10p15620 Brassica napus HOM05D004149 ORTHO05D005028 9.7e-79 297.4 225 64.4
BraA10t43671Z Brassica rapa HOM05D004149 ORTHO05D005028 9.7e-79 297.4 225 64.4
C03p14190 Brassica napus HOM05D004149 ORTHO05D005028 1.3e-78 297.0 225 64.9
Haze_24342 Corylus avellana HOM05D004149 ORTHO05D005028 1.3e-78 297.0 228 69.7
BcaB01g04503 Brassica carinata HOM05D004149 ORTHO05D005028 2.2e-78 296.2 222 64.0
A03p12090 Brassica napus HOM05D004149 ORTHO05D005028 3.7e-78 295.4 220 66.4
BraA03t10521Z Brassica rapa HOM05D004149 ORTHO05D005028 3.7e-78 295.4 220 66.4
Sc22g0002520 Simmondsia chinensis HOM05D004149 ORTHO05D005028 4.8e-78 295.0 228 67.5
Gorai.006G105900 Gossypium raimondii HOM05D004149 ORTHO05D005028 6.3e-78 294.7 223 70.9
Gohir.D09G089700 Gossypium hirsutum HOM05D004149 ORTHO05D005028 8.2e-78 294.3 223 70.9
arahy.Tifrunner.gnm1.ann1.CPEN6V Arachis hypogaea HOM05D004149 ORTHO05D005028 1.1e-77 293.9 231 70.6
C09p50720 Brassica napus HOM05D004149 ORTHO05D005028 1.1e-77 293.9 224 62.9
arahy.Tifrunner.gnm1.ann1.JHY1NE Arachis hypogaea HOM05D004149 ORTHO05D005028 1.4e-77 293.5 226 70.4
BolC3t13864H Brassica oleracea HOM05D004149 ORTHO05D005028 1.4e-77 293.5 225 63.1
Carub.0008s1926 Capsella rubella HOM05D004149 ORTHO05D005028 1.4e-77 293.5 222 61.7
AL8G34910 Arabidopsis lyrata HOM05D004149 ORTHO05D005028 1.8e-77 293.1 224 67.4
CARHR272500 Cardamine hirsuta HOM05D004149 ORTHO05D005028 3.1e-77 292.4 221 63.3
Thhalv10010643m.g Eutrema salsugineum HOM05D004149 ORTHO05D005028 4.1e-77 292.0 218 66.5
Thecc.09G299600 Theobroma cacao HOM05D004149 ORTHO05D005028 6.9e-77 291.2 228 68.4
Sp6g20340 Schrenkiella parvula HOM05D004149 ORTHO05D005028 9.0e-77 290.8 224 61.6
HanXRQChr13g0406611 Helianthus annuus HOM05D004149 ORTHO05D005028 1.2e-76 290.4 225 69.3
Lj3g0002740 Lotus japonicus HOM05D004149 ORTHO05D005028 1.2e-76 290.4 226 69.5
Glyma.03G056500 Glycine max HOM05D004149 ORTHO05D005028 1.5e-76 290.0 223 64.6
Gohir.A09G089600 Gossypium hirsutum HOM05D004149 ORTHO05D005028 1.5e-76 290.0 225 70.2
Prupe.6G279000 Prunus persica HOM05D004149 ORTHO05D005028 1.5e-76 290.0 238 58.8
Aqoxy4G02534 Aquilegia oxysepala HOM05D004149 ORTHO05D005028 2.6e-76 289.3 236 70.3
MELO3C009158.2 Cucumis melo HOM05D004149 ORTHO05D005028 3.4e-76 288.9 232 60.3
Phvul.010G076100 Phaseolus vulgaris HOM05D004149 ORTHO05D005028 3.4e-76 288.9 218 64.7
AT5G58640 Arabidopsis thaliana HOM05D004149 ORTHO05D005028 4.5e-76 288.5 225 67.1
Sed0021100 Sechium edule HOM05D004149 ORTHO05D005028 5.9e-76 288.1 222 64.9
BolC9t57922H Brassica oleracea HOM05D004149 ORTHO05D005028 1.0e-75 287.3 230 61.3
CsaV3_3G033680 Cucumis sativus L. HOM05D004149 ORTHO05D005028 1.3e-75 287.0 232 60.3
ClCG10G022210 Citrullus lanatus HOM05D004149 ORTHO05D005028 2.2e-75 286.2 242 59.5
Manes.01G160400 Manihot esculenta HOM05D004149 ORTHO05D005028 2.2e-75 286.2 227 70.9
LjContig00155g0022980 Lotus japonicus HOM05D004149 ORTHO05D005028 2.9e-75 285.8 219 71.2
