Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen08g031110 Solanum pennellii HOM05D005847 ORTHO05D007143 1.5e-311 1072.0 535 100.0
Solyc08g082880.4 Solanum lycopersicum HOM05D005847 ORTHO05D007143 3.5e-289 997.7 504 99.0
PGSC0003DMG400012250 Solanum tuberosum HOM05D005847 ORTHO05D007143 6.4e-275 950.3 518 93.1
CAN.G567.67 Capsicum annuum HOM05D005847 ORTHO05D007143 2.5e-263 911.8 504 89.9
Peaxi162Scf00074g00363 Petunia axillaris HOM05D005847 ORTHO05D007143 7.9e-249 863.6 506 87.2
Lj2A159T44 Lonicera japonica HOM05D005847 ORTHO05D007143 2.2e-235 818.9 511 78.3
Cc08_g16520 Coffea canephora HOM05D005847 ORTHO05D007143 2.2e-230 802.4 506 77.9
Actinidia22190 Actinidia chinensis HOM05D005847 ORTHO05D007143 1.5e-226 789.6 504 78.0
GSVIVG01019613001 Vitis vinifera HOM05D005847 ORTHO05D007143 2.7e-225 785.4 514 76.5
Nn8g41240 Nelumbo nucifera HOM05D005847 ORTHO05D007143 4.4e-223 778.1 505 75.6
Ciclev10019764m.g Citrus clementina HOM05D005847 ORTHO05D007143 3.5e-220 768.5 514 75.7
TAR629G2252 Trochodendron aralioides HOM05D005847 ORTHO05D007143 1.4e-216 756.5 505 74.1
Manes.01G053800 Manihot esculenta HOM05D005847 ORTHO05D007143 5.7e-215 751.1 507 72.6
Sed0023920 Sechium edule HOM05D005847 ORTHO05D007143 7.0e-213 744.2 510 72.9
Eucgr.E01030 Eucalyptus grandis HOM05D005847 ORTHO05D007143 4.5e-212 741.5 507 72.4
PGR042G1950 Punica granatum HOM05D005847 ORTHO05D007143 5.9e-212 741.1 509 73.1
MBI12_g02092_MAGBIO Magnolia biondii HOM05D005847 ORTHO05D007143 7.8e-212 740.7 511 71.4
Gohir.D12G239600 Gossypium hirsutum HOM05D005847 ORTHO05D007143 2.3e-211 739.2 506 72.7
Gorai.008G256700 Gossypium raimondii HOM05D005847 ORTHO05D007143 5.0e-211 738.0 506 72.5
DCAR_006499 Daucus carota HOM05D005847 ORTHO05D007143 8.6e-211 737.3 504 72.2
Potri.001G086800 Populus trichocarpa HOM05D005847 ORTHO05D007143 1.1e-210 736.9 508 72.4
Atru.chr9.1922 Acer truncatum HOM05D005847 ORTHO05D007143 1.5e-210 736.5 514 72.2
MD06G1113800 Malus domestica HOM05D005847 ORTHO05D007143 5.6e-210 734.6 506 72.1
Thecc.03G224700 Theobroma cacao HOM05D005847 ORTHO05D007143 5.6e-210 734.6 517 71.8
Duzib084G0923 Durio zibethinus HOM05D005847 ORTHO05D007143 1.2e-209 733.4 510 72.7
HanXRQChr13g0415001 Helianthus annuus HOM05D005847 ORTHO05D007143 2.3e-208 729.2 512 70.3
Gohir.A12G238500 Gossypium hirsutum HOM05D005847 ORTHO05D007143 3.0e-208 728.8 506 71.7
QL10p008953 Quercus lobata HOM05D005847 ORTHO05D007143 4.0e-208 728.4 510 71.8
Prupe.5G126500 Prunus persica HOM05D005847 ORTHO05D007143 6.8e-208 727.6 506 71.9
MD14G1134800 Malus domestica HOM05D005847 ORTHO05D007143 1.5e-207 726.5 506 71.1
VMungo1127G1163 Vigna mungo HOM05D005847 ORTHO05D007143 2.0e-207 726.1 519 68.6
Aqoxy3G00691 Aquilegia oxysepala HOM05D005847 ORTHO05D007143 2.6e-207 725.7 521 68.5
