Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen08g030650 Solanum pennellii HOM05D004051 ORTHO05D004480 3.3e-40 167.9 86 100.0
Solyc08g082390.3 Solanum lycopersicum HOM05D004051 ORTHO05D004480 3.1e-38 161.4 86 96.5
PGSC0003DMG400012279 Solanum tuberosum HOM05D004051 ORTHO05D004480 4.4e-32 141.0 84 90.5
Peaxi162Scf00102g01842 Petunia axillaris HOM05D004051 ORTHO05D004480 1.5e-24 115.9 77 76.6
Solyc08g008330.3 Solanum lycopersicum HOM05D004051 ORTHO05D004480 1.5e-24 115.9 80 75.0
Sopen08g004210 Solanum pennellii HOM05D004051 ORTHO05D004480 1.5e-24 115.9 80 75.0
Oeu054023.1 Olea europaea HOM05D004051 ORTHO05D004480 1.3e-23 112.8 76 77.6
PGSC0003DMG400005791 Solanum tuberosum HOM05D004051 ORTHO05D004480 9.1e-22 106.7 76 75.0
Oeu063517.1 Olea europaea HOM05D004051 ORTHO05D004480 7.7e-21 103.6 82 68.3
Glyma.01G225400 Glycine max HOM05D004051 ORTHO05D004480 3.2e-19 98.2 82 68.3
unitig_88.g27640 Utricularia gibba HOM05D004051 ORTHO05D004480 1.2e-18 96.3 76 63.2
Cc08_g16090 Coffea canephora HOM05D004051 ORTHO05D004480 3.6e-18 94.7 81 64.2
EL10Ac5g12918 Beta vulgaris HOM05D004051 ORTHO05D004480 6.1e-18 94.0 84 61.9
Actinidia22162 Actinidia chinensis HOM05D004051 ORTHO05D004480 1.4e-17 92.8 81 65.4
ECA240G0536 Erigeron canadensis HOM05D004051 ORTHO05D004480 1.4e-17 92.8 83 60.2
HanXRQChr03g0083481 Helianthus annuus HOM05D004051 ORTHO05D004480 1.4e-17 92.8 80 62.5
TAR629G1304 Trochodendron aralioides HOM05D004051 ORTHO05D004480 1.4e-17 92.8 85 61.2
Nn1g01872 Nelumbo nucifera HOM05D004051 ORTHO05D004480 3.0e-17 91.7 86 58.1
Dinv37531 Davidia involucrata HOM05D004051 ORTHO05D004480 5.2e-17 90.9 81 63.0
arahy.Tifrunner.gnm1.ann1.T1KBZJ Arachis hypogaea HOM05D004051 ORTHO05D004480 6.8e-17 90.5 83 62.7
CSS0008906 Camellia sinensis var. sinensis HOM05D004051 ORTHO05D004480 8.8e-17 90.1 81 63.0
Migut.A00641 Erythranthe guttata HOM05D004051 ORTHO05D004480 8.8e-17 90.1 84 56.0
arahy.Tifrunner.gnm1.ann1.E0UY0G Arachis hypogaea HOM05D004051 ORTHO05D004480 1.2e-16 89.7 83 62.7
RcHm_v2.0_Chr7g0194731 Rosa chinensis HOM05D004051 ORTHO05D004480 1.2e-16 89.7 80 61.2
FAN08G0063 Fragaria x ananassa HOM05D004051 ORTHO05D004480 1.5e-16 89.4 80 61.2
Hma1.2p1_1461F.1_g285050 Hydrangea macrophylla HOM05D004051 ORTHO05D004480 1.5e-16 89.4 79 65.8
Hma1.2p1_2808F.1_g328863 Hydrangea macrophylla HOM05D004051 ORTHO05D004480 1.5e-16 89.4 79 65.8
Dinv38829 Davidia involucrata HOM05D004051 ORTHO05D004480 2.6e-16 88.6 81 61.7
Duzib205G1876 Durio zibethinus HOM05D004051 ORTHO05D004480 3.4e-16 88.2 79 62.0
PGR042G1109 Punica granatum HOM05D004051 ORTHO05D004480 3.4e-16 88.2 80 62.5
Gohir.D12G237933 Gossypium hirsutum HOM05D004051 ORTHO05D004480 4.4e-16 87.8 79 62.0
Gorai.008G254600 Gossypium raimondii HOM05D004051 ORTHO05D004480 4.4e-16 87.8 79 62.0
