Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen08g030950 Solanum pennellii HOM05D005777 ORTHO05D006854 0.0e+00 1345.5 686 100.0
Solyc08g082720.4 Solanum lycopersicum HOM05D005777 ORTHO05D006854 0.0e+00 1309.3 686 97.5
PGSC0003DMG400012134 Solanum tuberosum HOM05D005777 ORTHO05D006854 0.0e+00 1131.3 686 85.3
CAN.G567.32 Capsicum annuum HOM05D005777 ORTHO05D006854 4.4e-284 981.1 690 76.5
Nitab4.5_0002793g0030 Nicotiana tabacum HOM05D005777 ORTHO05D006854 2.7e-249 865.5 828 59.5
Peaxi162Scf00074g00526 Petunia axillaris HOM05D005777 ORTHO05D006854 7.3e-247 857.4 686 67.8
Nitab4.5_0002367g0090 Nicotiana tabacum HOM05D005777 ORTHO05D006854 2.9e-243 845.5 805 59.8
ECA240G0322 Erigeron canadensis HOM05D005777 ORTHO05D006854 1.3e-97 361.7 504 44.0
Lj8C204T6 Lonicera japonica HOM05D005777 ORTHO05D006854 6.2e-97 359.4 813 32.8
CSS0003604 Camellia sinensis var. sinensis HOM05D005777 ORTHO05D006854 1.4e-96 358.2 381 53.0
Lsat_1_v5_gn_6_83361 Lactuca sativa HOM05D005777 ORTHO05D006854 8.4e-94 349.0 459 44.7
HanXRQChr03g0083721 Helianthus annuus HOM05D005777 ORTHO05D006854 4.0e-88 330.1 385 48.1
Rhsim07G0080700 Rhododendron simsii HOM05D005777 ORTHO05D006854 9.0e-88 328.9 411 46.5
Atru.chr9.1942 Acer truncatum HOM05D005777 ORTHO05D006854 7.6e-87 325.9 469 42.2
TWI60G0567 Tripterygium wilfordii HOM05D005777 ORTHO05D006854 1.7e-86 324.7 456 43.6
TAR629G1222 Trochodendron aralioides HOM05D005777 ORTHO05D006854 2.9e-86 323.9 734 33.5
Potri.007G058050 Populus trichocarpa HOM05D005777 ORTHO05D006854 2.7e-84 317.4 446 43.5
CsaV3_5G001940 Cucumis sativus L. HOM05D005777 ORTHO05D006854 3.5e-84 317.0 360 48.9
MD06G1111700 Malus domestica HOM05D005777 ORTHO05D006854 2.2e-81 307.8 458 41.0
MELO3C033830.2 Cucumis melo HOM05D005777 ORTHO05D006854 2.8e-81 307.4 348 49.4
Cfa011969 Carpinus fangiana HOM05D005777 ORTHO05D006854 1.8e-80 304.7 561 37.3
Haze_09107 Corylus avellana HOM05D005777 ORTHO05D006854 2.4e-80 304.3 559 36.7
Prupe.5G124500 Prunus persica HOM05D005777 ORTHO05D006854 2.6e-79 300.8 347 47.0
Sed0007946 Sechium edule HOM05D005777 ORTHO05D006854 5.9e-79 299.7 513 39.6
Actinidia22740 Actinidia chinensis HOM05D005777 ORTHO05D006854 6.5e-78 296.2 470 40.6
Glyma.05G218900 Glycine max HOM05D005777 ORTHO05D006854 4.6e-76 290.0 448 42.0
Glyma.08G025000 Glycine max HOM05D005777 ORTHO05D006854 1.0e-75 288.9 452 41.8
QL02p029612 Quercus lobata HOM05D005777 ORTHO05D006854 8.8e-75 285.8 473 38.7
FvH4_5g11630 Fragaria vesca HOM05D005777 ORTHO05D006854 1.1e-74 285.4 384 43.8
FAN04G0792 Fragaria x ananassa HOM05D005777 ORTHO05D006854 1.9e-74 284.6 384 43.8
