Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen08g030920 Solanum pennellii HOM05D004100 ORTHO05D004781 6.2e-91 337.4 168 100.0
Solyc08g082695.1 Solanum lycopersicum HOM05D004100 ORTHO05D004781 2.4e-66 255.8 128 99.2
CAN.G567.29 Capsicum annuum HOM05D004100 ORTHO05D004781 1.4e-34 150.2 78 96.2
SalBow1G1269 Salvia bowleyana HOM05D004100 ORTHO05D004781 1.2e-33 147.1 79 91.1
DCAR_027562 Daucus carota HOM05D004100 ORTHO05D004781 2.0e-33 146.4 78 92.3
Cc02_g07040 Coffea canephora HOM05D004100 ORTHO05D004781 4.5e-33 145.2 78 91.0
HanXRQChr07g0202251 Helianthus annuus HOM05D004100 ORTHO05D004781 4.5e-33 145.2 81 86.4
Migut.I01038 Erythranthe guttata HOM05D004100 ORTHO05D004781 1.5e-31 140.2 78 89.7
MSTRG.234 Avicennia marina HOM05D004100 ORTHO05D004781 4.2e-31 138.7 78 87.2
ECA238G3287 Erigeron canadensis HOM05D004100 ORTHO05D004781 4.2e-31 138.7 78 87.2
SalBow6G6247 Salvia bowleyana HOM05D004100 ORTHO05D004781 7.2e-31 137.9 73 90.4
Lsat_1_v5_gn_1_35860 Lactuca sativa HOM05D004100 ORTHO05D004781 9.4e-31 137.5 75 86.7
Oeu055822.1 Olea europaea HOM05D004100 ORTHO05D004781 4.7e-30 135.2 78 87.2
Migut.F01567 Erythranthe guttata HOM05D004100 ORTHO05D004781 8.0e-30 134.4 79 89.9
unitig_0.g234 Utricularia gibba HOM05D004100 ORTHO05D004781 1.0e-29 134.0 78 88.5
GSVIVG01016389001 Vitis vinifera HOM05D004100 ORTHO05D004781 1.0e-29 134.0 78 83.3
CiPaw.01G294400 Carya illinoinensis HOM05D004100 ORTHO05D004781 1.8e-29 133.3 78 85.9
CSS0048931 Camellia sinensis var. sinensis HOM05D004100 ORTHO05D004781 2.3e-29 132.9 80 78.8
Hma1.2p1_0026F.1_g016830 Hydrangea macrophylla HOM05D004100 ORTHO05D004781 5.2e-29 131.7 78 80.8
Sed0020785 Sechium edule HOM05D004100 ORTHO05D004781 6.8e-29 131.3 78 83.3
Hma1.2p1_0026F.1_g016860 Hydrangea macrophylla HOM05D004100 ORTHO05D004781 8.8e-29 131.0 78 80.8
Actinidia07713 Actinidia chinensis HOM05D004100 ORTHO05D004781 2.6e-28 129.4 80 77.5
Rhsim03G0139100 Rhododendron simsii HOM05D004100 ORTHO05D004781 3.4e-28 129.0 80 77.5
Actinidia13907 Actinidia chinensis HOM05D004100 ORTHO05D004781 4.4e-28 128.6 79 78.5
Glyma.11G226100 Glycine max HOM05D004100 ORTHO05D004781 4.4e-28 128.6 78 83.3
Manes.10G019000 Manihot esculenta HOM05D004100 ORTHO05D004781 4.4e-28 128.6 78 80.8
Thecc.10G028200 Theobroma cacao HOM05D004100 ORTHO05D004781 4.4e-28 128.6 80 81.2
CAN.G689.7 Capsicum annuum HOM05D004100 ORTHO05D004781 7.5e-28 127.9 78 79.5
Eucgr.E00256 Eucalyptus grandis HOM05D004100 ORTHO05D004781 7.5e-28 127.9 114 61.4
