Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen08g030630 Solanum pennellii HOM05D007590 ORTHO05D007875 1.4e-50 202.6 101 100.0
Solyc08g082370.1 Solanum lycopersicum HOM05D007590 ORTHO05D007875 2.4e-50 201.8 101 99.0
PGSC0003DMG400012280 Solanum tuberosum HOM05D007590 ORTHO05D007875 1.5e-47 192.6 101 96.0
Peaxi162Scf00102g00178 Petunia axillaris HOM05D007590 ORTHO05D007875 5.5e-26 120.9 107 64.5
Nitab4.5_0002782g0040 Nicotiana tabacum HOM05D007590 ORTHO05D007875 1.2e-25 119.8 99 65.7
Nitab4.5_0001231g0140 Nicotiana tabacum HOM05D007590 ORTHO05D007875 2.3e-24 115.5 96 65.6
Peaxi162Scf00074g00097 Petunia axillaris HOM05D007590 ORTHO05D007875 1.5e-23 112.8 85 70.6
Cfa012011 Carpinus fangiana HOM05D007590 ORTHO05D007875 4.5e-20 101.3 115 53.9
Hma1.2p1_1746F.1_g300410 Hydrangea macrophylla HOM05D007590 ORTHO05D007875 4.5e-20 101.3 107 57.0
Cc08_g16080 Coffea canephora HOM05D007590 ORTHO05D007875 2.2e-19 99.0 112 50.9
Prupe.5G120200 Prunus persica HOM05D007590 ORTHO05D007875 2.2e-19 99.0 106 52.8
Sopen08g004200 Solanum pennellii HOM05D007590 ORTHO05D007875 3.8e-19 98.2 112 55.4
Dinv38831 Davidia involucrata HOM05D005474 ORTHO05D006551 1.1e-18 96.7 100 55.0
Lsat_1_v5_gn_6_83961 Lactuca sativa HOM05D007590 ORTHO05D007875 1.1e-18 96.7 111 52.3
MSTRG.11924 Avicennia marina HOM05D007590 ORTHO05D007875 2.5e-18 95.5 103 52.4
HanXRQChr03g0083501 Helianthus annuus HOM05D007590 ORTHO05D007875 2.5e-18 95.5 108 50.0
QL02p030422 Quercus lobata HOM05D007590 ORTHO05D007875 2.5e-18 95.5 109 51.4
Nn1g01873 Nelumbo nucifera HOM05D007590 ORTHO05D007875 4.2e-18 94.7 100 53.0
PGSC0003DMG400005790 Solanum tuberosum HOM05D007590 ORTHO05D007875 7.2e-18 94.0 112 54.5
TAR636G1032 Trochodendron aralioides HOM05D007590 ORTHO05D007875 7.2e-18 94.0 104 56.7
LjContig00312_ERROPOS870357g0000452 Lotus japonicus HOM05D007590 ORTHO05D007875 1.2e-17 93.2 110 48.2
Lsat_1_v5_gn_3_10720 Lactuca sativa HOM05D007590 ORTHO05D007875 2.1e-17 92.4 112 50.0
Phvul.002G164500 Phaseolus vulgaris HOM05D007590 ORTHO05D007875 3.6e-17 91.7 100 49.0
MSTRG.25673 Avicennia marina HOM05D007590 ORTHO05D007875 4.7e-17 91.3 104 52.9
Potri.001G091500 Populus trichocarpa HOM05D007590 ORTHO05D007875 4.7e-17 91.3 100 49.0
CiPaw.12G082900 Carya illinoinensis HOM05D007590 ORTHO05D007875 6.1e-17 90.9 106 53.8
TAR374G1746 Trochodendron aralioides HOM05D007590 ORTHO05D007875 6.1e-17 90.9 100 57.0
Rhsim02G0243500 Rhododendron simsii HOM05D007590 ORTHO05D007875 1.8e-16 89.4 105 55.2
FAN08G0943 Fragaria x ananassa HOM05D007590 ORTHO05D007875 2.3e-16 89.0 111 52.3
FAN13G0413 Fragaria x ananassa HOM05D007590 ORTHO05D007875 2.3e-16 89.0 111 52.3
TAR375G1006 Trochodendron aralioides HOM05D007590 ORTHO05D007875 2.3e-16 89.0 99 52.5
TAR629G1835 Trochodendron aralioides HOM05D007590 ORTHO05D007875 3.0e-16 88.6 99 52.5
TAR629G2201 Trochodendron aralioides HOM05D007590 ORTHO05D007875 8.8e-16 87.0 102 51.0