Eucgr.E00747 Eucalyptus grandis HOM05D005777 ORTHO05D006854 2.5e-74 284.3 511 37.8
RcHm_v2.0_Chr7g0186161 Rosa chinensis HOM05D005777 ORTHO05D006854 3.3e-74 283.9 382 44.2
FAN13G2465 Fragaria x ananassa HOM05D005777 ORTHO05D006854 2.2e-73 281.2 384 42.7
vmacro13879 Vaccinium macrocarpon HOM05D005777 ORTHO05D006854 2.8e-73 280.8 422 41.9
Phvul.002G300700 Phaseolus vulgaris HOM05D005777 ORTHO05D006854 8.2e-73 279.3 447 40.5
CANSAT21G0853 Cannabis sativa HOM05D005777 ORTHO05D006854 3.1e-72 277.3 487 38.2
Eucgr.E00744 Eucalyptus grandis HOM05D005777 ORTHO05D006854 1.2e-71 275.4 521 36.9
Lj4g0026879 Lotus japonicus HOM05D005777 ORTHO05D006854 2.6e-71 274.2 496 38.5
Cpa.g.sc79.3 Carica papaya HOM05D005777 ORTHO05D006854 3.4e-71 273.9 453 39.5
Nn1g00296 Nelumbo nucifera HOM05D005777 ORTHO05D006854 3.4e-71 273.9 617 32.9
Psat7g024000 Pisum sativum HOM05D005777 ORTHO05D006854 5.9e-71 273.1 351 45.9
MBI07_g24771_MAGBIO Magnolia biondii HOM05D005777 ORTHO05D006854 2.9e-70 270.8 666 32.7
Medtr8g099725 Medicago truncatula HOM05D005777 ORTHO05D006854 8.5e-70 269.2 350 46.3
Oeu055021.1 Olea europaea HOM05D005777 ORTHO05D006854 9.4e-69 265.8 696 31.9
Lalb_Chr05g0223951 Lupinus albus HOM05D005777 ORTHO05D006854 3.6e-68 263.8 404 41.3
Eucgr.E00956 Eucalyptus grandis HOM05D005777 ORTHO05D006854 1.4e-67 261.9 472 37.3
PGR042G2859 Punica granatum HOM05D005777 ORTHO05D006854 1.4e-67 261.9 457 38.1
FAN18G2480 Fragaria x ananassa HOM05D005777 ORTHO05D006854 3.3e-66 257.3 387 40.8
Cc08_g16390 Coffea canephora HOM05D005777 ORTHO05D006854 1.3e-65 255.4 244 57.0
CiPaw.11G117200 Carya illinoinensis HOM05D005777 ORTHO05D006854 1.5e-63 248.4 275 50.9
DCAR_006511 Daucus carota HOM05D005777 ORTHO05D006854 1.1e-61 242.3 503 34.6
Sabra07G0049700 Salix brachista HOM05D005777 ORTHO05D006854 6.1e-60 236.5 421 36.3
Hund14203 Selenicereus undatus HOM05D005777 ORTHO05D006854 2.0e-58 231.5 490 32.4
Migut.E01651 Erythranthe guttata HOM05D005777 ORTHO05D006854 4.4e-58 230.3 270 48.1
Migut.E00735 Erythranthe guttata HOM05D005777 ORTHO05D006854 1.4e-56 225.3 281 46.6
Manes.01G049500 Manihot esculenta HOM05D005777 ORTHO05D006854 3.1e-56 224.2 274 49.6
Aqoxy5G04312 Aquilegia oxysepala HOM05D005777 ORTHO05D006854 2.0e-55 221.5 405 36.5
PSO170G4328 Papaver somniferum HOM05D005777 ORTHO05D006854 5.9e-55 219.9 406 36.9
TPR.G3378 Trifolium pratense HOM05D005777 ORTHO05D006854 1.3e-54 218.8 457 36.8
Sc01g0010430 Simmondsia chinensis HOM05D005777 ORTHO05D006854 1.7e-54 218.4 261 47.1
Thecc.08G166000 Theobroma cacao HOM05D005777 ORTHO05D006854 1.7e-54 218.4 418 35.6
Ah.12g052840 Amaranthus hybridus HOM05D005777 ORTHO05D006854 1.1e-53 215.7 472 33.1