Lalb_Chr07g0193651 Lupinus albus HOM05D004149 ORTHO05D005028 2.9e-75 285.8 229 59.8
VMungo0331G2046 Vigna mungo HOM05D004149 ORTHO05D005028 2.9e-75 285.8 221 62.0
Ciclev10029239m.g Citrus clementina HOM05D004149 ORTHO05D005028 5.0e-75 285.0 228 69.3
Thhalv10014590m.g Eutrema salsugineum HOM05D004149 ORTHO05D005028 5.0e-75 285.0 224 60.3
Potri.016G117600 Populus trichocarpa HOM05D004149 ORTHO05D005028 1.4e-74 283.5 220 61.4
Sabra16G0113700 Salix brachista HOM05D004149 ORTHO05D005028 1.9e-74 283.1 222 60.4
Ca_20283_v3 Cicer arietinum L. HOM05D004149 ORTHO05D005028 7.2e-74 281.2 225 68.4
Potri.009G047000 Populus trichocarpa HOM05D004149 ORTHO05D005028 7.2e-74 281.2 225 69.3
ECA248G2679 Erigeron canadensis HOM05D000014 ORTHO05D000093 9.4e-74 280.8 223 65.9
PGR102G2658 Punica granatum HOM05D004149 ORTHO05D005028 9.4e-74 280.8 228 68.0
TWI31G0142 Tripterygium wilfordii HOM05D004149 ORTHO05D005028 6.1e-73 278.1 232 69.0
Psat2g057600 Pisum sativum HOM05D004149 ORTHO05D005028 7.9e-73 277.7 221 70.1
TPR.G34577 Trifolium pratense HOM05D004149 ORTHO05D005028 7.9e-73 277.7 222 70.7
arahy.Tifrunner.gnm1.ann1.43A4DE Arachis hypogaea HOM05D004149 ORTHO05D005028 1.8e-72 276.6 225 69.3
Medtr5g071240 Medicago truncatula HOM05D004149 ORTHO05D005028 2.3e-72 276.2 222 69.8
AT3G47300 Arabidopsis thaliana HOM05D004149 ORTHO05D005028 3.0e-72 275.8 217 63.6
PSO339G1238 Papaver somniferum HOM05D004149 ORTHO05D005028 3.9e-72 275.4 231 61.0
Aa31LG4G16110 Aethionema arabicum HOM05D004149 ORTHO05D005028 5.1e-72 275.0 244 55.7
QL01p038648 Quercus lobata HOM05D004149 ORTHO05D005028 5.1e-72 275.0 233 67.0
MD03G1067200 Malus domestica HOM05D004149 ORTHO05D005028 6.7e-72 274.6 234 63.2
ATR0681G135 Amborella trichopoda HOM05D004149 ORTHO05D005028 1.1e-71 273.9 222 67.1
arahy.Tifrunner.gnm1.ann1.AG3942 Arachis hypogaea HOM05D004149 ORTHO05D005028 2.0e-71 273.1 225 68.4
Ah.12g058720 Amaranthus hybridus HOM05D004149 ORTHO05D005028 2.5e-71 272.7 231 64.1
AL5G26480 Arabidopsis lyrata HOM05D004149 ORTHO05D005028 2.5e-71 272.7 217 67.3
PSO384G4313 Papaver somniferum HOM05D004149 ORTHO05D005028 2.5e-71 272.7 231 60.2
Hund14286 Selenicereus undatus HOM05D004149 ORTHO05D005028 4.3e-71 271.9 235 65.1
Glyma.14G194500 Glycine max HOM05D004149 ORTHO05D005028 5.7e-71 271.6 245 65.3
Peaxi162Scf00170g00124 Petunia axillaris HOM05D004149 ORTHO05D005028 5.7e-71 271.6 146 88.4
VMungo0647G1724 Vigna mungo HOM05D004149 ORTHO05D005028 7.4e-71 271.2 247 64.4
Glyma.02G227600 Glycine max HOM05D004149 ORTHO05D005028 9.7e-71 270.8 239 64.0
Manes.09G107600 Manihot esculenta HOM05D004149 ORTHO05D005028 1.3e-70 270.4 204 66.2
Potri.001G253000 Populus trichocarpa HOM05D004149 ORTHO05D005028 1.7e-70 270.0 227 68.3
EL10Ac5g12549 Beta vulgaris HOM05D004149 ORTHO05D005028 2.2e-70 269.6 233 63.1
Prupe.6G055700 Prunus persica HOM05D004149 ORTHO05D005028 3.7e-70 268.9 226 65.5
Lalb_Chr10g0103381 Lupinus albus HOM05D004149 ORTHO05D005028 4.8e-70 268.5 231 68.8