Psat4g194080 Pisum sativum HOM05D005847 ORTHO05D007143 4.4e-207 724.9 504 71.0
FAN08G0147 Fragaria x ananassa HOM05D005847 ORTHO05D007143 1.4e-205 719.9 508 71.7
TWI81G0154 Tripterygium wilfordii HOM05D005847 ORTHO05D007143 1.8e-205 719.5 511 69.7
Haze_09129 Corylus avellana HOM05D005847 ORTHO05D007143 3.2e-205 718.8 518 71.6
CsaV3_5G001820 Cucumis sativus L. HOM05D005847 ORTHO05D007143 9.2e-205 717.2 511 69.7
ClCG01G001660 Citrullus lanatus HOM05D005847 ORTHO05D007143 2.0e-204 716.1 566 65.9
Hund18289 Selenicereus undatus HOM05D005847 ORTHO05D007143 2.0e-204 716.1 506 69.4
Aqoxy5G04298 Aquilegia oxysepala HOM05D005847 ORTHO05D007143 4.6e-204 714.9 520 67.3
FAN13G1107 Fragaria x ananassa HOM05D005847 ORTHO05D007143 5.9e-204 714.5 508 71.7
Cfa011951 Carpinus fangiana HOM05D005847 ORTHO05D007143 7.8e-204 714.1 515 71.3
Phvul.011G200000 Phaseolus vulgaris HOM05D005847 ORTHO05D007143 7.8e-204 714.1 519 67.8
EL10Ac5g12470 Beta vulgaris HOM05D005847 ORTHO05D007143 3.9e-203 711.8 506 68.4
RcHm_v2.0_Chr2g0164461 Rosa chinensis HOM05D005847 ORTHO05D007143 5.0e-203 711.4 509 70.5
CANSAT21G1860 Cannabis sativa HOM05D005847 ORTHO05D007143 6.6e-203 711.1 515 68.5
FvH4_5g11440 Fragaria vesca HOM05D005847 ORTHO05D007143 6.6e-203 711.1 508 71.3
Ca_24013_v3 Cicer arietinum L. HOM05D005847 ORTHO05D007143 1.5e-202 709.9 510 69.8
Sc01g0010500 Simmondsia chinensis HOM05D005847 ORTHO05D007143 3.3e-202 708.8 508 69.3
MELO3C005771.2 Cucumis melo HOM05D005847 ORTHO05D007143 5.6e-202 708.0 511 68.7
FAN04G0204 Fragaria x ananassa HOM05D005847 ORTHO05D007143 7.3e-202 707.6 508 70.9
FAN18G1068 Fragaria x ananassa HOM05D005847 ORTHO05D007143 1.6e-201 706.4 508 70.5
CiPaw.11G115200 Carya illinoinensis HOM05D005847 ORTHO05D007143 1.8e-200 703.0 515 70.1
Medtr8g040700 Medicago truncatula HOM05D005847 ORTHO05D007143 3.1e-200 702.2 506 69.6
Lalb_Chr13g0298981 Lupinus albus HOM05D005847 ORTHO05D007143 6.8e-200 701.0 517 68.3
ECA240G1801 Erigeron canadensis HOM05D005847 ORTHO05D007143 1.2e-199 700.3 538 65.1
THA.LOC104809314 Tarenaya hassleriana HOM05D005847 ORTHO05D007143 8.3e-198 694.1 501 69.9
TPR.G8535 Trifolium pratense HOM05D005847 ORTHO05D007143 3.2e-197 692.2 491 70.3
COL.COLO4_10763 Corchorus olitorius HOM05D005847 ORTHO05D007143 7.0e-197 691.0 506 69.6
Glyma.13G191700 Glycine max HOM05D005847 ORTHO05D007143 1.7e-195 686.4 525 65.0
Nitab4.5_0002728g0010 Nicotiana tabacum HOM05D005847 ORTHO05D007143 3.0e-195 685.6 364 93.7
Migut.E00656 Erythranthe guttata HOM05D005847 ORTHO05D007143 4.3e-194 681.8 533 64.7
Sabra01G0063100 Salix brachista HOM05D005847 ORTHO05D007143 1.1e-189 667.2 508 67.3
Lj1g0001744 Lotus japonicus HOM05D005847 ORTHO05D007143 8.6e-187 657.5 592 60.1
ATR0757G021 Amborella trichopoda HOM05D005847 ORTHO05D007143 1.5e-186 656.8 499 66.9
