Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen08g030510 Solanum pennellii HOM05D007666 ORTHO05D009567 4.0e-189 664.8 392 100.0
PGSC0003DMG400012289 Solanum tuberosum HOM05D007666 ORTHO05D009567 1.4e-173 613.2 396 93.7
Nitab4.5_0001231g0060 Nicotiana tabacum HOM05D007666 ORTHO05D009567 1.5e-127 460.3 396 74.5
Peaxi162Scf00074g00106 Petunia axillaris HOM05D007666 ORTHO05D009567 4.9e-123 445.3 395 71.9
Nitab4.5_0005537g0030 Nicotiana tabacum HOM05D007666 ORTHO05D009567 1.4e-122 443.7 391 67.3
Solyc08g082230.3 Solanum lycopersicum HOM05D007666 ORTHO05D009567 2.2e-83 313.5 217 88.0
GSVIVG01019521001 Vitis vinifera HOM05D007666 ORTHO05D009567 5.6e-58 229.2 232 53.0
Rhsim02G0242700 Rhododendron simsii HOM05D007666 ORTHO05D009567 1.4e-56 224.6 407 44.5
Dinv38838 Davidia involucrata HOM05D007666 ORTHO05D009567 1.3e-54 218.0 339 41.6
Thecc.03G296800 Theobroma cacao HOM05D007666 ORTHO05D009567 8.3e-54 215.3 224 51.8
CSS0011760 Camellia sinensis var. sinensis HOM05D007666 ORTHO05D009567 2.4e-53 213.8 402 39.1
MELO3C016286.2 Cucumis melo HOM05D007666 ORTHO05D009567 1.6e-52 211.1 233 52.4
CsaV3_4G006520 Cucumis sativus L. HOM05D007666 ORTHO05D009567 1.0e-51 208.4 226 53.1
ClCG07G014990 Citrullus lanatus HOM05D007666 ORTHO05D009567 1.3e-51 208.0 365 46.6
Duzib068G1371 Durio zibethinus HOM05D007666 ORTHO05D009567 2.3e-51 207.2 224 50.9
Potri.001G092300 Populus trichocarpa HOM05D007666 ORTHO05D009567 2.3e-51 207.2 224 53.6
Potri.003G139400 Populus trichocarpa HOM05D007666 ORTHO05D009567 5.0e-51 206.1 232 49.6
Aqoxy5G04207 Aquilegia oxysepala HOM05D007666 ORTHO05D009567 6.6e-51 205.7 232 52.2
RcHm_v2.0_Chr7g0195021 Rosa chinensis HOM05D007666 ORTHO05D009567 4.3e-50 203.0 252 48.0
Gorai.003G080900 Gossypium raimondii HOM05D007666 ORTHO05D009567 5.6e-50 202.6 226 49.1
Gohir.D03G082600 Gossypium hirsutum HOM05D007666 ORTHO05D009567 1.6e-49 201.1 226 49.1
Sed0007649 Sechium edule HOM05D007666 ORTHO05D009567 2.1e-49 200.7 225 52.0
Cpa.g.sc79.41 Carica papaya HOM05D007666 ORTHO05D009567 6.2e-49 199.1 404 36.6
FAN08G0521 Fragaria x ananassa HOM05D007666 ORTHO05D009567 1.4e-48 198.0 234 50.0
Hma1.2p1_0229F.1_g097150 Hydrangea macrophylla HOM05D007666 ORTHO05D009567 1.4e-48 198.0 231 51.1
Prupe.5G117900 Prunus persica HOM05D007666 ORTHO05D009567 1.4e-48 198.0 397 37.5
Actinidia22150 Actinidia chinensis HOM05D007666 ORTHO05D009567 1.8e-48 197.6 220 53.2
PSO135G0060 Papaver somniferum HOM05D007666 ORTHO05D009567 4.0e-48 196.4 238 48.3
Manes.01G049375 Manihot esculenta HOM05D007666 ORTHO05D009567 6.8e-48 195.7 226 49.6
Sed0008321 Sechium edule HOM05D007666 ORTHO05D009567 5.8e-47 192.6 241 50.2
Atru.chr9.2008 Acer truncatum HOM05D007666 ORTHO05D009567 7.5e-47 192.2 237 46.4
MSTRG.25667 Avicennia marina HOM05D007666 ORTHO05D009567 2.2e-46 190.7 249 46.2
PSO384G2287 Papaver somniferum HOM05D007666 ORTHO05D009567 2.2e-46 190.7 238 46.6
Sabra03G0100600 Salix brachista HOM05D007666 ORTHO05D009567 3.7e-46 189.9 232 49.6
Ciclev10020669m.g Citrus clementina HOM05D007666 ORTHO05D009567 2.4e-45 187.2 231 48.1
TWI60G1340 Tripterygium wilfordii HOM05D007666 ORTHO05D009567 7.0e-45 185.7 239 46.9
HanXRQChr06g0166511 Helianthus annuus HOM05D007666 ORTHO05D009567 2.0e-44 184.1 244 42.2
