Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen08g031410 Solanum pennellii HOM05D007467 ORTHO05D009441 5.1e-129 464.5 256 100.0
Solyc08g083220.1 Solanum lycopersicum HOM05D007467 ORTHO05D009441 4.5e-117 424.9 260 93.5
PGSC0003DMG400012234 Solanum tuberosum HOM05D007467 ORTHO05D009441 1.1e-75 287.3 315 65.7
CAN.G567.94 Capsicum annuum HOM05D007467 ORTHO05D009441 1.9e-75 286.6 314 65.6
Peaxi162Scf00074g00113 Petunia axillaris HOM05D007467 ORTHO05D009441 7.8e-69 264.6 334 58.4
CSS0030138 Camellia sinensis var. sinensis HOM05D007467 ORTHO05D009441 8.4e-55 218.0 331 50.2
RcHm_v2.0_Chr7g0187371 Rosa chinensis HOM05D007467 ORTHO05D009441 1.4e-54 217.2 283 55.8
Duzib205G1912 Durio zibethinus HOM05D007467 ORTHO05D009441 3.5e-53 212.6 334 48.8
Thecc.03G219300 Theobroma cacao HOM05D007467 ORTHO05D009441 1.7e-52 210.3 339 48.4
DCAR_006558 Daucus carota HOM05D007467 ORTHO05D009441 3.9e-52 209.1 304 46.1
FAN04G1879 Fragaria x ananassa HOM05D007467 ORTHO05D009441 3.9e-52 209.1 283 55.8
Manes.02G001700 Manihot esculenta HOM05D007467 ORTHO05D009441 1.5e-51 207.2 306 47.1
FAN08G2920 Fragaria x ananassa HOM05D007467 ORTHO05D009441 1.9e-51 206.8 283 54.4
FvH4_5g10770 Fragaria vesca HOM05D007467 ORTHO05D009441 5.6e-51 205.3 283 55.1
FAN18G0937 Fragaria x ananassa HOM05D007467 ORTHO05D009441 5.6e-51 205.3 283 55.1
Oeu013372.1 Olea europaea HOM05D007467 ORTHO05D009441 7.3e-51 204.9 311 49.5
Duzib084G1076 Durio zibethinus HOM05D007467 ORTHO05D009441 2.1e-50 203.4 306 45.4
MSTRG.13707 Avicennia marina HOM05D007467 ORTHO05D009441 1.8e-49 200.3 302 49.7
HanXRQChr07g0192371 Helianthus annuus HOM05D007467 ORTHO05D009441 1.8e-49 200.3 270 54.4
MD06G1120900 Malus domestica HOM05D007467 ORTHO05D009441 2.4e-49 199.9 325 48.9
FAN13G1608 Fragaria x ananassa HOM05D007467 ORTHO05D009441 4.0e-49 199.1 283 53.7
Cc08_g16860 Coffea canephora HOM05D007467 ORTHO05D009441 6.9e-49 198.4 251 55.8
Prupe.5G131500 Prunus persica HOM05D007467 ORTHO05D009441 1.2e-48 197.6 342 47.4
MD14G1137500 Malus domestica HOM05D007467 ORTHO05D009441 1.5e-48 197.2 323 42.7
Gohir.A12G240800 Gossypium hirsutum HOM05D007467 ORTHO05D009441 2.6e-48 196.4 279 47.3
Dinv18747 Davidia involucrata HOM05D007467 ORTHO05D009441 3.4e-48 196.1 246 56.1
Gohir.D12G242100 Gossypium hirsutum HOM05D007467 ORTHO05D009441 7.6e-48 194.9 279 47.0
Ciclev10020958m.g Citrus clementina HOM05D007467 ORTHO05D009441 9.9e-48 194.5 340 47.1
Atru.chr9.1852 Acer truncatum HOM05D007467 ORTHO05D009441 1.7e-47 193.7 314 48.4
Potri.001G082600 Populus trichocarpa HOM05D007467 ORTHO05D009441 2.2e-47 193.4 320 48.8
Gorai.008G259400 Gossypium raimondii HOM05D007467 ORTHO05D009441 2.9e-47 193.0 279 46.6
Lsat_1_v5_gn_6_10100 Lactuca sativa HOM05D007467 ORTHO05D009441 1.9e-46 190.3 282 47.2
