Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen08g031060 Solanum pennellii HOM05D003895 ORTHO05D004723 0.0e+00 1446.4 704 100.0
Solyc08g082830.3 Solanum lycopersicum HOM05D003895 ORTHO05D004723 0.0e+00 1430.6 697 99.9
PGSC0003DMG400012128 Solanum tuberosum HOM05D003895 ORTHO05D004723 0.0e+00 1424.5 697 99.3
CAN.G567.61 Capsicum annuum HOM05D003895 ORTHO05D004723 0.0e+00 1394.4 697 96.6
Nitab4.5_0002367g0210 Nicotiana tabacum HOM05D003895 ORTHO05D004723 0.0e+00 1387.9 697 96.1
Nitab4.5_0002439g0120 Nicotiana tabacum HOM05D003895 ORTHO05D004723 0.0e+00 1382.5 697 95.6
Oeu009988.1 Olea europaea HOM05D003895 ORTHO05D004723 0.0e+00 1322.0 697 90.1
MSTRG.13762 Avicennia marina HOM05D003895 ORTHO05D004723 0.0e+00 1315.8 699 90.0
Cc05_g02370 Coffea canephora HOM05D003895 ORTHO05D004723 0.0e+00 1311.6 697 90.1
Migut.E00651 Erythranthe guttata HOM05D003895 ORTHO05D004723 0.0e+00 1311.6 696 88.9
Peaxi162Scf00074g00431 Petunia axillaris HOM05D003895 ORTHO05D004723 0.0e+00 1308.9 705 91.1
Cc08_g16460 Coffea canephora HOM05D003895 ORTHO05D004723 0.0e+00 1306.2 697 89.0
Manes.02G005900 Manihot esculenta HOM05D003895 ORTHO05D004723 0.0e+00 1301.2 703 87.6
CSS0003453 Camellia sinensis var. sinensis HOM05D003895 ORTHO05D004723 0.0e+00 1300.4 697 89.2
Cpa.g.sc15.11 Carica papaya HOM05D003895 ORTHO05D004723 0.0e+00 1296.2 708 87.9
SalBow2G2362 Salvia bowleyana HOM05D003895 ORTHO05D004723 0.0e+00 1296.2 697 88.4
Rhsim07G0079800 Rhododendron simsii HOM05D003895 ORTHO05D004723 0.0e+00 1294.6 697 89.0
HanXRQChr06g0166321 Helianthus annuus HOM05D003895 ORTHO05D004723 0.0e+00 1293.5 697 88.7
Potri.003G143700 Populus trichocarpa HOM05D003895 ORTHO05D004723 0.0e+00 1291.2 700 87.7
FvH4_5g11490 Fragaria vesca HOM05D003895 ORTHO05D004723 0.0e+00 1290.8 697 86.9
FAN08G0955 Fragaria x ananassa HOM05D003895 ORTHO05D004723 0.0e+00 1290.8 697 86.9
Gorai.004G131300 Gossypium raimondii HOM05D003895 ORTHO05D004723 0.0e+00 1290.8 701 87.2
CSS0024936 Camellia sinensis var. sinensis HOM05D003895 ORTHO05D004723 0.0e+00 1290.0 697 88.7
FAN18G2619 Fragaria x ananassa HOM05D003895 ORTHO05D004723 0.0e+00 1289.6 697 86.8
FAN18G3428 Fragaria x ananassa HOM05D003895 ORTHO05D004723 0.0e+00 1289.6 697 86.8
Thecc.03G303200 Theobroma cacao HOM05D003895 ORTHO05D004723 0.0e+00 1289.6 701 87.2
FAN04G2440 Fragaria x ananassa HOM05D003895 ORTHO05D004723 0.0e+00 1288.1 697 86.9
Potri.001G087400 Populus trichocarpa HOM05D003895 ORTHO05D004723 0.0e+00 1287.3 697 88.1
Ciclev10019024m.g Citrus clementina HOM05D003895 ORTHO05D004723 0.0e+00 1286.9 700 86.9
