Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc08g082420.3 Solanum lycopersicum HOM05D000749 ORTHO05D005685 1.3e-105 386.3 190 100.0
Sopen08g030670 Solanum pennellii HOM05D000749 ORTHO05D005685 1.3e-105 386.3 190 100.0
PGSC0003DMG400012277 Solanum tuberosum HOM05D000749 ORTHO05D005685 1.8e-102 375.9 190 96.8
CAN.G1804.10 Capsicum annuum HOM05D000749 ORTHO05D005685 3.6e-95 351.7 190 90.5
Nitab4.5_0006775g0110 Nicotiana tabacum HOM05D000749 ORTHO05D005685 1.3e-92 343.2 190 87.9
Peaxi162Scf00074g00738 Petunia axillaris HOM05D000749 ORTHO05D005685 3.4e-85 318.5 189 82.5
Solyc12g055950.2 Solanum lycopersicum HOM05D000749 ORTHO05D005685 6.2e-71 271.2 179 73.2
Sopen12g024420 Solanum pennellii HOM05D000749 ORTHO05D005685 8.1e-71 270.8 179 73.2
Cc08_g16120 Coffea canephora HOM05D000749 ORTHO05D005685 8.9e-70 267.3 190 71.6
Nitab4.5_0000726g0060 Nicotiana tabacum HOM05D000749 ORTHO05D005685 1.2e-69 266.9 180 71.7
CSS0014286 Camellia sinensis var. sinensis HOM05D000749 ORTHO05D005685 2.6e-69 265.8 170 74.7
CSS0022068 Camellia sinensis var. sinensis HOM05D000749 ORTHO05D005685 2.6e-69 265.8 170 74.7
SGA_v2.0_scaffold305G47984 Striga asiatica HOM05D000749 ORTHO05D005685 4.4e-69 265.0 190 70.0
Migut.A00638 Erythranthe guttata HOM05D000749 ORTHO05D005685 9.9e-69 263.8 179 71.5
CSS0029811 Camellia sinensis var. sinensis HOM05D000749 ORTHO05D005685 6.4e-68 261.2 170 73.5
CAN.G390.4 Capsicum annuum HOM05D000749 ORTHO05D005685 6.4e-68 261.2 170 74.1
Oeu063515.1 Olea europaea HOM05D000749 ORTHO05D005685 6.4e-68 261.2 170 72.9
CSS0041880 Camellia sinensis var. sinensis HOM05D000749 ORTHO05D005685 8.4e-68 260.8 170 73.5
DCAR_029896 Daucus carota HOM05D000749 ORTHO05D005685 1.4e-67 260.0 179 70.9
Ciclev10022306m.g Citrus clementina HOM05D000749 ORTHO05D005685 2.4e-67 259.2 184 68.5
Nitab4.5_0004010g0100 Nicotiana tabacum HOM05D000749 ORTHO05D005685 2.4e-67 259.2 178 71.9
PGSC0003DMG400004994 Solanum tuberosum HOM05D000749 ORTHO05D005685 3.2e-67 258.8 163 76.7
MSTRG.25679 Avicennia marina HOM05D000749 ORTHO05D005685 9.2e-67 257.3 176 72.7
GSVIVG01019537001 Vitis vinifera HOM05D003962 ORTHO05D005685 1.6e-66 256.5 170 72.4
Nitab4.5_0001210g0100 Nicotiana tabacum HOM05D000749 ORTHO05D005685 2.1e-66 256.1 137 90.5
Glyma.08G022600 Glycine max HOM05D000749 ORTHO05D005685 4.6e-66 255.0 179 67.6
Ca_17481_v3 Cicer arietinum L. HOM05D000749 ORTHO05D004893 6.0e-66 254.6 184 66.8
Ca_17505_v3 Cicer arietinum L. HOM05D000749 ORTHO05D005685 6.0e-66 254.6 184 66.8
Peaxi162Scf00117g01125 Petunia axillaris HOM05D000749 ORTHO05D005685 6.0e-66 254.6 183 70.5
ClCG01G001690 Citrullus lanatus HOM05D000749 ORTHO05D005685 7.8e-66 254.2 170 71.8
CsaV3_5G001830 Cucumis sativus L. HOM05D000749 ORTHO05D005685 7.8e-66 254.2 170 72.4