EL10Ac5g12951 Beta vulgaris HOM05D005777 ORTHO05D006854 3.3e-50 204.1 239 49.0
FAN08G0729 Fragaria x ananassa HOM05D005777 ORTHO05D006854 5.7e-50 203.4 357 37.5
Eucgr.E00762 Eucalyptus grandis HOM05D005777 ORTHO05D006854 1.7e-49 201.8 263 43.0
VMungo0251G0419 Vigna mungo HOM05D003100 ORTHO05D003533 2.5e-45 188.0 485 31.3
Eucgr.E00752 Eucalyptus grandis HOM05D005777 ORTHO05D006854 1.4e-43 182.2 506 31.2
Eucgr.E00939 Eucalyptus grandis HOM05D005777 ORTHO05D006854 2.3e-43 181.4 202 50.5
Gorai.005G117300 Gossypium raimondii HOM05D005777 ORTHO05D006854 1.5e-42 178.7 232 45.7
Gohir.A02G088000 Gossypium hirsutum HOM05D005777 ORTHO05D006854 2.8e-41 174.5 232 45.7
AUR62019875 Chenopodium quinoa HOM05D005777 ORTHO05D006854 6.3e-41 173.3 220 45.9
Ca_17460_v3 Cicer arietinum L. HOM05D005777 ORTHO05D006854 8.3e-41 172.9 370 35.1
ATR0602G092 Amborella trichopoda HOM05D005777 ORTHO05D006854 8.6e-38 162.9 249 39.8
HPP92_024143 Vanilla planifolia HOM05D005777 ORTHO05D006854 3.3e-37 161.0 250 40.4
FAN18G2579 Fragaria x ananassa HOM05D005777 ORTHO05D006854 2.8e-36 157.9 342 33.9
Duzib116G0305 Durio zibethinus HOM05D005777 ORTHO05D006854 6.1e-36 156.8 201 45.3
Ciclev10023874m.g Citrus clementina HOM05D005777 ORTHO05D006854 8.9e-35 152.9 161 53.4
SGA_v2.0_scaffold74G24601 Striga asiatica HOM05D005777 ORTHO05D006854 2.6e-34 151.4 258 36.4
Dinv37498 Davidia involucrata HOM05D005777 ORTHO05D006854 1.1e-32 146.0 614 27.0
GSVIVG01019597001 Vitis vinifera HOM05D005777 ORTHO05D006854 3.1e-32 144.4 129 55.0
Lsat_1_v5_gn_5_82800 Lactuca sativa HOM05D005777 ORTHO05D006854 9.2e-32 142.9 186 43.5
Eucgr.E00900 Eucalyptus grandis HOM05D005777 ORTHO05D006854 1.7e-30 138.7 175 49.1
Lsat_1_v5_gn_9_112141 Lactuca sativa HOM05D005777 ORTHO05D006854 2.9e-30 137.9 135 55.6
COL.COLO4_25066 Corchorus olitorius HOM05D000316 ORTHO05D006854 5.6e-29 133.7 201 40.3
Eucgr.E00969 Eucalyptus grandis HOM05D005777 ORTHO05D006854 5.6e-29 133.7 175 48.0
Eucgr.E00749 Eucalyptus grandis HOM05D005777 ORTHO05D006854 7.3e-29 133.3 165 47.9
Eucgr.E01013 Eucalyptus grandis HOM05D005777 ORTHO05D006854 2.8e-28 131.3 175 48.0
Ciclev10023944m.g Citrus clementina HOM05D005777 ORTHO05D006854 8.9e-27 126.3 211 36.5
Os09g0363400 Oryza sativa ssp. japonica HOM05D005777 ORTHO05D006854 1.3e-25 122.5 231 35.1
Eucgr.E00726 Eucalyptus grandis HOM05D005777 ORTHO05D006854 2.2e-25 121.7 140 50.0
AUR62007011 Chenopodium quinoa HOM05D005777 ORTHO05D006854 1.4e-24 119.0 217 38.2
Thhalv10028849m.g Eutrema salsugineum HOM05D005777 ORTHO05D006854 5.4e-24 117.1 162 45.1