Gohir.D08G124600 Gossypium hirsutum HOM05D003895 ORTHO05D004723 0.0e+00 1286.9 701 87.0
Prupe.5G126000 Prunus persica HOM05D003895 ORTHO05D004723 0.0e+00 1286.6 697 87.5
ECA240G1010 Erigeron canadensis HOM05D003895 ORTHO05D004723 0.0e+00 1285.8 698 87.8
Actinidia04389 Actinidia chinensis HOM05D003895 ORTHO05D004723 0.0e+00 1284.6 697 87.9
DCAR_006502 Daucus carota HOM05D003895 ORTHO05D004723 0.0e+00 1282.7 697 87.1
CANSAT54G0301 Cannabis sativa HOM05D003895 ORTHO05D004723 0.0e+00 1282.3 697 86.7
Eucgr.E01025 Eucalyptus grandis HOM05D003895 ORTHO05D004723 0.0e+00 1281.5 701 86.6
PGR042G2513 Punica granatum HOM05D003895 ORTHO05D004723 0.0e+00 1280.8 701 85.6
HanXRQChr03g0083671 Helianthus annuus HOM05D003895 ORTHO05D004723 0.0e+00 1280.0 698 87.8
TWI60G1173 Tripterygium wilfordii HOM05D003895 ORTHO05D004723 0.0e+00 1279.6 697 87.8
Cfa011961 Carpinus fangiana HOM05D003895 ORTHO05D004723 0.0e+00 1279.2 697 87.4
Ciclev10024991m.g Citrus clementina HOM05D003895 ORTHO05D004723 0.0e+00 1278.5 700 86.4
RcHm_v2.0_Chr7g0186311 Rosa chinensis HOM05D003895 ORTHO05D004723 0.0e+00 1277.7 697 86.4
Aa31LG2G1550 Aethionema arabicum HOM05D003895 ORTHO05D004723 0.0e+00 1276.5 700 86.3
Sabra01G0063700 Salix brachista HOM05D003895 ORTHO05D004723 0.0e+00 1275.4 700 86.9
Aqoxy2G01051 Aquilegia oxysepala HOM05D003895 ORTHO05D004723 0.0e+00 1275.0 699 86.7
CiPaw.11G115900 Carya illinoinensis HOM05D003895 ORTHO05D004723 0.0e+00 1275.0 699 86.7
MELO3C005756.2 Cucumis melo HOM05D003895 ORTHO05D004723 0.0e+00 1275.0 701 86.6
Duzib068G0704 Durio zibethinus HOM05D003895 ORTHO05D004723 0.0e+00 1273.8 700 86.6
TAR629G1064 Trochodendron aralioides HOM05D003895 ORTHO05D004723 0.0e+00 1272.7 699 86.8
Oeu059576.4 Olea europaea HOM05D003895 ORTHO05D004723 0.0e+00 1271.9 756 82.3
QL02p029300 Quercus lobata HOM05D003895 ORTHO05D004723 0.0e+00 1271.5 703 86.2
MD06G1113100 Malus domestica HOM05D003895 ORTHO05D004723 0.0e+00 1269.2 697 85.9
Nn3g20296 Nelumbo nucifera HOM05D003895 ORTHO05D004723 0.0e+00 1268.8 699 86.0
MD14G1134200 Malus domestica HOM05D003895 ORTHO05D004723 0.0e+00 1268.4 697 86.2
vmacro13870 Vaccinium macrocarpon HOM05D003895 ORTHO05D004723 0.0e+00 1268.4 739 83.2
PSO170G0459 Papaver somniferum HOM05D003895 ORTHO05D004723 0.0e+00 1267.3 697 85.7
Sabra03G0104100 Salix brachista HOM05D003895 ORTHO05D004723 0.0e+00 1266.9 739 82.9
COL.COLO4_10753 Corchorus olitorius HOM05D003895 ORTHO05D004723 0.0e+00 1265.8 701 86.0
Thhalv10011266m.g Eutrema salsugineum HOM05D003895 ORTHO05D004723 0.0e+00 1264.2 700 84.4