Glyma.18G031200 Glycine max HOM05D004100 ORTHO05D004781 9.8e-28 127.5 78 82.1
CiPaw.02G189000 Carya illinoinensis HOM05D004100 ORTHO05D004781 1.7e-27 126.7 78 83.3
Lalb_Chr15g0084391 Lupinus albus HOM05D004100 ORTHO05D004781 1.7e-27 126.7 78 79.5
Lalb_Chr18g0052831 Lupinus albus HOM05D004100 ORTHO05D004781 1.7e-27 126.7 78 79.5
Sed0001470 Sechium edule HOM05D004100 ORTHO05D004781 2.2e-27 126.3 78 80.8
Duzib114G0906 Durio zibethinus HOM05D004100 ORTHO05D004781 3.7e-27 125.6 78 80.8
Phvul.001G239400 Phaseolus vulgaris HOM05D004100 ORTHO05D004781 3.7e-27 125.6 78 79.5
Gohir.D04G065900 Gossypium hirsutum HOM05D004100 ORTHO05D004781 4.8e-27 125.2 78 80.8
Gorai.012G074300 Gossypium raimondii HOM05D004100 ORTHO05D004781 4.8e-27 125.2 78 80.8
arahy.Tifrunner.gnm1.ann1.YUBK9J Arachis hypogaea HOM05D004100 ORTHO05D004781 6.3e-27 124.8 78 79.5
Gohir.A05G346300 Gossypium hirsutum HOM05D004100 ORTHO05D004781 6.3e-27 124.8 78 80.8
Eucgr.G03237 Eucalyptus grandis HOM05D004100 ORTHO05D004781 8.3e-27 124.4 91 72.5
RcHm_v2.0_Chr1g0369131 Rosa chinensis HOM05D004100 ORTHO05D004781 1.1e-26 124.0 78 79.5
COL.COLO4_25607 Corchorus olitorius HOM05D004100 ORTHO05D004781 1.4e-26 123.6 79 81.0
vmacro16617 Vaccinium macrocarpon HOM05D004100 ORTHO05D004781 1.4e-26 123.6 79 74.7
Ciclev10010082m.g Citrus clementina HOM05D004100 ORTHO05D004781 2.4e-26 122.9 78 79.5
Rhsim09G0171200 Rhododendron simsii HOM05D004100 ORTHO05D004781 2.4e-26 122.9 80 72.5
Gohir.D13G018200 Gossypium hirsutum HOM05D004100 ORTHO05D004781 4.1e-26 122.1 80 75.0
Manes.07G124300 Manihot esculenta HOM05D004100 ORTHO05D004781 4.1e-26 122.1 78 79.5
TWI63G1110 Tripterygium wilfordii HOM05D004100 ORTHO05D004781 4.1e-26 122.1 78 79.5
Duzib128G1203 Durio zibethinus HOM05D004100 ORTHO05D004781 5.4e-26 121.7 78 79.5
PSO384G2084 Papaver somniferum HOM05D004100 ORTHO05D004781 1.2e-25 120.6 78 80.8
PSO585G0025 Papaver somniferum HOM05D004100 ORTHO05D004781 1.2e-25 120.6 78 80.8
Potri.010G194400 Populus trichocarpa HOM05D004100 ORTHO05D004781 1.2e-25 120.6 78 78.2
ClCG11G006500 Citrullus lanatus HOM05D004100 ORTHO05D004781 1.6e-25 120.2 73 82.2
Potri.008G063000 Populus trichocarpa HOM05D004100 ORTHO05D004781 1.6e-25 120.2 78 76.9
FvH4_7g23790 Fragaria vesca HOM05D004100 ORTHO05D004781 2.0e-25 119.8 78 78.2
Phvul.008G227500 Phaseolus vulgaris HOM05D004100 ORTHO05D004781 2.0e-25 119.8 78 76.9
arahy.Tifrunner.gnm1.ann1.7Y0XMR Arachis hypogaea HOM05D004100 ORTHO05D004781 2.7e-25 119.4 84 70.2