Lalb_Chr04g0252201 Lupinus albus HOM05D004149 ORTHO05D005028 1.1e-69 267.3 216 68.5
MD12G1168700 Malus domestica HOM05D004149 ORTHO05D005028 1.4e-69 266.9 221 59.7
BcaC04g19825 Brassica carinata HOM05D004149 ORTHO05D005028 6.9e-69 264.6 177 68.9
Psat7g245760 Pisum sativum HOM05D004149 ORTHO05D005028 6.9e-69 264.6 220 69.1
TPR.G13346 Trifolium pratense HOM05D004149 ORTHO05D005028 1.2e-68 263.8 220 64.5
MD11G1071900 Malus domestica HOM05D004149 ORTHO05D005028 3.4e-68 262.3 236 62.7
Phvul.008G260400 Phaseolus vulgaris HOM05D004149 ORTHO05D005028 3.4e-68 262.3 247 61.1
Cpa.g.sc112.1 Carica papaya HOM05D004149 ORTHO05D005028 5.9e-68 261.5 172 69.8
Sp5g14550 Schrenkiella parvula HOM05D004149 ORTHO05D005028 5.9e-68 261.5 221 62.9
Medtr4g015610 Medicago truncatula HOM05D004149 ORTHO05D005028 1.3e-67 260.4 222 68.9
Atru.chr3.4194 Acer truncatum HOM05D004149 ORTHO05D005028 8.5e-67 257.7 165 70.9
RcHm_v2.0_Chr5g0070001 Rosa chinensis HOM05D004149 ORTHO05D005028 1.9e-66 256.5 223 65.0
CDE03G0191 Ceratophyllum demersum HOM05D004149 ORTHO05D005028 2.5e-66 256.1 217 65.0
Lj2C73G10 Lonicera japonica HOM05D004149 ORTHO05D005028 2.5e-66 256.1 270 52.6
FAN16G0525 Fragaria x ananassa HOM05D004149 ORTHO05D005028 4.2e-66 255.4 217 60.4
FAN25G1984 Fragaria x ananassa HOM05D004149 ORTHO05D005028 5.5e-66 255.0 219 60.7
Sabra09G0034400 Salix brachista HOM05D004149 ORTHO05D005028 1.2e-65 253.8 269 57.2
RcHm_v2.0_Chr3g0462841 Rosa chinensis HOM05D004149 ORTHO05D005028 3.6e-65 252.3 225 60.9
Cfa011711 Carpinus fangiana HOM05D004149 ORTHO05D005028 4.7e-65 251.9 170 69.4
FvH4_3g38810 Fragaria vesca HOM05D004149 ORTHO05D005028 4.7e-65 251.9 217 59.4
CDE04G2602 Ceratophyllum demersum HOM05D004149 ORTHO05D005028 1.8e-64 250.0 214 57.5
Zm00001eb368380 Zea mays HOM05D004149 ORTHO05D005028 2.8e-62 242.7 221 54.3
Os05g0467300 Oryza sativa ssp. japonica HOM05D004149 ORTHO05D005028 6.3e-62 241.5 256 55.9
Dinv14507 Davidia involucrata HOM05D011585 ORTHO05D005028 1.8e-61 240.0 142 76.8
FvH4_6g11300 Fragaria vesca HOM05D004149 ORTHO05D005028 2.4e-61 239.6 227 55.5
FAN14G0231 Fragaria x ananassa HOM05D004149 ORTHO05D005028 2.4e-61 239.6 227 55.5
FAN14G3883 Fragaria x ananassa HOM05D004149 ORTHO05D005028 2.4e-61 239.6 227 55.5
FAN05G2859 Fragaria x ananassa HOM05D004149 ORTHO05D005028 5.3e-61 238.4 227 55.5
HPP92_017934 Vanilla planifolia HOM05D004149 ORTHO05D005028 1.2e-60 237.3 246 53.3
Zm00001eb351750 Zea mays HOM05D004149 ORTHO05D005028 2.0e-60 236.5 247 55.1
FAN09G2001 Fragaria x ananassa HOM05D004149 ORTHO05D005028 1.7e-59 233.4 225 53.8
SEGI_37457 Sequoiadendron giganteum HOM05D004149 ORTHO05D005028 2.2e-59 233.0 216 57.9
Os01g0832200 Oryza sativa ssp. japonica HOM05D004149 ORTHO05D005028 2.9e-59 232.6 220 54.5
CANSAT54G2318 Cannabis sativa HOM05D004149 ORTHO05D005028 5.0e-59 231.9 254 53.1
CiPaw.14G058300 Carya illinoinensis HOM05D004149 ORTHO05D005028 5.5e-58 228.4 197 66.5
SHI31752 Sapria himalayana HOM05D004149 ORTHO05D005028 5.5e-58 228.4 239 53.6