CiPaw.11G121000 Carya illinoinensis HOM05D004051 ORTHO05D004480 5.7e-16 87.4 80 62.5
FvH4_5g04640 Fragaria vesca HOM05D004051 ORTHO05D004480 7.5e-16 87.0 80 60.0
FAN18G0508 Fragaria x ananassa HOM05D004051 ORTHO05D004480 7.5e-16 87.0 80 60.0
Lalb_Chr05g0224141 Lupinus albus HOM05D004051 ORTHO05D004480 9.8e-16 86.7 79 65.8
TWI81G0780 Tripterygium wilfordii HOM05D004051 ORTHO05D004480 1.7e-15 85.9 80 62.5
Ah.07g197450 Amaranthus hybridus HOM05D004051 ORTHO05D004480 2.2e-15 85.5 87 55.2
Psat7g025560 Pisum sativum HOM05D004051 ORTHO05D004480 2.2e-15 85.5 80 61.2
Potri.003G140300 Populus trichocarpa HOM05D004051 ORTHO05D004480 2.2e-15 85.5 80 60.0
SalBow1G2120 Salvia bowleyana HOM05D004051 ORTHO05D004480 2.2e-15 85.5 79 62.0
Phvul.002G298100 Phaseolus vulgaris HOM05D004051 ORTHO05D004480 2.8e-15 85.1 81 59.3
QL09p009613 Quercus lobata HOM05D004051 ORTHO05D004480 2.8e-15 85.1 87 54.0
CiPaw.05G255100 Carya illinoinensis HOM05D004051 ORTHO05D004480 3.7e-15 84.7 86 55.8
SalBow1G7115 Salvia bowleyana HOM05D004051 ORTHO05D004480 3.7e-15 84.7 79 62.0
Dinv29295 Davidia involucrata HOM05D004051 ORTHO05D004480 4.8e-15 84.3 86 57.0
Gohir.A12G236600 Gossypium hirsutum HOM05D004051 ORTHO05D004480 4.8e-15 84.3 79 60.8
LjContig00312_ERROPOS870357g0027890 Lotus japonicus HOM05D004051 ORTHO05D004480 6.3e-15 84.0 80 63.8
SGA_v2.0_scaffold96G29014 Striga asiatica HOM05D004051 ORTHO05D004480 6.3e-15 84.0 77 61.0
Thecc.03G298400 Theobroma cacao HOM05D004051 ORTHO05D004480 6.3e-15 84.0 79 58.2
TPR.G25572 Trifolium pratense HOM05D004051 ORTHO05D004480 6.3e-15 84.0 84 58.3
arahy.Tifrunner.gnm1.ann1.ZDLG37 Arachis hypogaea HOM05D004051 ORTHO05D004480 8.3e-15 83.6 84 59.5
CiPaw.05G252200 Carya illinoinensis HOM05D004051 ORTHO05D004480 8.3e-15 83.6 86 52.3
Prupe.5G120400 Prunus persica HOM05D004051 ORTHO05D004480 8.3e-15 83.6 82 57.3
THA.LOC104815090 Tarenaya hassleriana HOM05D004051 ORTHO05D004480 8.3e-15 83.6 81 56.8
CSS0023187 Camellia sinensis var. sinensis HOM05D004051 ORTHO05D004480 1.4e-14 82.8 81 58.0
Glyma.11G017600 Glycine max HOM05D004051 ORTHO05D004480 1.4e-14 82.8 81 59.3
MD06G1107300 Malus domestica HOM05D004051 ORTHO05D004480 1.8e-14 82.4 79 55.7
Manes.02G009700 Manihot esculenta HOM05D004051 ORTHO05D004480 1.8e-14 82.4 80 61.2
QL02p030350 Quercus lobata HOM05D004051 ORTHO05D004480 1.8e-14 82.4 76 59.2
Actinidia04200 Actinidia chinensis HOM05D004051 ORTHO05D004480 2.4e-14 82.0 81 60.5
PSO063G6907 Papaver somniferum HOM05D004051 ORTHO05D004480 3.1e-14 81.6 79 53.2
CiPaw.05G255500 Carya illinoinensis HOM05D004051 ORTHO05D004480 5.4e-14 80.9 86 52.3
FAN01G1391 Fragaria x ananassa HOM05D004051 ORTHO05D004480 5.4e-14 80.9 83 53.0
FAN13G0943 Fragaria x ananassa HOM05D004051 ORTHO05D004480 5.4e-14 80.9 79 58.2