Carub.0001s4358 Capsella rubella HOM05D003895 ORTHO05D004723 0.0e+00 1262.7 700 84.9
arahy.Tifrunner.gnm1.ann1.68E5M7 Arachis hypogaea HOM05D003895 ORTHO05D004723 0.0e+00 1261.5 694 85.4
THA.LOC104823616 Tarenaya hassleriana HOM05D003895 ORTHO05D004723 0.0e+00 1261.1 696 85.9
Sp1g40750 Schrenkiella parvula HOM05D003895 ORTHO05D004723 0.0e+00 1258.4 700 84.6
BcaC01g01456 Brassica carinata HOM05D003895 ORTHO05D004723 0.0e+00 1257.7 700 84.6
Ca_17453_v3 Cicer arietinum L. HOM05D003895 ORTHO05D004723 0.0e+00 1257.7 694 85.9
Lalb_Chr16g0390761 Lupinus albus HOM05D003895 ORTHO05D004723 0.0e+00 1257.7 694 85.9
BolC6t36080H Brassica oleracea HOM05D003895 ORTHO05D004723 0.0e+00 1256.1 700 84.1
CARHR044680 Cardamine hirsuta HOM05D003895 ORTHO05D004723 0.0e+00 1255.7 700 84.3
vmacro10679 Vaccinium macrocarpon HOM05D003895 ORTHO05D004723 0.0e+00 1255.7 744 81.7
vmacro22441 Vaccinium macrocarpon HOM05D003895 ORTHO05D004723 0.0e+00 1255.7 744 81.7
AL1G63080 Arabidopsis lyrata HOM05D003895 ORTHO05D004723 0.0e+00 1255.4 700 84.7
Hund14202 Selenicereus undatus HOM05D003895 ORTHO05D004723 0.0e+00 1255.4 697 85.5
arahy.Tifrunner.gnm1.ann1.M62N24 Arachis hypogaea HOM05D003895 ORTHO05D004723 0.0e+00 1254.6 690 85.4
BraA06t23255Z Brassica rapa HOM05D003895 ORTHO05D004723 0.0e+00 1254.6 700 84.0
GSVIVG01019608001 Vitis vinifera HOM05D003895 ORTHO05D004723 0.0e+00 1253.8 702 85.0
AT1G55090 Arabidopsis thaliana HOM05D003895 ORTHO05D004723 0.0e+00 1253.4 700 84.6
Lj4g0018300 Lotus japonicus HOM05D003895 ORTHO05D004723 0.0e+00 1253.4 694 85.6
A06p00400 Brassica napus HOM05D003895 ORTHO05D004723 0.0e+00 1253.0 700 83.9
A08p01020 Brassica napus HOM05D003895 ORTHO05D004723 0.0e+00 1253.0 700 84.1
BcaB07g33238 Brassica carinata HOM05D003895 ORTHO05D004723 0.0e+00 1251.9 700 84.3
Haze_09120 Corylus avellana HOM05D003895 ORTHO05D004723 0.0e+00 1251.9 712 85.0
C06p10070 Brassica napus HOM05D003895 ORTHO05D004723 0.0e+00 1251.5 700 84.0
BcaB04g17002 Brassica carinata HOM05D003895 ORTHO05D004723 0.0e+00 1250.7 701 84.0
BcaC08g43605 Brassica carinata HOM05D003895 ORTHO05D004723 0.0e+00 1250.7 700 84.1
Lj4g0016220 Lotus japonicus HOM05D003895 ORTHO05D004723 0.0e+00 1249.6 694 85.2
Medtr8g099885 Medicago truncatula HOM05D003895 ORTHO05D004723 0.0e+00 1247.6 694 84.7
Psat7g023560 Pisum sativum HOM05D003895 ORTHO05D004723 0.0e+00 1244.2 694 84.1
Glyma.05G219500 Glycine max HOM05D003895 ORTHO05D004723 0.0e+00 1242.6 694 84.6
Phvul.002G328900 Phaseolus vulgaris HOM05D003895 ORTHO05D004723 0.0e+00 1241.1 694 84.4
TPR.G3395 Trifolium pratense HOM05D003895 ORTHO05D004723 0.0e+00 1241.1 694 84.0