THA.LOC104813047 Tarenaya hassleriana HOM05D005777 ORTHO05D006854 9.2e-24 116.3 150 48.7
BcaB01g01556 Brassica carinata HOM05D005777 ORTHO05D006854 4.6e-23 114.0 146 45.9
Eucgr.E00912 Eucalyptus grandis HOM05D005777 ORTHO05D006854 1.7e-22 112.1 107 53.3
Actinidia27306 Actinidia chinensis HOM05D005777 ORTHO05D006854 3.9e-22 110.9 71 73.2
FAN04G0565 Fragaria x ananassa HOM05D005777 ORTHO05D006854 3.9e-22 110.9 106 54.7
Eucgr.E00696 Eucalyptus grandis HOM05D005777 ORTHO05D006854 8.6e-22 109.8 148 43.9
AL6G44960 Arabidopsis lyrata HOM05D005777 ORTHO05D006854 1.9e-21 108.6 163 45.4
CDE03G0022 Ceratophyllum demersum HOM05D002476 ORTHO05D002652 1.9e-21 108.6 254 32.3
Carub.0006s2962 Capsella rubella HOM05D005777 ORTHO05D006854 3.3e-21 107.8 160 41.9
Sp6g06640 Schrenkiella parvula HOM05D005777 ORTHO05D006854 5.6e-21 107.1 163 43.6
CARHR255730 Cardamine hirsuta HOM05D005777 ORTHO05D006854 7.3e-21 106.7 166 41.6
Eucgr.E00895 Eucalyptus grandis HOM05D005777 ORTHO05D006854 7.3e-21 106.7 108 47.2
AT4G10890 Arabidopsis thaliana HOM05D005777 ORTHO05D006854 6.2e-20 103.6 147 45.6
BraA09t38398Z Brassica rapa HOM05D005777 ORTHO05D006854 1.1e-19 102.8 158 44.9
BcaC04g21086 Brassica carinata HOM05D005777 ORTHO05D006854 2.3e-19 101.7 162 41.4
C09p35860 Brassica napus HOM05D005777 ORTHO05D006854 2.6e-18 98.2 163 41.1
BolC9t56419H Brassica oleracea HOM05D005777 ORTHO05D006854 1.7e-17 95.5 148 41.9
Eucgr.E00894 Eucalyptus grandis HOM05D005777 ORTHO05D006854 2.9e-17 94.7 79 58.2
A09p28290 Brassica napus HOM05D005777 ORTHO05D006854 6.4e-17 93.6 163 38.0
Aa31LG9G11240 Aethionema arabicum HOM05D005777 ORTHO05D006854 4.1e-16 90.9 73 58.9
Eucgr.E00686 Eucalyptus grandis HOM05D005777 ORTHO05D006854 1.3e-14 85.9 100 45.0
Eucgr.H03743 Eucalyptus grandis HOM05D005777 ORTHO05D006854 7.3e-13 80.1 77 53.2
SHI06955 Sapria himalayana HOM05D005777 ORTHO05D006854 1.1e-11 76.3 90 50.0
Gohir.D02G103200 Gossypium hirsutum HOM05D005777 ORTHO05D006854 5.8e-10 70.5 116 36.2
HanXRQChr03g0083731 Helianthus annuus HOM05D005777 ORTHO05D006854 9.9e-10 69.7 82 40.2
Hma1.2p1_0338F.1_g129700 Hydrangea macrophylla HOM05D005777 ORTHO05D006854 1.7e-09 68.9 61 52.5
AagrBONN_evm.TU.Sc2ySwM_368.2767 Anthoceros agrestis HOM05D005777 ORTHO05D006854 8.3e-09 66.6 169 27.2
Lsat_1_v5_gn_3_40061 Lactuca sativa HOM05D005777 ORTHO05D006854 8.3e-09 66.6 83 43.4
QL08p034398 Quercus lobata HOM05D000176 ORTHO05D000106 2.4e-08 65.1 77 42.9
QL06p042986 Quercus lobata HOM05D000529 ORTHO05D000472 3.2e-08 64.7 77 42.9
FAN18G0036 Fragaria x ananassa HOM05D005777 ORTHO05D006854 3.9e-06 57.8 31 80.6


User provided reference genes

Program Settings