Dinv37528 Davidia involucrata HOM05D000749 ORTHO05D005685 1.7e-65 253.1 190 68.9
Manes.01G049300 Manihot esculenta HOM05D000749 ORTHO05D005685 1.7e-65 253.1 170 71.8
Actinidia22163 Actinidia chinensis HOM05D000749 ORTHO05D005685 2.3e-65 252.7 185 69.7
VMungo0251G1927 Vigna mungo HOM05D000749 ORTHO05D005685 3.0e-65 252.3 177 68.4
Lj2A167G41 Lonicera japonica HOM05D000749 ORTHO05D005685 5.1e-65 251.5 165 77.6
Medtr8g099455 Medicago truncatula HOM05D000749 ORTHO05D005685 6.6e-65 251.1 184 66.3
MELO3C005770.2 Cucumis melo HOM05D000749 ORTHO05D005685 8.6e-65 250.8 184 68.5
Prupe.5G120700 Prunus persica HOM05D000749 ORTHO05D004893 1.5e-64 250.0 184 66.3
SalBow1G4618 Salvia bowleyana HOM05D000749 ORTHO05D005685 1.5e-64 250.0 171 72.5
QL02p030312 Quercus lobata HOM05D000749 ORTHO05D005685 2.5e-64 249.2 184 64.1
CiPaw.11G120800 Carya illinoinensis HOM05D000749 ORTHO05D005685 3.3e-64 248.8 181 66.9
HanXRQChr13g0415321 Helianthus annuus HOM05D000749 ORTHO05D005685 3.3e-64 248.8 191 66.5
vmacro11358 Vaccinium macrocarpon HOM05D000749 ORTHO05D005685 3.3e-64 248.8 170 70.0
Duzib084G0187 Durio zibethinus HOM05D000749 ORTHO05D005685 4.3e-64 248.4 184 66.3
TAR629G1059 Trochodendron aralioides HOM05D000749 ORTHO05D005685 5.6e-64 248.1 190 68.9
CiPaw.12G082400 Carya illinoinensis HOM05D000749 ORTHO05D005685 1.2e-63 246.9 184 66.3
Haze_09069 Corylus avellana HOM05D000749 ORTHO05D005685 2.1e-63 246.1 188 65.4
TWI81G0603 Tripterygium wilfordii HOM05D000749 ORTHO05D005685 2.8e-63 245.7 180 68.3
RcHm_v2.0_Chr7g0194721 Rosa chinensis HOM05D000749 ORTHO05D005685 3.6e-63 245.4 185 65.4
Sed0010333 Sechium edule HOM05D000749 ORTHO05D005685 3.6e-63 245.4 173 69.9
arahy.Tifrunner.gnm1.ann1.1JV6NN Arachis hypogaea HOM05D000749 ORTHO05D005685 4.7e-63 245.0 184 64.1
Phvul.002G298000 Phaseolus vulgaris HOM05D000749 ORTHO05D005685 4.7e-63 245.0 177 66.7
FvH4_5g04660 Fragaria vesca HOM05D000749 ORTHO05D005685 6.2e-63 244.6 184 65.2
FAN18G0718 Fragaria x ananassa HOM05D000749 ORTHO05D005685 6.2e-63 244.6 185 64.9
FAN18G2450 Fragaria x ananassa HOM05D000749 ORTHO05D005685 6.2e-63 244.6 184 65.2
Dinv38828 Davidia involucrata HOM05D003962 ORTHO05D004714 8.1e-63 244.2 163 74.8
arahy.Tifrunner.gnm1.ann1.YIX88E Arachis hypogaea HOM05D000749 ORTHO05D005685 1.4e-62 243.4 184 63.6
ECA246G0427 Erigeron canadensis HOM05D000749 ORTHO05D005685 1.4e-62 243.4 179 64.2
Glyma.05G216800 Glycine max HOM05D000749 ORTHO05D005685 1.4e-62 243.4 179 65.9
LjContig00312_ERROPOS870357g0005368 Lotus japonicus HOM05D000749 ORTHO05D005685 1.4e-62 243.4 184 65.8
Sed0020991 Sechium edule HOM05D000749 ORTHO05D005685 1.4e-62 243.4 172 69.8
Lalb_Chr09g0332451 Lupinus albus HOM05D000749 ORTHO05D005685 1.8e-62 243.0 184 64.7