CiPaw.11G121300 Carya illinoinensis HOM05D007590 ORTHO05D007875 1.1e-15 86.7 99 54.5
TPR.G25602 Trifolium pratense HOM05D007590 ORTHO05D007875 1.1e-15 86.7 97 48.5
CSS0045762 Camellia sinensis var. sinensis HOM05D007590 ORTHO05D007875 1.5e-15 86.3 105 52.4
FAN04G0970 Fragaria x ananassa HOM05D007590 ORTHO05D007875 2.0e-15 85.9 111 51.4
Medtr5g009260 Medicago truncatula HOM05D007590 ORTHO05D007875 2.6e-15 85.5 97 49.5
AUR62019841 Chenopodium quinoa HOM05D007590 ORTHO05D007875 7.4e-15 84.0 104 51.9
Oeu063521.1 Olea europaea HOM05D007590 ORTHO05D007875 7.4e-15 84.0 103 45.6
SGA_v2.0_scaffold305G47972 Striga asiatica HOM05D007590 ORTHO05D007875 7.4e-15 84.0 101 44.6
Actinidia22161 Actinidia chinensis HOM05D007590 ORTHO05D007875 1.7e-14 82.8 98 49.0
AUR62010841 Chenopodium quinoa HOM05D007590 ORTHO05D007875 1.7e-14 82.8 104 51.0
RcHm_v2.0_Chr7g0194781 Rosa chinensis HOM05D007590 ORTHO05D007875 2.2e-14 82.4 115 50.4
Nn3g19015 Nelumbo nucifera HOM05D007590 ORTHO05D007875 2.8e-14 82.0 102 51.0
Manes.01G049200 Manihot esculenta HOM05D007590 ORTHO05D007875 3.7e-14 81.6 93 53.8
Lalb_Chr05g0211541 Lupinus albus HOM05D007590 ORTHO05D007875 6.3e-14 80.9 107 47.7
Aqoxy5G04230 Aquilegia oxysepala HOM05D007590 ORTHO05D007875 8.2e-14 80.5 104 50.0
Manes.02G009900 Manihot esculenta HOM05D007590 ORTHO05D007875 8.2e-14 80.5 111 46.8
Sabra01G0067900 Salix brachista HOM05D007590 ORTHO05D007875 1.1e-13 80.1 101 43.6
Ciclev10022592m.g Citrus clementina HOM05D007590 ORTHO05D007875 1.4e-13 79.7 103 47.6
CDE10G0927 Ceratophyllum demersum HOM05D007590 ORTHO05D007875 1.8e-13 79.3 101 42.6
Potri.003G140100 Populus trichocarpa HOM05D007590 ORTHO05D007875 1.8e-13 79.3 100 46.0
Ca_24513_v3 Cicer arietinum L. HOM05D007590 ORTHO05D007875 2.4e-13 79.0 98 44.9
Ca_29733_v3 Cicer arietinum L. HOM05D007590 ORTHO05D007875 2.4e-13 79.0 98 44.9
ClCG07G011620 Citrullus lanatus HOM05D007590 ORTHO05D007875 4.1e-13 78.2 109 45.0
CsaV3_4G006590 Cucumis sativus L. HOM05D007590 ORTHO05D007875 4.1e-13 78.2 110 49.1
Manes.02G010000 Manihot esculenta HOM05D007590 ORTHO05D007875 5.3e-13 77.8 107 45.8
Ah.12g052560 Amaranthus hybridus HOM05D007590 ORTHO05D007875 9.1e-13 77.0 116 44.8
Glyma.01G225600 Glycine max HOM05D007590 ORTHO05D007875 9.1e-13 77.0 104 47.1
CANSAT21G0370 Cannabis sativa HOM05D007590 ORTHO05D007875 1.2e-12 76.6 121 46.3
CDE10G0175 Ceratophyllum demersum HOM05D007590 ORTHO05D007875 1.2e-12 76.6 93 43.0
Migut.A00642 Erythranthe guttata HOM05D007590 ORTHO05D007875 1.2e-12 76.6 104 43.3
Sed0026863 Sechium edule HOM05D007590 ORTHO05D007875 1.2e-12 76.6 116 42.2
Thecc.03G298200 Theobroma cacao HOM05D007590 ORTHO05D007875 2.0e-12 75.9 109 44.0
EL10Ac5g12916 Beta vulgaris HOM05D007590 ORTHO05D007875 2.6e-12 75.5 82 56.1
SalBow1G4032 Salvia bowleyana HOM05D007590 ORTHO05D007875 2.6e-12 75.5 93 41.9