CSS0040838 Camellia sinensis var. sinensis HOM05D005847 ORTHO05D007143 1.5e-186 656.8 396 80.6
SGA_v2.0_scaffold159G37696 Striga asiatica HOM05D005847 ORTHO05D007143 3.6e-185 652.1 502 64.7
vmacro11522 Vaccinium macrocarpon HOM05D005847 ORTHO05D007143 8.1e-185 651.0 553 62.4
Aa31LG2G1600 Aethionema arabicum HOM05D005847 ORTHO05D007143 2.3e-184 649.4 520 62.7
Os07g0297300 Oryza sativa ssp. japonica HOM05D005847 ORTHO05D007143 3.1e-184 649.0 530 61.1
AL2G10160 Arabidopsis lyrata HOM05D005847 ORTHO05D007143 9.9e-183 644.0 505 63.4
Zm00001eb021260 Zea mays HOM05D005847 ORTHO05D007143 1.7e-182 643.3 518 62.5
AT1G64600 Arabidopsis thaliana HOM05D005847 ORTHO05D007143 2.2e-182 642.9 503 63.6
PSO017G1852 Papaver somniferum HOM05D005847 ORTHO05D007143 9.2e-181 637.5 533 61.9
Carub.0002s0014 Capsella rubella HOM05D005847 ORTHO05D007143 5.6e-178 628.2 551 58.6
BcaB07g31478 Brassica carinata HOM05D005847 ORTHO05D007143 2.8e-177 625.9 518 61.2
Sp2g00130 Schrenkiella parvula HOM05D005847 ORTHO05D007143 3.6e-177 625.5 512 61.9
BcaC04g22588 Brassica carinata HOM05D005847 ORTHO05D007143 1.8e-176 623.2 517 60.7
C09p17640 Brassica napus HOM05D005847 ORTHO05D007143 1.8e-176 623.2 517 60.7
BolC9t54656H Brassica oleracea HOM05D005847 ORTHO05D007143 1.8e-176 623.2 517 60.7
BraA09t37102Z Brassica rapa HOM05D005847 ORTHO05D007143 1.8e-176 623.2 511 61.6
A09p14540 Brassica napus HOM05D005847 ORTHO05D007143 2.4e-176 622.9 511 61.6
HPP92_003273 Vanilla planifolia HOM05D005847 ORTHO05D007143 4.0e-176 622.1 516 61.4
Thhalv10023366m.g Eutrema salsugineum HOM05D005847 ORTHO05D007143 5.8e-175 618.2 557 58.5
AUR62007027 Chenopodium quinoa HOM05D005847 ORTHO05D007143 1.1e-173 614.0 466 65.9
unitig_21.g20386 Utricularia gibba HOM05D005847 ORTHO05D007143 1.1e-173 614.0 502 61.8
arahy.Tifrunner.gnm1.ann1.PR6ST2 Arachis hypogaea HOM05D005847 ORTHO05D007143 4.3e-170 602.1 464 65.7
arahy.Tifrunner.gnm1.ann1.HI9AVU Arachis hypogaea HOM05D005847 ORTHO05D007143 6.9e-168 594.7 461 65.7
Nitab4.5_0006880g0020 Nicotiana tabacum HOM05D005847 ORTHO05D007143 4.6e-164 582.0 464 69.2
Lsat_1_v5_gn_6_83620 Lactuca sativa HOM05D005847 ORTHO05D007143 9.3e-157 557.8 353 76.8
AUR62019890 Chenopodium quinoa HOM05D005847 ORTHO05D007143 2.8e-153 546.2 403 66.5
Nitab4.5_0002027g0040 Nicotiana tabacum HOM05D005847 ORTHO05D007143 1.0e-142 511.1 491 60.7
Oeu058016.1 Olea europaea HOM05D005847 ORTHO05D007143 1.0e-139 501.1 508 55.7
Rhsim02G0249100 Rhododendron simsii HOM05D005847 ORTHO05D007143 1.1e-136 491.1 380 66.3
RcHm_v2.0_Chr7g0186411 Rosa chinensis HOM05D005847 ORTHO05D007143 7.0e-120 435.3 277 78.3
Ah.12g052990 Amaranthus hybridus HOM05D005847 ORTHO05D007143 6.3e-113 412.1 546 44.7
MSTRG.26906 Avicennia marina HOM05D005847 ORTHO05D007143 1.4e-107 394.4 263 74.1
Mapoly0031s0174 Marchantia polymorpha HOM05D005847 ORTHO05D007143 3.4e-106 389.8 518 43.6