CSS0039007 Camellia sinensis var. sinensis HOM05D004100 ORTHO05D004781 2.7e-25 119.4 79 73.4
Gorai.013G020200 Gossypium raimondii HOM05D004100 ORTHO05D004781 2.7e-25 119.4 80 73.8
Psat2g035960 Pisum sativum HOM05D004100 ORTHO05D004781 2.7e-25 119.4 78 74.4
Sed0017691 Sechium edule HOM05D004100 ORTHO05D004781 2.7e-25 119.4 78 82.1
vmacro10075 Vaccinium macrocarpon HOM05D004100 ORTHO05D004781 2.7e-25 119.4 78 73.1
Ca_05921_v3 Cicer arietinum L. HOM05D004100 ORTHO05D004781 3.5e-25 119.0 78 76.9
Gohir.A13G017100 Gossypium hirsutum HOM05D004100 ORTHO05D004781 4.5e-25 118.6 78 74.4
CSS0011416 Camellia sinensis var. sinensis HOM05D004100 ORTHO05D004781 7.7e-25 117.9 78 74.4
Medtr5g081650 Medicago truncatula HOM05D004100 ORTHO05D004781 1.3e-24 117.1 78 74.4
CSS0037675 Camellia sinensis var. sinensis HOM05D004100 ORTHO05D004781 1.7e-24 116.7 73 76.7
Lalb_Chr04g0250821 Lupinus albus HOM05D004100 ORTHO05D004781 1.7e-24 116.7 78 71.8
Sc11g0006410 Simmondsia chinensis HOM05D004100 ORTHO05D004781 1.7e-24 116.7 78 76.9
TPR.G8047 Trifolium pratense HOM05D004100 ORTHO05D004781 1.7e-24 116.7 78 74.4
Prupe.2G244600 Prunus persica HOM05D004100 ORTHO05D004781 2.2e-24 116.3 78 76.9
PGR044G2436 Punica granatum HOM05D004100 ORTHO05D004781 2.2e-24 116.3 78 75.6
arahy.Tifrunner.gnm1.ann1.0J6FIX Arachis hypogaea HOM05D004100 ORTHO05D004781 2.9e-24 115.9 78 74.4
GSVIVG01013495001 Vitis vinifera HOM05D004100 ORTHO05D004781 2.9e-24 115.9 78 74.4
CDE05G3529 Ceratophyllum demersum HOM05D004100 ORTHO05D004781 6.5e-24 114.8 78 74.4
TAR369G1064 Trochodendron aralioides HOM05D004100 ORTHO05D004781 6.5e-24 114.8 78 76.9
Glyma.02G253300 Glycine max HOM05D004100 ORTHO05D004781 1.1e-23 114.0 78 74.4
Nn2g11332 Nelumbo nucifera HOM05D004100 ORTHO05D004781 1.1e-23 114.0 78 75.6
Sabra10G0149500 Salix brachista HOM05D004100 ORTHO05D004781 1.1e-23 114.0 78 74.4
Glyma.14G063100 Glycine max HOM05D004100 ORTHO05D004781 1.9e-23 113.2 78 73.1
arahy.Tifrunner.gnm1.ann1.97IM7W Arachis hypogaea HOM05D004100 ORTHO05D004781 4.2e-23 112.1 77 71.4
Os09g0326850 Oryza sativa ssp. japonica HOM05D004100 ORTHO05D004781 4.2e-23 112.1 85 74.1
ECA247G3878 Erigeron canadensis HOM05D001920 ORTHO05D004895 1.2e-22 110.5 58 87.9
Aqoxy2G00841 Aquilegia oxysepala HOM05D004100 ORTHO05D004781 2.1e-22 109.8 77 72.7
Lj6g0000528 Lotus japonicus HOM05D004100 ORTHO05D004781 2.1e-22 109.8 78 70.5
Ah.10g030410 Amaranthus hybridus HOM05D004100 ORTHO05D004781 2.7e-22 109.4 78 71.8