QL02p027667 Quercus lobata HOM05D007467 ORTHO05D009441 4.2e-46 189.1 334 45.5
Nn1g00417 Nelumbo nucifera HOM05D007467 ORTHO05D009441 5.4e-46 188.7 311 44.1
TAR636G1420 Trochodendron aralioides HOM05D007467 ORTHO05D009441 7.1e-46 188.3 262 48.5
Sabra01G0059300 Salix brachista HOM05D007467 ORTHO05D009441 1.2e-45 187.6 330 46.1
Hma1.2p1_0456F.1_g156740 Hydrangea macrophylla HOM05D007467 ORTHO05D009441 4.6e-45 185.7 287 49.5
SGA_v2.0_scaffold267G46175 Striga asiatica HOM05D007467 ORTHO05D009441 1.3e-44 184.1 229 55.0
ECA233G1457 Erigeron canadensis HOM05D007467 ORTHO05D009441 3.9e-44 182.6 279 51.3
Oeu042839.1 Olea europaea HOM05D007467 ORTHO05D009441 8.7e-44 181.4 313 47.9
Aqoxy7G00009 Aquilegia oxysepala HOM05D007467 ORTHO05D009441 2.5e-43 179.9 274 52.2
TAR629G1879 Trochodendron aralioides HOM05D007467 ORTHO05D009441 4.3e-43 179.1 282 52.1
Nitab4.5_0008141g0040 Nicotiana tabacum HOM05D007467 ORTHO05D009441 5.6e-43 178.7 241 58.1
COL.COLO4_10812 Corchorus olitorius HOM05D007467 ORTHO05D009441 1.3e-42 177.6 204 53.4
GSVIVG01019666001 Vitis vinifera HOM05D007467 ORTHO05D009441 2.1e-42 176.8 197 62.9
Cfa011912 Carpinus fangiana HOM05D007467 ORTHO05D009441 3.6e-42 176.0 329 45.9
Lj2P155T22 Lonicera japonica HOM05D007467 ORTHO05D009441 8.1e-42 174.9 280 52.5
Sabra03G0107500 Salix brachista HOM05D007467 ORTHO05D009441 8.1e-42 174.9 316 44.9
Nitab4.5_0002720g0040 Nicotiana tabacum HOM05D007467 ORTHO05D009441 1.4e-41 174.1 241 57.3
CANSAT21G0614 Cannabis sativa HOM05D007467 ORTHO05D009441 5.3e-41 172.2 314 44.6
Haze_09186 Corylus avellana HOM05D007467 ORTHO05D009441 1.5e-40 170.6 319 45.8
CiPaw.11G111200 Carya illinoinensis HOM05D007467 ORTHO05D009441 5.8e-40 168.7 201 58.2
vmacro11497 Vaccinium macrocarpon HOM05D007467 ORTHO05D009441 1.7e-39 167.2 254 53.9
Aa31LG2G1740 Aethionema arabicum HOM05D007467 ORTHO05D009441 4.9e-39 165.6 284 46.5
Gorai.006G205400 Gossypium raimondii HOM05D007467 ORTHO05D009441 4.9e-39 165.6 275 47.3
Gohir.D09G183100 Gossypium hirsutum HOM05D007467 ORTHO05D009441 1.4e-38 164.1 275 46.9
TWI15G0957 Tripterygium wilfordii HOM05D007467 ORTHO05D009441 1.2e-37 161.0 341 37.5
TWI60G0745 Tripterygium wilfordii HOM05D007467 ORTHO05D009441 4.6e-37 159.1 340 41.5
Gohir.A09G188250 Gossypium hirsutum HOM05D007467 ORTHO05D009441 7.9e-37 158.3 250 48.8
CARHR046220 Cardamine hirsuta HOM05D007467 ORTHO05D009441 1.0e-36 157.9 251 43.4
Rhsim02G0253000 Rhododendron simsii HOM05D007467 ORTHO05D009441 2.5e-35 153.3 236 52.5
BcaC04g22507 Brassica carinata HOM05D007467 ORTHO05D009441 2.1e-34 150.2 241 48.1
Eucgr.E01052 Eucalyptus grandis HOM05D007467 ORTHO05D009441 2.1e-34 150.2 375 39.5
PSO782G5165 Papaver somniferum HOM05D007467 ORTHO05D009441 8.1e-34 148.3 284 44.7