Pp3c9_6890 Physcomitrium patens HOM05D005847 ORTHO05D007143 8.6e-102 375.2 510 41.0
MSTRG.15574 Avicennia marina HOM05D005847 ORTHO05D007143 9.5e-101 371.7 260 70.8
CDE04G1283 Ceratophyllum demersum HOM05D005847 ORTHO05D007143 2.4e-96 357.1 255 71.4
SMO119G0297 Selaginella moellendorffii HOM05D005847 ORTHO05D007143 3.3e-85 320.1 552 33.9
QL10p010267 Quercus lobata HOM05D005847 ORTHO05D007143 4.6e-79 299.7 203 71.4
RcHm_v2.0_Chr7g0186431 Rosa chinensis HOM05D005847 ORTHO05D007143 1.6e-76 291.2 234 63.7
Cpa.g.sc15.20 Carica papaya HOM05D005847 ORTHO05D007143 3.6e-76 290.0 204 71.6
SHI06935 Sapria himalayana HOM05D005847 ORTHO05D007143 9.9e-74 282.0 460 41.7
Nn1g00324 Nelumbo nucifera HOM05D005847 ORTHO05D007143 1.3e-73 281.6 222 68.5
CARHR046320 Cardamine hirsuta HOM05D005847 ORTHO05D007143 4.7e-68 263.1 227 56.4
SMO115G0010 Selaginella moellendorffii HOM05D005847 ORTHO05D007143 1.4e-64 251.5 259 43.6
Aqoxy5G04303 Aquilegia oxysepala HOM05D005847 ORTHO05D007143 9.0e-59 232.3 221 58.8
AagrBONN_evm.TU.Sc2ySwM_228.3279 Anthoceros agrestis HOM05D005847 ORTHO05D007143 2.2e-57 227.6 246 46.3
SEGI_09534 Sequoiadendron giganteum HOM05D005847 ORTHO05D007143 3.0e-54 217.2 169 63.3
SMO116G0437 Selaginella moellendorffii HOM05D005847 ORTHO05D007143 2.8e-52 210.7 475 30.1
CBR_g978 Chara braunii HOM05D005847 ORTHO05D007143 2.5e-45 187.6 332 36.4
CDE04G2319 Ceratophyllum demersum HOM05D005847 ORTHO05D007143 1.6e-44 184.9 184 52.2
Cpa.g.c33268 Carica papaya HOM05D005847 ORTHO05D007143 1.8e-43 181.4 146 64.4
RcHm_v2.0_Chr7g0205571 Rosa chinensis HOM05D005847 ORTHO05D007143 4.2e-40 170.2 248 43.5
RcHm_v2.0_Chr7g0205551 Rosa chinensis HOM05D005847 ORTHO05D007143 4.0e-35 153.7 258 40.7
MCO09G139 Micromonas commoda HOM05D005847 ORTHO05D007143 5.5e-32 143.3 529 26.8
Nn1g00325 Nelumbo nucifera HOM05D005847 ORTHO05D007143 5.1e-30 136.7 117 65.0
AUR62019891 Chenopodium quinoa HOM05D005847 ORTHO05D007143 9.7e-29 132.5 112 58.0
Cpa.g.sc15.22 Carica papaya HOM05D005847 ORTHO05D007143 1.3e-28 132.1 82 75.6
Atru.chr1.1468 Acer truncatum HOM05D005847 ORTHO05D007143 1.2e-26 125.6 102 59.8
Cre05.g237600 Chlamydomonas reinhardtii HOM05D005847 ORTHO05D007143 3.4e-26 124.0 162 43.2
Os10g0520950 Oryza sativa ssp. japonica HOM05D005847 ORTHO05D007143 4.1e-19 100.5 121 47.1
QL02p028460 Quercus lobata HOM05D005847 ORTHO05D007143 5.3e-19 100.1 126 46.0
Lj3g0011757 Lotus japonicus HOM05D005847 ORTHO05D007143 9.1e-19 99.4 202 38.1
Medtr8g040720 Medicago truncatula HOM05D005847 ORTHO05D007143 3.9e-14 84.0 52 63.5
Nitab4.5_0000109g0320 Nicotiana tabacum HOM05D005847 ORTHO05D007143 8.5e-09 66.2 31 96.8
QL02p028464 Quercus lobata HOM05D005847 ORTHO05D007143 1.2e-07 62.4 75 44.0


User provided reference genes

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