FvH4_7g31780 Fragaria vesca HOM05D004051 ORTHO05D004480 7.0e-14 80.5 83 53.0
DCAR_006488 Daucus carota HOM05D004051 ORTHO05D004480 1.6e-13 79.3 78 59.0
Gohir.D12G237800 Gossypium hirsutum HOM05D004051 ORTHO05D004480 1.6e-13 79.3 80 58.8
Lj4g0013283 Lotus japonicus HOM05D004051 ORTHO05D004480 2.7e-13 78.6 77 58.4
Nn3g19011 Nelumbo nucifera HOM05D004051 ORTHO05D004480 2.7e-13 78.6 83 55.4
Sed0007169 Sechium edule HOM05D004051 ORTHO05D004480 2.7e-13 78.6 87 55.2
AUR62010843 Chenopodium quinoa HOM05D004051 ORTHO05D004480 3.5e-13 78.2 82 54.9
Manes.06G159300 Manihot esculenta HOM05D004051 ORTHO05D004480 3.5e-13 78.2 80 56.2
Duzib084G0187 Durio zibethinus HOM05D000749 ORTHO05D005685 4.5e-13 77.8 76 57.9
Eucgr.E00869 Eucalyptus grandis HOM05D004051 ORTHO05D004480 4.5e-13 77.8 80 61.2
Gohir.D08G104000 Gossypium hirsutum HOM05D004051 ORTHO05D004480 4.5e-13 77.8 86 57.0
RcHm_v2.0_Chr1g0381011 Rosa chinensis HOM05D004051 ORTHO05D004480 4.5e-13 77.8 83 51.8
Sc13g0009750 Simmondsia chinensis HOM05D004051 ORTHO05D004480 4.5e-13 77.8 83 57.8
HanXRQChr13g0415281 Helianthus annuus HOM05D004051 ORTHO05D004480 7.7e-13 77.0 77 55.8
Hund11389 Selenicereus undatus HOM05D004051 ORTHO05D004480 7.7e-13 77.0 80 58.8
FAN18G2387 Fragaria x ananassa HOM05D004051 ORTHO05D004480 1.0e-12 76.6 76 57.9
TWI15G0384 Tripterygium wilfordii HOM05D004051 ORTHO05D004480 1.0e-12 76.6 80 58.8
Thhalv10026982m.g Eutrema salsugineum HOM05D004051 ORTHO05D004480 1.7e-12 75.9 78 53.8
Hund14219 Selenicereus undatus HOM05D004051 ORTHO05D004480 1.7e-12 75.9 76 57.9
Gorai.004G111400 Gossypium raimondii HOM05D004051 ORTHO05D004480 2.3e-12 75.5 86 55.8
Phvul.002G164300 Phaseolus vulgaris HOM05D004051 ORTHO05D004480 2.3e-12 75.5 81 54.3
Rhsim09G0205000 Rhododendron simsii HOM05D004051 ORTHO05D004480 2.3e-12 75.5 86 52.3
Actinidia03163 Actinidia chinensis HOM05D004051 ORTHO05D004480 2.9e-12 75.1 87 47.1
Ah.12g052570 Amaranthus hybridus HOM05D000749 ORTHO05D005685 2.9e-12 75.1 84 52.4
AL7G29460 Arabidopsis lyrata HOM05D004051 ORTHO05D004480 2.9e-12 75.1 80 52.5
Ciclev10006352m.g Citrus clementina HOM05D004051 ORTHO05D004480 2.9e-12 75.1 79 54.4
FAN10G0142 Fragaria x ananassa HOM05D004051 ORTHO05D004480 2.9e-12 75.1 83 50.6
Hund04853 Selenicereus undatus HOM05D004051 ORTHO05D004480 2.9e-12 75.1 85 54.1
BcaNung01095 Brassica carinata HOM05D004051 ORTHO05D004480 3.8e-12 74.7 78 52.6
BcaNung04241 Brassica carinata HOM05D004051 ORTHO05D004480 3.8e-12 74.7 76 52.6
CANSAT21G2574 Cannabis sativa HOM05D004051 ORTHO05D004480 5.0e-12 74.3 83 49.4
HPP92_020160 Vanilla planifolia HOM05D004051 ORTHO05D004480 5.0e-12 74.3 92 48.9
PGR042G3499 Punica granatum HOM05D004051 ORTHO05D004480 6.6e-12 73.9 86 47.7
vmacro11468 Vaccinium macrocarpon HOM05D004051 ORTHO05D004480 6.6e-12 73.9 77 55.8