PGR042G1595 Punica granatum HOM05D007467 ORTHO05D009441 1.8e-33 147.1 301 43.2
Carub.0002s0004 Capsella rubella HOM05D007467 ORTHO05D009441 2.0e-32 143.7 240 46.7
MBI12_g21574_MAGBIO Magnolia biondii HOM05D007467 ORTHO05D009441 5.8e-32 142.1 273 44.3
PSO478G5135 Papaver somniferum HOM05D007467 ORTHO05D009441 9.9e-32 141.4 283 40.6
Thhalv10023631m.g Eutrema salsugineum HOM05D007467 ORTHO05D009441 1.3e-31 141.0 263 36.9
Sp2g00870 Schrenkiella parvula HOM05D007467 ORTHO05D009441 2.9e-31 139.8 254 44.5
MBI04_g15581_MAGBIO Magnolia biondii HOM05D007467 ORTHO05D009441 3.8e-31 139.4 212 42.5
Potri.003G147900 Populus trichocarpa HOM05D007467 ORTHO05D009441 1.9e-30 137.1 259 47.1
Nn3g18852 Nelumbo nucifera HOM05D007467 ORTHO05D009441 2.5e-30 136.7 282 43.6
MBI04_g43054_MAGBIO Magnolia biondii HOM05D007467 ORTHO05D009441 3.2e-30 136.3 212 41.0
A09p15270 Brassica napus HOM05D007467 ORTHO05D009441 1.3e-28 131.0 241 45.6
BraA09t37173Z Brassica rapa HOM05D007467 ORTHO05D009441 1.3e-28 131.0 241 45.6
C09p18550 Brassica napus HOM05D007467 ORTHO05D009441 6.7e-28 128.6 241 44.4
BolC9t54751H Brassica oleracea HOM05D007467 ORTHO05D009441 6.7e-28 128.6 241 44.4
AT1G64690 Arabidopsis thaliana HOM05D007467 ORTHO05D009441 2.6e-24 116.7 257 40.9
Sed0003485 Sechium edule HOM05D007467 ORTHO05D009441 3.4e-24 116.3 300 40.0
CDE02G3312 Ceratophyllum demersum HOM05D007467 ORTHO05D009441 7.6e-24 115.2 255 36.5
BcaB07g31413 Brassica carinata HOM05D007467 ORTHO05D009441 1.7e-23 114.0 240 42.1
CsaV3_5G001620 Cucumis sativus L. HOM05D007467 ORTHO05D009441 2.2e-23 113.6 323 37.2
AL2G10070 Arabidopsis lyrata HOM05D007467 ORTHO05D009441 3.8e-23 112.8 244 41.0
ClCG01G001480 Citrullus lanatus HOM05D007467 ORTHO05D009441 1.2e-21 107.8 248 42.3
THA.LOC104823626 Tarenaya hassleriana HOM05D007467 ORTHO05D009441 1.2e-21 107.8 249 38.6
MELO3C005789.2 Cucumis melo HOM05D007467 ORTHO05D009441 2.7e-21 106.7 313 36.7
Oeu022032.1 Olea europaea HOM05D007467 ORTHO05D009441 6.7e-20 102.1 121 53.7
ATR0579G156 Amborella trichopoda HOM05D007467 ORTHO05D009441 8.7e-20 101.7 229 32.3
AUR62007067 Chenopodium quinoa HOM05D007467 ORTHO05D009441 1.6e-18 97.4 250 31.6
PGSC0003DMG400013732 Solanum tuberosum HOM05D007467 ORTHO05D009441 4.8e-18 95.9 133 49.6
AUR62019932 Chenopodium quinoa HOM05D007467 ORTHO05D009441 2.6e-16 90.1 225 32.9
Zm00001eb023700 Zea mays HOM05D007467 ORTHO05D009441 7.7e-16 88.6 276 32.2
EL10Ac5g12411 Beta vulgaris HOM05D007467 ORTHO05D009441 1.9e-14 84.0 179 34.6
Ah.12g053280 Amaranthus hybridus HOM05D007467 ORTHO05D009441 6.1e-13 79.0 270 30.4
Actinidia22211 Actinidia chinensis HOM05D007467 ORTHO05D009441 1.0e-12 78.2 43 86.0
CDE11G0649 Ceratophyllum demersum HOM05D007467 ORTHO05D009441 1.1e-11 74.7 221 36.7