Thecc.03G298600 Theobroma cacao HOM05D000749 ORTHO05D005685 1.8e-62 243.0 184 65.8
FAN13G3049 Fragaria x ananassa HOM05D000749 ORTHO05D005685 2.4e-62 242.7 184 64.7
MD14G1129100 Malus domestica HOM05D000749 ORTHO05D005685 2.4e-62 242.7 187 65.8
PGR042G1555 Punica granatum HOM05D000749 ORTHO05D005685 4.0e-62 241.9 184 61.4
Gohir.A12G236700 Gossypium hirsutum HOM05D000749 ORTHO05D005685 6.8e-62 241.1 184 65.8
HanXRQChr17g0534821 Helianthus annuus HOM05D000749 ORTHO05D005685 6.8e-62 241.1 179 63.7
Lsat_1_v5_gn_6_83941 Lactuca sativa HOM05D000749 ORTHO05D004893 8.9e-62 240.7 185 65.4
MD06G1107400 Malus domestica HOM05D000749 ORTHO05D005685 8.9e-62 240.7 183 63.4
Atru.chr9.1976 Acer truncatum HOM05D000749 ORTHO05D005685 1.2e-61 240.4 190 63.2
Atru.chr9.1991 Acer truncatum HOM05D000749 ORTHO05D005685 1.2e-61 240.4 190 63.2
CANSAT21G1880 Cannabis sativa HOM05D000749 ORTHO05D005685 1.2e-61 240.4 183 65.0
COL.COLO4_10708 Corchorus olitorius HOM05D000749 ORTHO05D005685 1.2e-61 240.4 184 63.0
Gorai.008G254700 Gossypium raimondii HOM05D000749 ORTHO05D005685 1.2e-61 240.4 184 65.2
Duzib205G1799 Durio zibethinus HOM05D000749 ORTHO05D005685 1.5e-61 240.0 182 66.5
Gohir.D12G237900 Gossypium hirsutum HOM05D000749 ORTHO05D005685 1.5e-61 240.0 184 65.2
Gorai.004G132800 Gossypium raimondii HOM05D000749 ORTHO05D005685 1.5e-61 240.0 170 68.8
Rhsim02G0244300 Rhododendron simsii HOM05D000749 ORTHO05D005685 1.5e-61 240.0 175 67.4
AL7G29440 Arabidopsis lyrata HOM05D000749 ORTHO05D005685 2.0e-61 239.6 170 67.6
Gohir.D08G125900 Gossypium hirsutum HOM05D000749 ORTHO05D005685 2.0e-61 239.6 170 68.8
Lj4g0022263 Lotus japonicus HOM05D000749 ORTHO05D005685 2.0e-61 239.6 187 62.6
Potri.003G140500 Populus trichocarpa HOM05D000749 ORTHO05D005685 2.0e-61 239.6 178 66.9
BcaNung04243 Brassica carinata HOM05D000749 ORTHO05D005685 2.6e-61 239.2 189 61.9
C07p53200 Brassica napus HOM05D000749 ORTHO05D005685 2.6e-61 239.2 189 61.9
BolC7t45815H Brassica oleracea HOM05D000749 ORTHO05D005685 2.6e-61 239.2 189 61.9
AT4G23895 Arabidopsis thaliana HOM05D000749 ORTHO05D004893 5.8e-61 238.0 170 66.5
FAN08G1955 Fragaria x ananassa HOM05D000749 ORTHO05D005685 5.8e-61 238.0 194 61.9
Medtr5g009310 Medicago truncatula HOM05D000749 ORTHO05D005685 5.8e-61 238.0 184 63.6
BcaNung04079 Brassica carinata HOM05D000749 ORTHO05D005685 1.3e-60 236.9 170 66.5
A03p54840 Brassica napus HOM05D000749 ORTHO05D005685 1.3e-60 236.9 170 66.5
BraA03t14551Z Brassica rapa HOM05D000749 ORTHO05D005685 1.3e-60 236.9 189 61.4
Carub.0007s1721 Capsella rubella HOM05D000749 ORTHO05D005685 1.3e-60 236.9 170 67.1
Sp7g21860 Schrenkiella parvula HOM05D000749 ORTHO05D005685 2.2e-60 236.1 185 62.7