TPR.G18245 Trifolium pratense HOM05D003895 ORTHO05D004723 0.0e+00 1236.5 694 84.1
EL10Ac5g12963 Beta vulgaris HOM05D003895 ORTHO05D004723 0.0e+00 1226.5 701 82.7
ClCG01G001820 Citrullus lanatus HOM05D003895 ORTHO05D004723 0.0e+00 1223.8 799 75.7
Lj2C160T5 Lonicera japonica HOM05D003895 ORTHO05D004723 0.0e+00 1223.4 696 85.1
VMungo0251G3777 Vigna mungo HOM05D003895 ORTHO05D004723 0.0e+00 1218.4 694 83.4
BolC3t21537H Brassica oleracea HOM05D003895 ORTHO05D004723 0.0e+00 1217.6 712 81.7
C03p92220 Brassica napus HOM05D003895 ORTHO05D004723 0.0e+00 1216.1 712 81.5
BraA08t32154Z Brassica rapa HOM05D003895 ORTHO05D004723 0.0e+00 1211.4 711 81.2
Sc01g0010470 Simmondsia chinensis HOM05D003895 ORTHO05D004723 0.0e+00 1208.7 663 86.1
Lsat_1_v5_gn_6_83601 Lactuca sativa HOM05D003895 ORTHO05D004723 0.0e+00 1207.2 697 84.1
Psat7g023520 Pisum sativum HOM05D003895 ORTHO05D004723 0.0e+00 1207.2 694 81.8
AUR62015016 Chenopodium quinoa HOM05D003895 ORTHO05D004723 0.0e+00 1202.2 720 79.6
AUR62029097 Chenopodium quinoa HOM05D003895 ORTHO05D004723 0.0e+00 1202.2 699 81.3
PSO339G2482 Papaver somniferum HOM05D003895 ORTHO05D004723 0.0e+00 1191.0 697 80.3
SGA_v2.0_scaffold295G47513 Striga asiatica HOM05D003895 ORTHO05D004723 0.0e+00 1190.6 696 82.6
unitig_21.g20891 Utricularia gibba HOM05D003895 ORTHO05D004723 0.0e+00 1177.9 697 81.3
TPR.G3413 Trifolium pratense HOM05D003895 ORTHO05D004723 0.0e+00 1172.1 695 79.3
PSO017G1958 Papaver somniferum HOM05D003895 ORTHO05D004723 0.0e+00 1169.5 697 80.8
Glyma.08G025800 Glycine max HOM05D003895 ORTHO05D004723 0.0e+00 1166.4 659 84.4
CsaV3_5G001970 Cucumis sativus L. HOM05D003895 ORTHO05D004723 0.0e+00 1154.4 636 86.2
Zm00001eb094700 Zea mays HOM05D003895 ORTHO05D004723 0.0e+00 1138.6 696 77.2
MBI02_g10555_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 0.0e+00 1138.3 697 77.2
HPP92_025338 Vanilla planifolia HOM05D003895 ORTHO05D004723 0.0e+00 1131.3 694 76.9
Sed0021355 Sechium edule HOM05D003895 ORTHO05D004723 0.0e+00 1127.5 616 87.7
EL10Ac5g12472 Beta vulgaris HOM05D003895 ORTHO05D004723 0.0e+00 1119.4 696 76.1
ATR1098G082 Amborella trichopoda HOM05D003895 ORTHO05D004723 0.0e+00 1117.4 699 76.1
Hma1.2p1_1835F.1_g304665 Hydrangea macrophylla HOM05D003895 ORTHO05D004723 0.0e+00 1110.5 616 86.9
Dinv34692 Davidia involucrata HOM05D003895 ORTHO05D004723 0.0e+00 1085.1 585 89.1
SEGI_31460 Sequoiadendron giganteum HOM05D003895 ORTHO05D004723 2.4e-309 1065.1 693 73.4
Manes.02G005800 Manihot esculenta HOM05D003895 ORTHO05D004723 7.1e-306 1053.5 698 73.4