Atru.chr1.148 Acer truncatum HOM05D004051 ORTHO05D004480 8.6e-12 73.6 82 54.9
A02p40750 Brassica napus HOM05D004051 ORTHO05D004480 8.6e-12 73.6 85 50.6
CDE09G0659 Ceratophyllum demersum HOM05D004051 ORTHO05D004480 8.6e-12 73.6 86 53.5
AUR62019374 Chenopodium quinoa HOM05D004051 ORTHO05D004480 8.6e-12 73.6 81 53.1
Ciclev10023430m.g Citrus clementina HOM05D004051 ORTHO05D004480 8.6e-12 73.6 81 59.3
BcaB07g29898 Brassica carinata HOM05D004051 ORTHO05D004480 1.1e-11 73.2 85 50.6
MBI06_g08462_MAGBIO Magnolia biondii HOM05D004051 ORTHO05D004480 1.1e-11 73.2 85 50.6
MD06G1107200 Malus domestica HOM05D004051 ORTHO05D004480 1.1e-11 73.2 76 51.3
Sc01g0010310 Simmondsia chinensis HOM05D004051 ORTHO05D004480 1.1e-11 73.2 83 55.4
Thecc.03G195700 Theobroma cacao HOM05D004051 ORTHO05D004480 1.1e-11 73.2 84 52.4
GSVIVG01038715001 Vitis vinifera HOM05D004051 ORTHO05D004480 1.1e-11 73.2 75 56.0
Thhalv10005218m.g Eutrema salsugineum HOM05D004051 ORTHO05D004480 1.5e-11 72.8 85 50.6
Sabra03G0101300 Salix brachista HOM05D004051 ORTHO05D004480 1.5e-11 72.8 87 51.7
Sp7g21840 Schrenkiella parvula HOM05D004051 ORTHO05D004480 1.5e-11 72.8 76 53.9
BcaC09g50935 Brassica carinata HOM05D004051 ORTHO05D004480 1.9e-11 72.4 80 51.2
Gohir.A08G096024 Gossypium hirsutum HOM05D004051 ORTHO05D004480 1.9e-11 72.4 86 54.7
Potri.012G011600 Populus trichocarpa HOM05D004051 ORTHO05D004480 1.9e-11 72.4 90 47.8
GSVIVG01019535001 Vitis vinifera HOM05D004051 ORTHO05D004480 1.9e-11 72.4 81 54.3
COL.COLO4_10706 Corchorus olitorius HOM05D004051 ORTHO05D004480 3.3e-11 71.6 73 57.5
FAN10G1914 Fragaria x ananassa HOM05D004051 ORTHO05D004480 3.3e-11 71.6 95 44.2
AL6G35560 Arabidopsis lyrata HOM05D004051 ORTHO05D004480 4.2e-11 71.2 79 53.2
MD01G1219400 Malus domestica HOM05D004051 ORTHO05D004480 4.2e-11 71.2 82 51.2
Sp2g23150 Schrenkiella parvula HOM05D004051 ORTHO05D004480 4.2e-11 71.2 82 52.4
BcaNung04081 Brassica carinata HOM05D004051 ORTHO05D004480 5.5e-11 70.9 78 51.3
CARHR231280 Cardamine hirsuta HOM05D004051 ORTHO05D004480 5.5e-11 70.9 78 47.4
CDE02G2345 Ceratophyllum demersum HOM05D004051 ORTHO05D004480 5.5e-11 70.9 80 50.0
FAN03G1224 Fragaria x ananassa HOM05D004051 ORTHO05D004480 5.5e-11 70.9 80 50.0
Atru.chr9.1978 Acer truncatum HOM05D004051 ORTHO05D004480 7.2e-11 70.5 77 55.8
Atru.chr9.1993 Acer truncatum HOM05D004051 ORTHO05D004480 7.2e-11 70.5 77 55.8
AT4G23885 Arabidopsis thaliana HOM05D004051 ORTHO05D004480 7.2e-11 70.5 81 51.9
BcaNung01808 Brassica carinata HOM05D004051 ORTHO05D004480 7.2e-11 70.5 85 50.6
Carub.0006s2191 Capsella rubella HOM05D004051 ORTHO05D004480 7.2e-11 70.5 79 53.2
Medtr8g099465 Medicago truncatula HOM05D004051 ORTHO05D004480 7.2e-11 70.5 75 52.0
ClCG01G000480 Citrullus lanatus HOM05D004051 ORTHO05D004480 9.5e-11 70.1 85 51.8