Medtr4g019160 Medicago truncatula HOM05D004100 ORTHO05D004781 3.6e-22 109.0 81 67.9
TAR623G1136 Trochodendron aralioides HOM05D004100 ORTHO05D004781 3.6e-22 109.0 78 70.5
Aqoxy6G01946 Aquilegia oxysepala HOM05D004100 ORTHO05D004781 4.7e-22 108.6 78 71.8
Os03g0331900 Oryza sativa ssp. japonica HOM05D004100 ORTHO05D004781 2.3e-21 106.3 119 53.8
Nn2g13575 Nelumbo nucifera HOM05D004100 ORTHO05D004781 3.0e-21 105.9 78 67.9
Manes.08G084000 Manihot esculenta HOM05D004100 ORTHO05D004781 4.0e-21 105.5 78 66.7
Nn6g33749 Nelumbo nucifera HOM05D004100 ORTHO05D004781 4.0e-21 105.5 75 72.0
Glyma.01G109600 Glycine max HOM05D004100 ORTHO05D004781 5.2e-21 105.1 78 67.9
Glyma.03G074700 Glycine max HOM05D004100 ORTHO05D004781 5.2e-21 105.1 78 67.9
Phvul.010G006600 Phaseolus vulgaris HOM05D004100 ORTHO05D004781 5.2e-21 105.1 78 66.7
PGR031G0718 Punica granatum HOM05D004100 ORTHO05D004781 5.2e-21 105.1 80 67.5
TWI53G1956 Tripterygium wilfordii HOM05D004100 ORTHO05D004781 6.8e-21 104.8 78 67.9
TWI74G1404 Tripterygium wilfordii HOM05D004100 ORTHO05D004781 6.8e-21 104.8 78 67.9
Duzib093G2045 Durio zibethinus HOM05D004100 ORTHO05D004781 8.8e-21 104.4 78 66.7
Duzib128G0469 Durio zibethinus HOM05D004100 ORTHO05D004781 8.8e-21 104.4 78 66.7
THA.LOC104805700 Tarenaya hassleriana HOM05D004100 ORTHO05D004781 8.8e-21 104.4 78 66.7
TPR.G8216 Trifolium pratense HOM05D004100 ORTHO05D004781 1.2e-20 104.0 78 66.7
Aa31sc250G10 Aethionema arabicum HOM05D004100 ORTHO05D004781 1.5e-20 103.6 79 68.4
CANSAT35G1936 Cannabis sativa HOM05D004100 ORTHO05D004781 2.6e-20 102.8 79 69.6
Sabra16G0106200 Salix brachista HOM05D004100 ORTHO05D004781 2.6e-20 102.8 78 62.8
Thecc.05G024300 Theobroma cacao HOM05D004100 ORTHO05D004781 4.4e-20 102.1 78 66.7
Atru.chr8.2126 Acer truncatum HOM05D004100 ORTHO05D004781 5.7e-20 101.7 78 66.7
Gorai.012G110700 Gossypium raimondii HOM05D004100 ORTHO05D004781 5.7e-20 101.7 78 65.4
QL07p036366 Quercus lobata HOM05D004100 ORTHO05D004781 9.8e-20 100.9 77 63.6
BolC3t14861H Brassica oleracea HOM05D000076 ORTHO05D001377 1.3e-19 100.5 82 62.2
Ciclev10013247m.g Citrus clementina HOM05D004100 ORTHO05D004781 3.7e-19 99.0 78 64.1
AL5G35090 Arabidopsis lyrata HOM05D004100 ORTHO05D004781 4.9e-19 98.6 79 64.6
AT3G54085 Arabidopsis thaliana HOM05D004100 ORTHO05D004781 4.9e-19 98.6 79 64.6
Carub.0005s2067 Capsella rubella HOM05D004100 ORTHO05D004781 4.9e-19 98.6 79 64.6