Hma1.2p1_0359F.1_g135200 Hydrangea macrophylla HOM05D000749 ORTHO05D005685 4.9e-60 235.0 190 63.7
Thhalv10026064m.g Eutrema salsugineum HOM05D000749 ORTHO05D005685 6.4e-60 234.6 170 65.3
Glyma.11G017700 Glycine max HOM05D000749 ORTHO05D005685 1.1e-59 233.8 185 63.2
Hma1.2p1_0440F.1_g153310 Hydrangea macrophylla HOM05D000749 ORTHO05D005685 1.1e-59 233.8 183 65.6
Potri.001G091100 Populus trichocarpa HOM05D000749 ORTHO05D005685 1.9e-59 233.0 183 62.3
TPR.G25592 Trifolium pratense HOM05D000749 ORTHO05D005685 2.4e-59 232.6 179 63.7
Aa31LG6G7160 Aethionema arabicum HOM05D000749 ORTHO05D005685 4.2e-59 231.9 170 64.1
CARHR231300 Cardamine hirsuta HOM05D000749 ORTHO05D005685 4.2e-59 231.9 170 64.7
THA.LOC104806439 Tarenaya hassleriana HOM05D000749 ORTHO05D005685 9.3e-59 230.7 178 64.0
VMungo1215G3291 Vigna mungo HOM05D000749 ORTHO05D005685 9.3e-59 230.7 183 61.2
arahy.Tifrunner.gnm1.ann1.JB76D2 Arachis hypogaea HOM05D000749 ORTHO05D005685 1.2e-58 230.3 184 62.0
Lsat_1_v5_gn_3_10900 Lactuca sativa HOM05D000749 ORTHO05D004893 1.2e-58 230.3 178 64.0
FAN13G2768 Fragaria x ananassa HOM05D000749 ORTHO05D005685 1.6e-58 229.9 184 62.5
THA.LOC104813042 Tarenaya hassleriana HOM05D000749 ORTHO05D005685 1.6e-58 229.9 170 64.1
Lalb_Chr09g0320651 Lupinus albus HOM05D000749 ORTHO05D005685 4.6e-58 228.4 187 61.5
Cfa012001 Carpinus fangiana HOM05D000749 ORTHO05D004893 7.8e-58 227.6 163 67.5
CDE10G0735 Ceratophyllum demersum HOM05D000749 ORTHO05D005685 1.0e-57 227.3 181 63.5
HanXRQChr03g0083461 Helianthus annuus HOM05D000749 ORTHO05D005685 1.3e-57 226.9 163 69.9
Ah.12g052570 Amaranthus hybridus HOM05D000749 ORTHO05D005685 2.3e-57 226.1 184 62.0
ECA240G0537 Erigeron canadensis HOM05D000749 ORTHO05D005685 2.3e-57 226.1 171 66.7
MBI06_g08470_MAGBIO Magnolia biondii HOM05D000749 ORTHO05D005685 3.9e-57 225.3 186 62.4
Sabra01G0067500 Salix brachista HOM05D000749 ORTHO05D005685 3.9e-57 225.3 196 59.2
Aqoxy7G00094 Aquilegia oxysepala HOM05D000749 ORTHO05D005685 5.1e-57 224.9 181 66.3
Sc07g0010060 Simmondsia chinensis HOM05D000749 ORTHO05D005685 5.1e-57 224.9 188 61.7
Nn1g00225 Nelumbo nucifera HOM05D000749 ORTHO05D005685 1.1e-56 223.8 167 67.7
unitig_88.g27644 Utricularia gibba HOM05D000749 ORTHO05D005685 1.9e-56 223.0 160 67.5
AUR62019844 Chenopodium quinoa HOM05D000749 ORTHO05D005685 4.3e-56 221.9 185 60.5
HPP92_008182 Vanilla planifolia HOM05D000749 ORTHO05D005685 4.3e-56 221.9 176 61.4
Sabra03G0101500 Salix brachista HOM05D000749 ORTHO05D005685 5.6e-56 221.5 164 65.9
PSO384G3968 Papaver somniferum HOM05D000749 ORTHO05D005685 7.3e-56 221.1 190 61.6
PSO135G0827 Papaver somniferum HOM05D000749 ORTHO05D005685 1.6e-55 219.9 171 64.9
Eucgr.E00870 Eucalyptus grandis HOM05D000749 ORTHO05D005685 3.6e-55 218.8 225 53.3