FAN13G0619 Fragaria x ananassa HOM05D003895 ORTHO05D004723 1.6e-305 1052.4 697 74.3
Ah.12g052950 Amaranthus hybridus HOM05D003895 ORTHO05D004723 1.8e-296 1022.3 715 71.6
CBR_g19728 Chara braunii HOM05D003895 ORTHO05D004723 7.6e-284 980.3 727 64.6
AUR62019884 Chenopodium quinoa HOM05D003895 ORTHO05D004723 4.2e-282 974.5 700 69.0
SMO174G0028 Selaginella moellendorffii HOM05D003895 ORTHO05D004723 8.8e-280 966.8 691 66.7
Mapoly0035s0052 Marchantia polymorpha HOM05D003895 ORTHO05D004723 5.7e-279 964.1 692 66.8
MCO17G006 Micromonas commoda HOM05D003895 ORTHO05D004723 1.8e-256 889.4 690 61.9
Pp3c17_21910 Physcomitrium patens HOM05D003895 ORTHO05D004723 2.7e-252 875.5 628 65.8
AagrBONN_evm.TU.Sc2ySwM_228.4970 Anthoceros agrestis HOM05D003895 ORTHO05D004723 7.7e-252 874.0 611 66.8
Gohir.A08G111660 Gossypium hirsutum HOM05D003895 ORTHO05D004723 5.5e-250 867.8 475 87.6
SMO358G0326 Selaginella moellendorffii HOM05D003895 ORTHO05D004723 2.1e-249 865.9 697 60.8
Os07g0167100 Oryza sativa ssp. japonica HOM05D003895 ORTHO05D004723 6.8e-248 860.9 529 77.5
PRCOL_00000896 Prasinoderma coloniale HOM05D003895 ORTHO05D004723 2.0e-236 822.8 702 58.0
Cre10.g435250 Chlamydomonas reinhardtii HOM05D003895 ORTHO05D004723 1.2e-231 807.0 783 53.9
Migut.E01630 Erythranthe guttata HOM05D003895 ORTHO05D004723 3.4e-231 805.4 502 78.3
Hma1.2p1_0077F.1_g039630 Hydrangea macrophylla HOM05D003895 ORTHO05D004723 1.4e-213 746.9 417 86.3
Cfa024512 Carpinus fangiana HOM05D003895 ORTHO05D004723 1.2e-204 717.2 701 52.2
MBI02_g43672_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 8.4e-182 641.3 422 73.9
PSO210G1536 Papaver somniferum HOM05D003895 ORTHO05D004723 9.4e-157 558.1 365 72.9
Aqoxy456s001 Aquilegia oxysepala HOM05D003895 ORTHO05D004723 1.3e-150 537.7 303 86.5
ECA246G1101 Erigeron canadensis HOM05D003895 ORTHO05D004723 8.2e-145 518.5 311 82.0
MBI05_g40947_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 1.1e-141 508.1 320 74.7
AUR62007020 Chenopodium quinoa HOM05D003895 ORTHO05D004723 1.0e-139 501.5 280 83.2
Haze_09105 Corylus avellana HOM05D003895 ORTHO05D004723 1.4e-136 491.1 349 73.9
MBI15_g06349_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 1.9e-125 454.1 316 69.0
MBI05_g43497_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 5.8e-114 416.0 293 68.6
SalBow2G1745 Salvia bowleyana HOM05D003895 ORTHO05D004723 1.9e-109 401.0 314 63.7
Gohir.A08G111640 Gossypium hirsutum HOM05D003895 ORTHO05D004723 3.6e-92 343.6 183 83.1
MBI05_g40946_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 1.5e-90 338.2 219 72.1
Psat7g023400 Pisum sativum HOM05D003895 ORTHO05D004723 1.4e-80 305.1 397 47.1