RcHm_v2.0_Chr3g0464081 Rosa chinensis HOM05D004100 ORTHO05D004781 4.9e-19 98.6 78 59.0
Aa31sc516G30 Aethionema arabicum HOM05D004100 ORTHO05D004781 6.3e-19 98.2 79 65.8
FvH4_6g12280 Fragaria vesca HOM05D004100 ORTHO05D004781 6.3e-19 98.2 78 60.3
Gohir.D04G127700 Gossypium hirsutum HOM05D004100 ORTHO05D004781 6.3e-19 98.2 78 65.4
MD12G1158300 Malus domestica HOM05D004100 ORTHO05D004781 6.3e-19 98.2 78 60.3
Potri.016G109500 Populus trichocarpa HOM05D004100 ORTHO05D004781 6.3e-19 98.2 75 62.7
BcaB01g03736 Brassica carinata HOM05D000076 ORTHO05D001377 8.3e-19 97.8 79 63.3
BraA03t11338Z Brassica rapa HOM05D000076 ORTHO05D001377 8.3e-19 97.8 79 63.3
BraA04t18382Z Brassica rapa HOM05D000076 ORTHO05D001377 8.3e-19 97.8 101 52.5
FAN09G3480 Fragaria x ananassa HOM05D004100 ORTHO05D004781 8.3e-19 97.8 77 59.7
MD04G1144200 Malus domestica HOM05D004100 ORTHO05D004781 8.3e-19 97.8 78 61.5
Sp4g20290 Schrenkiella parvula HOM05D004100 ORTHO05D004781 8.3e-19 97.8 79 63.3
Cfa017271 Carpinus fangiana HOM05D004100 ORTHO05D004781 1.8e-18 96.7 78 64.1
Carub.0004s1994 Capsella rubella HOM05D004100 ORTHO05D004781 2.4e-18 96.3 79 62.0
CARHR132530 Cardamine hirsuta HOM05D004100 ORTHO05D004781 2.4e-18 96.3 79 62.0
CiPaw.09G204500 Carya illinoinensis HOM05D004100 ORTHO05D004781 2.4e-18 96.3 78 62.8
Thhalv10017760m.g Eutrema salsugineum HOM05D004100 ORTHO05D004781 2.4e-18 96.3 79 62.0
A04p29120 Brassica napus HOM05D004100 ORTHO05D004781 3.1e-18 95.9 79 62.0
BolC4t28139H Brassica oleracea HOM05D000076 ORTHO05D001377 3.1e-18 95.9 79 62.0
ClCG10G021700 Citrullus lanatus HOM05D004100 ORTHO05D004781 3.1e-18 95.9 78 61.5
CARHR163970 Cardamine hirsuta HOM05D004100 ORTHO05D004781 4.1e-18 95.5 79 62.0
BcaB02g09230 Brassica carinata HOM05D004100 ORTHO05D004781 5.4e-18 95.1 79 62.0
BraA05t19768Z Brassica rapa HOM05D004100 ORTHO05D004781 5.4e-18 95.1 79 62.0
AL4G34950 Arabidopsis lyrata HOM05D004100 ORTHO05D004781 9.2e-18 94.4 79 60.8
AT2G37975 Arabidopsis thaliana HOM05D004100 ORTHO05D004781 9.2e-18 94.4 79 60.8
HPP92_003287 Vanilla planifolia HOM05D004100 ORTHO05D004781 1.2e-17 94.0 64 76.6
A09p47070 Brassica napus HOM05D004100 ORTHO05D004781 1.6e-17 93.6 79 58.2
CARHR150630 Cardamine hirsuta HOM05D004100 ORTHO05D004781 2.0e-17 93.2 79 60.8
Prupe.6G268700 Prunus persica HOM05D004100 ORTHO05D004781 2.7e-17 92.8 78 59.0
CiPaw.10G153500 Carya illinoinensis HOM05D004100 ORTHO05D004781 3.5e-17 92.4 78 61.5
Thhalv10010931m.g Eutrema salsugineum HOM05D004100 ORTHO05D004781 3.5e-17 92.4 84 57.1