TAR636G3598 Trochodendron aralioides HOM05D007666 ORTHO05D009567 2.0e-44 184.1 229 48.5
FAN18G2245 Fragaria x ananassa HOM05D007666 ORTHO05D009567 3.5e-44 183.3 404 34.2
MD06G1105600 Malus domestica HOM05D007666 ORTHO05D009567 3.5e-44 183.3 412 35.7
FvH4_5g04480 Fragaria vesca HOM05D007666 ORTHO05D009567 4.6e-44 183.0 404 34.2
Gohir.A02G101700 Gossypium hirsutum HOM05D007666 ORTHO05D009567 1.0e-43 181.8 226 46.9
FAN13G3316 Fragaria x ananassa HOM05D007666 ORTHO05D009567 1.3e-43 181.4 404 33.9
FAN18G0717 Fragaria x ananassa HOM05D007666 ORTHO05D009567 1.7e-43 181.0 404 33.9
QL02p030815 Quercus lobata HOM05D007666 ORTHO05D009567 5.0e-43 179.5 242 45.5
CiPaw.12G083800 Carya illinoinensis HOM05D007666 ORTHO05D009567 2.5e-42 177.2 409 34.5
CiPaw.11G122000 Carya illinoinensis HOM05D007666 ORTHO05D009567 1.6e-41 174.5 335 37.0
Migut.A00661 Erythranthe guttata HOM05D007666 ORTHO05D009567 2.1e-41 174.1 224 49.6
Lj2C168T16 Lonicera japonica HOM05D007666 ORTHO05D009567 1.8e-40 171.0 207 50.2
EL10Ac5g12908 Beta vulgaris HOM05D007666 ORTHO05D009567 6.8e-40 169.1 239 41.4
Hund14226 Selenicereus undatus HOM05D007666 ORTHO05D009567 5.8e-39 166.0 229 46.3
Thhalv10023582m.g Eutrema salsugineum HOM05D007666 ORTHO05D009567 1.3e-38 164.9 265 41.1
MBI07_g38452_MAGBIO Magnolia biondii HOM05D007666 ORTHO05D009567 2.2e-38 164.1 328 36.6
Ah.07g197340 Amaranthus hybridus HOM05D007666 ORTHO05D009567 3.7e-38 163.3 243 38.7
Gorai.006G207700 Gossypium raimondii HOM05D007666 ORTHO05D009567 3.7e-38 163.3 214 41.1
Gohir.A09G190500 Gossypium hirsutum HOM05D007666 ORTHO05D009567 4.9e-38 162.9 214 41.1
Solyc08g082240.1 Solanum lycopersicum HOM05D007666 ORTHO05D009567 4.9e-38 162.9 94 97.9
ECA246G0366 Erigeron canadensis HOM05D007666 ORTHO05D009567 1.1e-37 161.8 383 33.4
CARHR046550 Cardamine hirsuta HOM05D007666 ORTHO05D009567 7.1e-37 159.1 242 42.1
SGA_v2.0_scaffold305G47963 Striga asiatica HOM05D007666 ORTHO05D009567 7.1e-37 159.1 224 46.0
AL2G10470 Arabidopsis lyrata HOM05D007666 ORTHO05D009567 1.6e-36 157.9 242 40.1
Gohir.D09G185200 Gossypium hirsutum HOM05D007666 ORTHO05D009567 2.7e-36 157.1 214 40.2
AUR62010832 Chenopodium quinoa HOM05D007666 ORTHO05D009567 4.6e-36 156.4 378 33.6
Carub.0002s0039 Capsella rubella HOM05D007666 ORTHO05D009567 5.1e-35 152.9 263 37.6
AT1G64385 Arabidopsis thaliana HOM05D007666 ORTHO05D009567 6.6e-35 152.5 244 39.8
DCAR_005041 Daucus carota HOM05D007666 ORTHO05D009567 2.5e-34 150.6 202 48.0
COL.COLO4_10690 Corchorus olitorius HOM05D007666 ORTHO05D009567 4.3e-34 149.8 239 43.1
ATR0188G013 Amborella trichopoda HOM05D007666 ORTHO05D009567 5.6e-34 149.4 224 42.0
THA.LOC104817649 Tarenaya hassleriana HOM05D007666 ORTHO05D009567 5.6e-34 149.4 251 39.8
Cc08_g15990 Coffea canephora HOM05D007666 ORTHO05D009567 1.6e-33 147.9 405 40.7
vmacro11431 Vaccinium macrocarpon HOM05D007666 ORTHO05D009567 3.6e-33 146.7 350 33.7
SalBow1G7426 Salvia bowleyana HOM05D007666 ORTHO05D009567 1.8e-32 144.4 223 43.0
Lsat_1_v5_gn_3_10540 Lactuca sativa HOM05D007666 ORTHO05D009567 2.4e-32 144.1 233 40.3
Dinv37538 Davidia involucrata HOM05D007666 ORTHO05D009567 5.2e-32 142.9 217 43.8
SpUn0393_0010 Schrenkiella parvula HOM05D007666 ORTHO05D009567 1.5e-31 141.4 241 36.9