arahy.Tifrunner.gnm1.ann1.RT27P1 Arachis hypogaea HOM05D003895 ORTHO05D004723 2.2e-73 281.2 353 47.6
SalBow2G0791 Salvia bowleyana HOM05D003895 ORTHO05D004723 1.9e-72 278.1 168 75.0
BcaB04g17000 Brassica carinata HOM05D003895 ORTHO05D004723 1.3e-70 271.9 189 69.3
SalBow2G2695 Salvia bowleyana HOM05D003895 ORTHO05D004723 1.5e-66 258.5 208 61.5
BcaB04g16999 Brassica carinata HOM05D003895 ORTHO05D004723 1.7e-65 255.0 175 71.4
BcaB05g22068 Brassica carinata HOM05D003895 ORTHO05D004723 3.3e-45 187.6 101 79.2
AagrBONN_evm.TU.Sc2ySwM_228.4951 Anthoceros agrestis HOM05D003895 ORTHO05D004723 7.4e-45 186.4 219 44.3
BcaB01g00975 Brassica carinata HOM05D003895 ORTHO05D004723 6.3e-44 183.3 101 79.2
BcaB04g17001 Brassica carinata HOM05D003895 ORTHO05D004723 1.5e-42 178.7 175 54.9
DCAR_006503 Daucus carota HOM05D001368 ORTHO05D003846 7.2e-40 169.9 173 55.5
BcaB01g02352 Brassica carinata HOM05D003895 ORTHO05D004723 5.0e-33 147.1 80 77.5
Sopen06g027550 Solanum pennellii HOM05D003895 ORTHO05D004723 9.4e-32 142.9 162 53.1
BcaC01g01457 Brassica carinata HOM05D003895 ORTHO05D004723 2.7e-31 141.4 115 58.3
Nitab4.5_0000974g0050 Nicotiana tabacum HOM05D003895 ORTHO05D285369 7.7e-26 123.2 108 60.2
Solyc06g071240.3 Solanum lycopersicum HOM05D003895 ORTHO05D004723 7.2e-24 116.7 127 56.7
CARHR260480 Cardamine hirsuta HOM05D003895 ORTHO05D004723 3.6e-23 114.4 156 41.7
CARHR106400 Cardamine hirsuta HOM05D003895 ORTHO05D004723 4.7e-23 114.0 156 41.7
MBI15_g06350_MAGBIO Magnolia biondii HOM05D000011 ORTHO05D000018 6.8e-22 110.2 63 71.4
Lj4g0022111 Lotus japonicus HOM05D019175 ORTHO05D018974 7.5e-21 106.7 60 81.7
CAN.G628.62 Capsicum annuum HOM05D003895 ORTHO05D004723 9.8e-21 106.3 110 57.3
Nitab4.5_0001308g0060 Nicotiana tabacum HOM05D003895 ORTHO05D282403 2.4e-19 101.7 111 50.5
BcaB04g16998 Brassica carinata HOM05D003895 ORTHO05D004723 2.2e-17 95.1 52 76.9
Nitab4.5_0004376g0060 Nicotiana tabacum HOM05D003895 ORTHO05D286866 8.3e-12 76.6 50 78.0
Atru.chr9.1960 Acer truncatum HOM05D003895 ORTHO05D004723 3.5e-10 71.2 45 80.0
BcaC01g01459 Brassica carinata HOM05D003895 ORTHO05D004723 2.3e-09 68.6 42 66.7
BcaC01g01463 Brassica carinata HOM05D003895 ORTHO05D004723 2.9e-09 68.2 41 68.3
PGSC0003DMG400033059 Solanum tuberosum HOM05D003895 ORTHO05D004723 3.8e-09 67.8 41 73.2
Glyma.17G110701 Glycine max HOM05D003895 ORTHO05D004723 5.6e-08 63.9 34 88.2
Nitab4.5_0000050g0220 Nicotiana tabacum HOM05D003895 ORTHO05D285100 9.5e-08 63.2 44 79.5


User provided reference genes

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