Gohir.A04G087300 Gossypium hirsutum HOM05D004100 ORTHO05D004781 3.5e-17 92.4 68 64.7
Mapoly0015s0116 Marchantia polymorpha HOM05D004100 ORTHO05D004781 7.7e-17 91.3 78 55.1
Psat7g242160 Pisum sativum HOM05D004100 ORTHO05D004781 7.7e-17 91.3 76 59.2
C08p29320 Brassica napus HOM05D004100 ORTHO05D004781 1.0e-16 90.9 79 57.0
Ah.02g116480 Amaranthus hybridus HOM05D004100 ORTHO05D004781 1.3e-16 90.5 78 62.8
Ah.12g057400 Amaranthus hybridus HOM05D004100 ORTHO05D004781 1.3e-16 90.5 78 62.8
THA.LOC104816861 Tarenaya hassleriana HOM05D004100 ORTHO05D004781 2.9e-16 89.4 78 57.7
MELO3C009201.2 Cucumis melo HOM05D004100 ORTHO05D004781 3.8e-16 89.0 78 57.7
Actinidia27826 Actinidia chinensis HOM05D004100 ORTHO05D004781 2.5e-15 86.3 43 88.4
FAN01G2433 Fragaria x ananassa HOM05D004100 ORTHO05D004781 3.3e-15 85.9 56 73.2
FAN03G0295 Fragaria x ananassa HOM05D004100 ORTHO05D004781 5.6e-15 85.1 52 76.9
BcaNung06516 Brassica carinata HOM05D004100 ORTHO05D004781 2.8e-14 82.8 78 57.7
Pp3c5_27310 Physcomitrium patens HOM05D004100 ORTHO05D004781 1.0e-13 80.9 78 53.8
Sed0010532 Sechium edule HOM05D004100 ORTHO05D004781 1.0e-13 80.9 78 53.8
arahy.Tifrunner.gnm1.ann1.R21D2Y Arachis hypogaea HOM05D004100 ORTHO05D004781 1.4e-13 80.5 57 63.2
arahy.Tifrunner.gnm1.ann1.0IJH0T Arachis hypogaea HOM05D004100 ORTHO05D087279 2.3e-13 79.7 59 67.8
AUR62013833 Chenopodium quinoa HOM05D004100 ORTHO05D004781 4.0e-13 79.0 72 61.1
Prupe.6G268600 Prunus persica HOM05D004100 ORTHO05D004781 4.0e-13 79.0 77 53.2
Atru.chr8.2168 Acer truncatum HOM05D004100 ORTHO05D004781 6.8e-13 78.2 62 64.5
Pp3c6_2550 Physcomitrium patens HOM05D004100 ORTHO05D004781 6.8e-13 78.2 78 53.8
SMO117G0142 Selaginella moellendorffii HOM05D004100 ORTHO05D004781 4.4e-12 75.5 76 48.7
LjContig00141g0009471 Lotus japonicus HOM05D004100 ORTHO05D004781 2.2e-11 73.2 58 53.4
AUR62037182 Chenopodium quinoa HOM05D004100 ORTHO05D004781 1.2e-09 67.4 73 52.1
FAN06G1577 Fragaria x ananassa HOM05D004100 ORTHO05D004781 4.6e-09 65.5 41 75.6
BcaC02g11939 Brassica carinata HOM05D004100 ORTHO05D004781 1.7e-08 63.5 35 80.0
FAN06G2089 Fragaria x ananassa HOM05D004100 ORTHO05D004781 1.7e-08 63.5 39 76.9
Cre06.g299750 Chlamydomonas reinhardtii HOM05D004100 ORTHO05D004781 3.0e-08 62.8 78 44.9
MCO12G437 Micromonas commoda HOM05D004100 ORTHO05D004781 5.0e-08 62.0 80 48.8
PRCOL_00003613 Prasinoderma coloniale HOM05D004100 ORTHO05D004781 7.3e-07 58.2 80 45.0


User provided reference genes

Program Settings