HPP92_005518 Vanilla planifolia HOM05D007666 ORTHO05D009567 4.4e-31 139.8 219 37.9
BcaB07g31505 Brassica carinata HOM05D007666 ORTHO05D009567 7.6e-31 139.0 234 42.3
C09p17230 Brassica napus HOM05D007666 ORTHO05D009567 7.6e-31 139.0 235 40.9
BolC9t54623H Brassica oleracea HOM05D007666 ORTHO05D009567 7.6e-31 139.0 235 40.9
BcaC04g22624 Brassica carinata HOM05D007666 ORTHO05D009567 2.9e-30 137.1 235 39.6
BraA09t37080Z Brassica rapa HOM05D007666 ORTHO05D009567 4.9e-30 136.3 236 39.4
Duzib205G0056 Durio zibethinus HOM05D007666 ORTHO05D009567 6.4e-30 136.0 236 39.4
A09p14330 Brassica napus HOM05D007666 ORTHO05D009567 8.4e-30 135.6 234 39.7
Actinidia04207 Actinidia chinensis HOM05D007666 ORTHO05D009567 3.0e-27 127.1 202 40.6
AUR62019830 Chenopodium quinoa HOM05D007666 ORTHO05D009567 5.1e-27 126.3 197 42.6
Aa31LG2G1390 Aethionema arabicum HOM05D007666 ORTHO05D009567 8.6e-27 125.6 208 41.8
Nn3g19029 Nelumbo nucifera HOM05D007666 ORTHO05D009567 5.6e-26 122.9 156 51.9
Zm00001eb344230 Zea mays HOM05D007666 ORTHO05D009567 7.3e-26 122.5 218 41.3
Atru.chr2.3612 Acer truncatum HOM05D007666 ORTHO05D009567 2.6e-23 114.0 161 44.1
MD14G1127900 Malus domestica HOM05D007666 ORTHO05D009567 3.5e-20 103.6 183 40.4
Dinv25345 Davidia involucrata HOM05D003589 ORTHO05D005170 2.6e-15 87.4 216 33.3
Aqoxy4G02429 Aquilegia oxysepala HOM05D003589 ORTHO05D005170 1.7e-14 84.7 218 33.0
SEGI_11810 Sequoiadendron giganteum HOM05D003589 ORTHO05D005170 1.4e-13 81.6 197 34.0
Dinv16976 Davidia involucrata HOM05D003589 ORTHO05D005170 1.9e-13 81.3 214 31.8
FAN04G1782 Fragaria x ananassa HOM05D007666 ORTHO05D009567 1.8e-11 74.7 247 26.3
Ciclev10011425m.g Citrus clementina HOM05D003589 ORTHO05D005170 5.1e-11 73.2 222 32.4
PSO170G6362 Papaver somniferum HOM05D003589 ORTHO05D005170 6.7e-11 72.8 224 30.8
FAN09G1607 Fragaria x ananassa HOM05D003589 ORTHO05D005170 1.9e-10 71.2 217 29.0
ATR1127G101 Amborella trichopoda HOM05D003589 ORTHO05D005170 2.5e-10 70.9 230 26.5
RcHm_v2.0_Chr3g0460451 Rosa chinensis HOM05D003589 ORTHO05D005170 3.3e-10 70.5 223 29.1
Potri.016G136900 Populus trichocarpa HOM05D003589 ORTHO05D005170 4.3e-10 70.1 231 25.1
FvH4_6g09850 Fragaria vesca HOM05D003589 ORTHO05D005170 7.4e-10 69.3 218 28.0
Manes.09G118000 Manihot esculenta HOM05D003589 ORTHO05D005170 1.3e-09 68.6 221 28.5
Actinidia20793 Actinidia chinensis HOM05D003589 ORTHO05D005170 1.1e-08 65.5 214 30.4
EL10Ac7g17103 Beta vulgaris HOM05D003589 ORTHO05D005170 1.8e-08 64.7 219 29.2
PGSC0003DMG400026790 Solanum tuberosum HOM05D003589 ORTHO05D005170 4.0e-08 63.5 214 29.9
COL.COLO4_10689 Corchorus olitorius HOM05D007666 ORTHO05D009567 6.9e-08 62.8 103 36.9
Solyc09g015530.3 Solanum lycopersicum HOM05D003589 ORTHO05D005170 6.9e-08 62.8 205 31.2
Cpa.g.sc19.55 Carica papaya HOM05D003589 ORTHO05D005170 1.2e-07 62.0 163 29.4
Atru.chr8.113 Acer truncatum HOM05D003589 ORTHO05D005170 2.6e-07 60.8 209 29.7
Thecc.04G151400 Theobroma cacao HOM05D003589 ORTHO05D005170 1.3e-06 58.5 219 26.5
Duzib151G0965 Durio zibethinus HOM05D003589 ORTHO05D005170 2.9e-06 57.4 218 26.6
CsaV3_6G002320 Cucumis sativus L. HOM05D003589 ORTHO05D005170 3.8e-06 57.0 185 25.4


User provided reference genes

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