SalBow1G6340 Salvia bowleyana HOM05D007590 ORTHO05D007875 2.6e-12 75.5 93 41.9
CiPaw.12G082700 Carya illinoinensis HOM05D007590 ORTHO05D007875 3.5e-12 75.1 100 50.0
Sabra03G0101100 Salix brachista HOM05D007590 ORTHO05D007875 3.5e-12 75.1 100 46.0
Sed0003477 Sechium edule HOM05D007590 ORTHO05D007875 4.5e-12 74.7 103 45.6
DCAR_006487 Daucus carota HOM05D007590 ORTHO05D007875 5.9e-12 74.3 108 48.1
Duzib205G1174 Durio zibethinus HOM05D007590 ORTHO05D007875 1.3e-11 73.2 106 43.4
MELO3C016294.2 Cucumis melo HOM05D007590 ORTHO05D007875 5.0e-11 71.2 111 45.9
Gorai.008G254500 Gossypium raimondii HOM05D007590 ORTHO05D007875 5.0e-11 71.2 101 48.5
Gohir.D12G237700 Gossypium hirsutum HOM05D007590 ORTHO05D007875 6.5e-11 70.9 101 47.5
Gohir.D12G237966 Gossypium hirsutum HOM05D007590 ORTHO05D007875 6.5e-11 70.9 101 47.5
Cpa.g.sc79.34 Carica papaya HOM05D007590 ORTHO05D007875 1.1e-10 70.1 110 40.9
Glyma.11G017400 Glycine max HOM05D007590 ORTHO05D007875 4.2e-10 68.2 104 46.2
Gohir.A12G236500 Gossypium hirsutum HOM05D007590 ORTHO05D007875 4.2e-10 68.2 103 48.5
Duzib068G0682 Durio zibethinus HOM05D007590 ORTHO05D007875 2.1e-09 65.9 108 41.7
Duzib084G0874 Durio zibethinus HOM05D007590 ORTHO05D007875 6.1e-09 64.3 102 42.2
Eucgr.D01739 Eucalyptus grandis HOM05D007590 ORTHO05D007875 4.0e-08 61.6 136 36.8
TWI60G0225 Tripterygium wilfordii HOM05D007590 ORTHO05D007875 1.1e-07 60.1 113 42.5
BolC9t54630H Brassica oleracea HOM05D010600 ORTHO05D007875 3.3e-07 58.5 110 37.3
MBI06_g08455_MAGBIO Magnolia biondii HOM05D007590 ORTHO05D007875 3.3e-07 58.5 57 52.6
Sc07g0010040 Simmondsia chinensis HOM05D007590 ORTHO05D007875 3.3e-07 58.5 121 41.3
Thhalv10023875m.g Eutrema salsugineum HOM05D010600 ORTHO05D007875 4.4e-07 58.2 119 37.0
Aa31LG2G1420 Aethionema arabicum HOM05D010600 ORTHO05D007875 5.7e-07 57.8 114 37.7
BcaC04g22619 Brassica carinata HOM05D010600 ORTHO05D007875 5.7e-07 57.8 109 36.7
COL.COLO4_10703 Corchorus olitorius HOM05D007590 ORTHO05D007875 5.7e-07 57.8 74 48.6
C09p17280 Brassica napus HOM05D010600 ORTHO05D007875 7.5e-07 57.4 110 37.3
Haze_09063 Corylus avellana HOM05D007590 ORTHO05D007875 7.5e-07 57.4 73 49.3
Duzib068G0902 Durio zibethinus HOM05D007590 ORTHO05D007875 7.5e-07 57.4 96 44.8
ATR0602G105 Amborella trichopoda HOM05D007590 ORTHO05D007875 1.3e-06 56.6 122 33.6
Gohir.A02G100200 Gossypium hirsutum HOM05D007590 ORTHO05D007875 2.2e-06 55.8 93 40.9
AL2G10440 Arabidopsis lyrata HOM05D010600 ORTHO05D007875 3.7e-06 55.1 113 38.1
A09p14360 Brassica napus HOM05D010600 ORTHO05D007875 4.8e-06 54.7 111 36.9
BraA09t37083Z Brassica rapa HOM05D010600 ORTHO05D007875 4.8e-06 54.7 111 36.9
Carub.0002s0036 Capsella rubella HOM05D010600 ORTHO05D007875 4.8e-06 54.7 116 36.2
BcaB07g31463 Brassica carinata HOM05D010600 ORTHO05D007875 8.2e-06 53.9 114 37.7


User provided reference genes

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