Os10g0562600 Oryza sativa ssp. japonica HOM05D007467 ORTHO05D009441 4.1e-09 66.2 205 33.7
Gohir.D04G095900 Gossypium hirsutum HOM05D002319 ORTHO05D002374 4.5e-08 62.8 156 30.8
Gohir.A04G060700 Gossypium hirsutum HOM05D002319 ORTHO05D002374 1.3e-07 61.2 156 30.8
Gorai.009G398800 Gossypium raimondii HOM05D002319 ORTHO05D002374 1.3e-07 61.2 156 30.8
Oeu042937.1 Olea europaea HOM05D002166 ORTHO05D002634 1.7e-07 60.8 166 33.1
BcaC01g06592 Brassica carinata HOM05D002319 ORTHO05D002374 2.2e-07 60.5 113 46.9
C03p12290 Brassica napus HOM05D002319 ORTHO05D002374 2.2e-07 60.5 113 46.9
BolC3t13702H Brassica oleracea HOM05D002319 ORTHO05D002374 2.2e-07 60.5 113 46.9
ClCG00G001110 Citrullus lanatus HOM05D007467 ORTHO05D009441 2.2e-07 60.5 145 44.8
Thecc.05G097100 Theobroma cacao HOM05D002319 ORTHO05D002374 2.2e-07 60.5 156 31.4
Pp3c9_16460 Physcomitrium patens HOM05D002319 ORTHO05D002374 5.0e-07 59.3 142 31.7
HPP92_014125 Vanilla planifolia HOM05D002166 ORTHO05D002634 5.0e-07 59.3 148 43.9
Aqoxy5G02981 Aquilegia oxysepala HOM05D002319 ORTHO05D002374 6.5e-07 58.9 168 28.6
Duzib093G1299 Durio zibethinus HOM05D002319 ORTHO05D002374 6.5e-07 58.9 156 34.6
TAR636G1826 Trochodendron aralioides HOM05D002319 ORTHO05D002374 6.5e-07 58.9 152 33.6
AagrBONN_evm.TU.Sc2ySwM_369.392 Anthoceros agrestis HOM05D002166 ORTHO05D002374 1.1e-06 58.2 127 42.5
MSTRG.15149 Avicennia marina HOM05D002166 ORTHO05D002634 1.1e-06 58.2 159 31.4
Potri.011G003200 Populus trichocarpa HOM05D002166 ORTHO05D002634 1.1e-06 58.2 138 31.9
Zm00001eb369610 Zea mays HOM05D002166 ORTHO05D002634 1.1e-06 58.2 142 32.4
BcaC05g28321 Brassica carinata HOM05D002166 ORTHO05D002634 1.4e-06 57.8 148 44.6
C05p43980 Brassica napus HOM05D002166 ORTHO05D002634 1.4e-06 57.8 148 44.6
BolC5t33116H Brassica oleracea HOM05D002166 ORTHO05D002634 1.4e-06 57.8 148 44.6
BraA03t10380Z Brassica rapa HOM05D002319 ORTHO05D002374 1.4e-06 57.8 113 52.2
Nn6g34794 Nelumbo nucifera HOM05D002319 ORTHO05D002374 1.4e-06 57.8 127 33.9
TAR629G0586 Trochodendron aralioides HOM05D002166 ORTHO05D002634 1.4e-06 57.8 117 35.9
TPR.G17198 Trifolium pratense HOM05D002319 ORTHO05D002374 1.9e-06 57.4 146 34.9
TAR623G0514 Trochodendron aralioides HOM05D002319 ORTHO05D002374 1.9e-06 57.4 117 36.8
AL6G33320 Arabidopsis lyrata HOM05D002319 ORTHO05D002374 2.5e-06 57.0 113 46.9
Sabra11G0086400 Salix brachista HOM05D002166 ORTHO05D002634 2.5e-06 57.0 141 33.3
Sc16g0006060 Simmondsia chinensis HOM05D002166 ORTHO05D002634 2.5e-06 57.0 148 35.8
QL07p038003 Quercus lobata HOM05D002319 ORTHO05D002374 3.2e-06 56.6 154 37.7
QL93p1999_0036 Quercus lobata HOM05D002319 ORTHO05D002374 3.2e-06 56.6 154 37.7
CANSAT54G0636 Cannabis sativa HOM05D002319 ORTHO05D002374 4.2e-06 56.2 131 35.1