AUR62010845 Chenopodium quinoa HOM05D000749 ORTHO05D005685 1.1e-54 217.2 185 60.0
EL10Ac5g12920 Beta vulgaris HOM05D000749 ORTHO05D004893 3.1e-54 215.7 163 64.4
Hund14218 Selenicereus undatus HOM05D000749 ORTHO05D005685 4.0e-54 215.3 170 61.8
BcaB03g12399 Brassica carinata HOM05D000749 ORTHO05D005685 5.3e-54 214.9 162 63.0
Psat7g025640 Pisum sativum HOM05D000749 ORTHO05D005685 6.9e-54 214.5 162 66.7
SalBow1G0265 Salvia bowleyana HOM05D000749 ORTHO05D005685 2.0e-53 213.0 258 48.4
ECA240G3820 Erigeron canadensis HOM05D000749 ORTHO05D005685 2.6e-53 212.6 148 70.9
Sc22g0004990 Simmondsia chinensis HOM05D000749 ORTHO05D005685 4.4e-53 211.8 191 56.0
Hund11388 Selenicereus undatus HOM05D000749 ORTHO05D005685 1.3e-52 210.3 170 60.6
Zm00001eb297840 Zea mays HOM05D000749 ORTHO05D005685 4.9e-52 208.4 189 53.4
Os05g0595500 Oryza sativa ssp. japonica HOM05D000749 ORTHO05D005685 5.4e-51 204.9 170 57.1
Phvul.002G164200 Phaseolus vulgaris HOM05D000749 ORTHO05D005685 5.4e-51 204.9 183 56.3
unitig_0.g1147 Utricularia gibba HOM05D000749 ORTHO05D005685 1.3e-49 200.3 170 57.6
ATR0602G082 Amborella trichopoda HOM05D000749 ORTHO05D005685 2.4e-46 189.5 172 58.1
BolC3t20284H Brassica oleracea HOM05D000749 ORTHO05D005685 5.8e-45 184.9 170 54.7
Gohir.D12G237901 Gossypium hirsutum HOM05D000749 ORTHO05D005685 9.9e-45 184.1 134 68.7
Gohir.A08G112900 Gossypium hirsutum HOM05D000749 ORTHO05D005685 2.2e-44 183.0 122 69.7
MSTRG.13887 Avicennia marina HOM05D000749 ORTHO05D005685 2.3e-41 172.9 128 64.1
BcaC01g00478 Brassica carinata HOM05D000749 ORTHO05D005685 1.1e-40 170.6 196 47.4
C03p80360 Brassica napus HOM05D000749 ORTHO05D005685 1.1e-40 170.6 196 47.4
Mapoly0105s0026 Marchantia polymorpha HOM05D000749 ORTHO05D005685 1.9e-40 169.9 171 52.6
CDE10G1055 Ceratophyllum demersum HOM05D000749 ORTHO05D005685 6.9e-38 161.4 132 62.1
TPR.G3419 Trifolium pratense HOM05D000749 ORTHO05D005685 2.9e-36 156.0 106 72.6
Pp3c8_7850 Physcomitrium patens HOM05D000749 ORTHO05D005685 6.7e-33 144.8 185 44.9
BcaC09g50933 Brassica carinata HOM05D000749 ORTHO05D005685 6.7e-25 118.2 128 48.4
AagrBONN_evm.TU.Sc2ySwM_344.2051 Anthoceros agrestis HOM05D000749 ORTHO05D005685 3.2e-19 99.4 105 51.4
TPR.G18933 Trifolium pratense HOM05D000749 ORTHO05D005685 1.6e-18 97.1 73 57.5
Pp3c24_4620 Physcomitrium patens HOM05D000749 ORTHO05D005685 2.3e-17 93.2 104 49.0
CBR_g4807 Chara braunii HOM05D000749 ORTHO05D005685 1.2e-13 80.9 157 31.2
FAN04G2853 Fragaria x ananassa HOM05D000749 ORTHO05D004893 2.0e-13 80.1 67 55.2
Cpa.g.sc79.31 Carica papaya HOM05D000749 ORTHO05D005685 2.6e-08 63.2 49 65.3
RcHm_v2.0_Chr1g0343991 Rosa chinensis HOM05D000749 ORTHO05D005685 2.8e-07 59.7 49 53.1


User provided reference genes

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