AT5G24165 Arabidopsis thaliana HOM05D004051 ORTHO05D004480 1.6e-10 69.3 79 51.9
BcaNung01214 Brassica carinata HOM05D004051 ORTHO05D004480 2.1e-10 68.9 81 53.1
CARHR189350 Cardamine hirsuta HOM05D004051 ORTHO05D004480 2.1e-10 68.9 79 51.9
HPP92_020177 Vanilla planifolia HOM05D004051 ORTHO05D004480 3.6e-10 68.2 89 47.2
Aa31LG6G7140 Aethionema arabicum HOM05D004051 ORTHO05D004480 4.7e-10 67.8 79 53.2
VMungo0251G1927 Vigna mungo HOM05D000749 ORTHO05D005685 4.7e-10 67.8 77 53.2
Carub.0007s1723 Capsella rubella HOM05D004051 ORTHO05D004480 8.0e-10 67.0 78 52.6
Sed0004965 Sechium edule HOM05D004051 ORTHO05D004480 8.0e-10 67.0 80 48.8
ClCG01G001670 Citrullus lanatus HOM05D004051 ORTHO05D004480 1.0e-09 66.6 86 50.0
DCAR_010606 Daucus carota HOM05D004051 ORTHO05D004480 1.0e-09 66.6 88 47.7
A03p54820 Brassica napus HOM05D004051 ORTHO05D004480 1.8e-09 65.9 75 49.3
A01p15190 Brassica napus HOM05D004051 ORTHO05D004480 2.3e-09 65.5 79 50.6
MELO3C005880.2 Cucumis melo HOM05D004051 ORTHO05D004480 2.3e-09 65.5 86 48.8
Lj2A167G43 Lonicera japonica HOM05D004051 ORTHO05D004480 2.3e-09 65.5 53 66.0
C07p53180 Brassica napus HOM05D004051 ORTHO05D004480 3.0e-09 65.1 73 49.3
BraA01t01457Z Brassica rapa HOM05D004051 ORTHO05D004480 4.0e-09 64.7 79 49.4
BraA03t14549Z Brassica rapa HOM05D004051 ORTHO05D004480 4.0e-09 64.7 75 48.0
Haze_09066 Corylus avellana HOM05D004051 ORTHO05D004480 5.2e-09 64.3 52 65.4
C01p19120 Brassica napus HOM05D004051 ORTHO05D004480 6.8e-09 63.9 79 48.1
EL10Ac3g05304 Beta vulgaris HOM05D004051 ORTHO05D004480 1.5e-08 62.8 83 45.8
Ca_17505_v3 Cicer arietinum L. HOM05D000749 ORTHO05D005685 1.5e-08 62.8 80 51.2
THA.LOC104821369 Tarenaya hassleriana HOM05D004051 ORTHO05D004480 2.0e-08 62.4 87 43.7
BolC1t01838H Brassica oleracea HOM05D004051 ORTHO05D004480 3.4e-08 61.6 77 46.8
BolC7t44882H Brassica oleracea HOM05D004051 ORTHO05D004480 4.4e-08 61.2 82 47.6
C07p43550 Brassica napus HOM05D004051 ORTHO05D004480 5.7e-08 60.8 82 47.6
FAN13G0743 Fragaria x ananassa HOM05D004051 ORTHO05D004480 2.8e-07 58.5 73 46.6
Sed0015186 Sechium edule HOM05D004051 ORTHO05D004480 2.8e-07 58.5 83 53.0
A06p35000 Brassica napus HOM05D004051 ORTHO05D004480 3.7e-07 58.2 82 46.3
BraA06t26423Z Brassica rapa HOM05D004051 ORTHO05D004480 3.7e-07 58.2 82 46.3
Aa31LG11G3430 Aethionema arabicum HOM05D004051 ORTHO05D004480 1.1e-06 56.6 84 44.0
CsaV3_5G001830 Cucumis sativus L. HOM05D000749 ORTHO05D005685 1.8e-06 55.8 89 43.8
AagrBONN_evm.TU.Sc2ySwM_369.239 Anthoceros agrestis HOM05D004051 ORTHO05D004480 2.4e-06 55.5 80 46.2
SalBow6G1847 Salvia bowleyana HOM05D039222 ORTHO05D004480 2.4e-06 55.5 49 61.2
FAN06G1266 Fragaria x ananassa HOM05D004051 ORTHO05D004480 7.0e-06 53.9 74 45.9


User provided reference genes

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