Cfa000231 Carpinus fangiana HOM05D002166 ORTHO05D002634 4.2e-06 56.2 175 29.1
Dinv40752 Davidia involucrata HOM05D002166 ORTHO05D002634 4.2e-06 56.2 149 29.5
Glyma.07G260000 Glycine max HOM05D002166 ORTHO05D002634 4.2e-06 56.2 108 36.1
SEGI_00451 Sequoiadendron giganteum HOM05D002319 ORTHO05D002374 4.2e-06 56.2 183 39.3
SEGI_05627 Sequoiadendron giganteum HOM05D002166 ORTHO05D002634 4.2e-06 56.2 125 48.8
CARHR191240 Cardamine hirsuta HOM05D002319 ORTHO05D002374 5.5e-06 55.8 103 49.5
AUR62015775 Chenopodium quinoa HOM05D002166 ORTHO05D002634 5.5e-06 55.8 148 43.2
AUR62020445 Chenopodium quinoa HOM05D002166 ORTHO05D002634 5.5e-06 55.8 148 43.2
Ca_06318_v3 Cicer arietinum L. HOM05D002166 ORTHO05D002634 5.5e-06 55.8 151 32.5
Ca_30807_v3 Cicer arietinum L. HOM05D002166 ORTHO05D002634 5.5e-06 55.8 151 32.5
PSO017G3861 Papaver somniferum HOM05D002319 ORTHO05D002374 5.5e-06 55.8 124 34.7
PSO675G5394 Papaver somniferum HOM05D002319 ORTHO05D002374 5.5e-06 55.8 124 34.7
Potri.004G199500 Populus trichocarpa HOM05D002319 ORTHO05D002374 5.5e-06 55.8 158 29.1
PGR119G1567 Punica granatum HOM05D002319 ORTHO05D002374 5.5e-06 55.8 127 33.9
Zm00001eb150970 Zea mays HOM05D002166 ORTHO05D002634 5.5e-06 55.8 152 31.6
Aa31LG1G13240 Aethionema arabicum HOM05D002319 ORTHO05D002374 7.2e-06 55.5 57 52.6
AT5G22310 Arabidopsis thaliana HOM05D002319 ORTHO05D002374 7.2e-06 55.5 113 50.4
PGR083G0038 Punica granatum HOM05D002166 ORTHO05D002634 7.2e-06 55.5 149 34.9
Sp6g22930 Schrenkiella parvula HOM05D002319 ORTHO05D002374 7.2e-06 55.5 144 45.1
Sed0003279 Sechium edule HOM05D002166 ORTHO05D002634 7.2e-06 55.5 231 26.4
SMO367G0664 Selaginella moellendorffii HOM05D002166 ORTHO05D002374 7.2e-06 55.5 136 33.8
Sc03g0008590 Simmondsia chinensis HOM05D002166 ORTHO05D002634 7.2e-06 55.5 148 43.9
arahy.Tifrunner.gnm1.ann1.2WUV3V Arachis hypogaea HOM05D002166 ORTHO05D002634 9.4e-06 55.1 149 43.0
arahy.Tifrunner.gnm1.ann1.MVDX5J Arachis hypogaea HOM05D002166 ORTHO05D002634 9.4e-06 55.1 149 43.0
A10p18510 Brassica napus HOM05D002319 ORTHO05D002374 9.4e-06 55.1 113 36.3
BraA10t43931Z Brassica rapa HOM05D002319 ORTHO05D002374 9.4e-06 55.1 113 43.4
CDE05G0357 Ceratophyllum demersum HOM05D002166 ORTHO05D002634 9.4e-06 55.1 173 28.3
Dinv22263 Davidia involucrata HOM05D002166 ORTHO05D002634 9.4e-06 55.1 124 37.1
Gohir.A04G016800 Gossypium hirsutum HOM05D002166 ORTHO05D002634 9.4e-06 55.1 149 32.2
Manes.09G051100 Manihot esculenta HOM05D002319 ORTHO05D002374 9.4e-06 55.1 131 44.3
Pp3c18_10070 Physcomitrium patens HOM05D002166 ORTHO05D002634 9.4e-06 55.1 188 34.0
Hund01993 Selenicereus undatus HOM05D002166 ORTHO05D002634 9.4e-06 55.1 148 43.9


User provided reference genes

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