Actinidia29092 Actinidia chinensis HOM05D004149 ORTHO05D005028 1.5e-55 220.3 170 65.9
AUR62030801 Chenopodium quinoa HOM05D004149 ORTHO05D005028 7.4e-55 218.0 243 51.4
AUR62030494 Chenopodium quinoa HOM05D004149 ORTHO05D005028 8.2e-54 214.5 147 68.0
Dinv03100 Davidia involucrata HOM05D004149 ORTHO05D005028 5.3e-53 211.8 141 69.5
MBI15_g14842_MAGBIO Magnolia biondii HOM05D004149 ORTHO05D005028 4.5e-52 208.8 143 67.1
Solyc09g005590.3 Solanum lycopersicum HOM05D004149 ORTHO05D005028 2.5e-50 203.0 98 99.0
FAN11G2604 Fragaria x ananassa HOM05D004149 ORTHO05D005028 1.8e-48 196.8 266 43.2
Ca_05615_v3 Cicer arietinum L. HOM05D004149 ORTHO05D005028 2.2e-46 189.9 131 67.2
Ciclev10013383m.g Citrus clementina HOM05D004149 ORTHO05D005028 1.4e-45 187.2 148 58.8
CSS0016200 Camellia sinensis var. sinensis HOM05D004149 ORTHO05D005028 1.8e-45 186.8 128 70.3
Carub.0005s1339 Capsella rubella HOM05D004149 ORTHO05D005028 4.1e-45 185.7 127 68.5
FAN21G1905 Fragaria x ananassa HOM05D004149 ORTHO05D005028 5.4e-45 185.3 130 65.4
Psat7g245800 Pisum sativum HOM05D004149 ORTHO05D005028 2.2e-43 179.9 124 68.5
SMO358G0328 Selaginella moellendorffii HOM05D004149 ORTHO05D005028 2.3e-40 169.9 156 50.6
Solyc09g005580.4 Solanum lycopersicum HOM05D004149 ORTHO05D005028 4.5e-36 155.6 96 100.0
vmacro20289 Vaccinium macrocarpon HOM05D004149 ORTHO05D005028 2.9e-35 152.9 131 61.8
Atru.chr8.2258 Acer truncatum HOM05D004149 ORTHO05D005028 9.5e-34 147.9 99 67.7
FAN02G4186 Fragaria x ananassa HOM05D004149 ORTHO05D005028 1.1e-29 134.4 238 41.2
Aqoxy2G00865 Aquilegia oxysepala HOM05D004149 ORTHO05D005028 2.8e-25 119.8 182 37.9
MD03G1067500 Malus domestica HOM05D004149 ORTHO05D005028 1.4e-24 117.5 98 61.2
MD04G1155500 Malus domestica HOM05D004149 ORTHO05D005028 1.3e-22 110.9 114 50.9
Cre14.g616950 Chlamydomonas reinhardtii HOM05D004149 ORTHO05D005028 5.4e-21 105.5 145 38.6
Sed0020125 Sechium edule HOM05D004149 ORTHO05D005028 1.9e-18 97.1 223 28.7
C07p23840 Brassica napus HOM05D004149 ORTHO05D005028 6.2e-17 92.0 79 54.4
PRCOL_00001680 Prasinoderma coloniale HOM05D004149 ORTHO05D005028 8.9e-16 88.2 139 34.5
MCO12G475 Micromonas commoda HOM05D004149 ORTHO05D005028 4.4e-15 85.9 124 34.7
CBR_g34707 Chara braunii HOM05D004149 ORTHO05D005028 3.7e-14 82.8 117 34.2
MSTRG.19005 Avicennia marina HOM05D004149 ORTHO05D005028 8.3e-14 81.6 88 65.9
GSVIVG01030787001 Vitis vinifera HOM05D004149 ORTHO05D005028 3.2e-13 79.7 94 59.6
GSVIVG01000345001 Vitis vinifera HOM05D000200 ORTHO05D011629 4.6e-12 75.9 83 66.3
BcaB01g01543 Brassica carinata HOM05D004149 ORTHO05D039425 1.3e-11 74.3 80 48.8
GSVIVG01032328001 Vitis vinifera HOM05D004149 ORTHO05D005028 1.7e-11 73.9 91 58.2
BcaC02g09351 Brassica carinata HOM05D004149 ORTHO05D094654 9.5e-10 68.2 73 49.3
BcaB06g29604 Brassica carinata HOM05D004149 ORTHO05D039425 2.9e-06 56.6 56 46.4


User provided reference genes

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