Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc08g082090.1 Solanum lycopersicum HOM05D005006 ORTHO05D005903 4.9e-79 297.7 152 100.0
Sopen08g030380 Solanum pennellii HOM05D005006 ORTHO05D005903 4.9e-79 297.7 152 100.0
PGSC0003DMG400012296 Solanum tuberosum HOM05D005006 ORTHO05D005903 6.7e-76 287.3 152 95.4
Nitab4.5_0007099g0020 Nicotiana tabacum HOM05D005006 ORTHO05D005903 1.7e-55 219.5 149 77.9
Dinv37546 Davidia involucrata HOM05D005006 ORTHO05D005903 1.3e-47 193.4 149 72.5
Peaxi162Scf00074g01119 Petunia axillaris HOM05D005006 ORTHO05D005903 4.2e-46 188.3 129 77.5
Cc08_g15850 Coffea canephora HOM05D005006 ORTHO05D005903 6.1e-45 184.5 158 65.8
PGR031G0908 Punica granatum HOM05D005006 ORTHO05D005903 5.7e-43 177.9 154 63.6
Manes.02G011900 Manihot esculenta HOM05D005006 ORTHO05D005903 7.4e-43 177.6 151 65.6
Potri.001G093500 Populus trichocarpa HOM05D005006 ORTHO05D005903 2.2e-42 176.0 149 64.4
FAN18G2980 Fragaria x ananassa HOM05D005006 ORTHO05D005903 3.1e-41 172.2 159 61.6
FAN13G1208 Fragaria x ananassa HOM05D005006 ORTHO05D005903 4.1e-41 171.8 159 61.6
FAN18G0263 Fragaria x ananassa HOM05D005006 ORTHO05D005903 4.1e-41 171.8 159 61.6
Oeu061095.1 Olea europaea HOM05D005006 ORTHO05D005903 1.6e-40 169.9 150 62.7
Haze_08652 Corylus avellana HOM05D005006 ORTHO05D005903 2.0e-40 169.5 149 63.1
FvH4_5g04150 Fragaria vesca HOM05D005006 ORTHO05D005903 2.6e-40 169.1 159 61.0
Haze_08651 Corylus avellana HOM05D005006 ORTHO05D005903 4.5e-40 168.3 149 62.4
CiPaw.11G123200 Carya illinoinensis HOM05D005006 ORTHO05D005903 1.0e-39 167.2 151 64.2
RcHm_v2.0_Chr7g0195351 Rosa chinensis HOM05D005006 ORTHO05D005903 1.0e-39 167.2 163 58.9
CANSAT21G0143 Cannabis sativa HOM05D005006 ORTHO05D005903 3.8e-39 165.2 167 62.3
Cfa012825 Carpinus fangiana HOM05D005006 ORTHO05D005903 1.5e-38 163.3 149 61.7
Ciclev10022492m.g Citrus clementina HOM05D005006 ORTHO05D005903 1.9e-38 162.9 157 61.1
Eucgr.D01714 Eucalyptus grandis HOM05D005006 ORTHO05D005903 3.2e-38 162.2 153 60.8
TAR629G3139 Trochodendron aralioides HOM05D005006 ORTHO05D005903 9.4e-38 160.6 151 62.3
Actinidia01391 Actinidia chinensis HOM05D005006 ORTHO05D005903 1.6e-37 159.8 147 59.2
Sed0010968 Sechium edule HOM05D005006 ORTHO05D005903 2.7e-37 159.1 149 59.7
QL02p031286 Quercus lobata HOM05D005006 ORTHO05D005903 6.1e-37 157.9 148 60.8
Hma1.2p1_0359F.1_g135340 Hydrangea macrophylla HOM05D005006 ORTHO05D005903 1.4e-36 156.8 155 60.6
Manes.01G045300 Manihot esculenta HOM05D005006 ORTHO05D005903 2.0e-35 152.9 156 59.6
DCAR_027715 Daucus carota HOM05D005006 ORTHO05D005903 2.6e-35 152.5 162 57.4
Sabra01G0069400 Salix brachista HOM05D000089 ORTHO05D003403 2.6e-35 152.5 133 63.9
COL.COLO4_21708 Corchorus olitorius HOM05D005006 ORTHO05D005903 7.5e-35 151.0 163 55.2
Gohir.A08G085100 Gossypium hirsutum HOM05D005006 ORTHO05D005903 7.5e-35 151.0 150 60.7
FAN04G1712 Fragaria x ananassa HOM05D005006 ORTHO05D005903 9.7e-35 150.6 152 56.6
FAN04G3134 Fragaria x ananassa HOM05D005006 ORTHO05D005903 9.7e-35 150.6 152 56.6
Atru.chr9.2028 Acer truncatum HOM05D005006 ORTHO05D005903 1.3e-34 150.2 154 54.5
Atru.chr9.2036 Acer truncatum HOM05D005006 ORTHO05D005903 1.3e-34 150.2 154 54.5
Duzib084G0720 Durio zibethinus HOM05D005006 ORTHO05D005903 2.2e-34 149.4 153 58.8
SGA_v2.0_scaffold111G31421 Striga asiatica HOM05D005006 ORTHO05D005903 2.2e-34 149.4 139 58.3
ClCG01G001990 Citrullus lanatus HOM05D005006 ORTHO05D005903 2.8e-34 149.1 155 56.1
TWI15G0537 Tripterygium wilfordii HOM05D005006 ORTHO05D005903 4.8e-34 148.3 149 59.1
Thecc.03G294000 Theobroma cacao HOM05D005006 ORTHO05D005903 8.2e-34 147.5 153 59.5
Gohir.D08G132000 Gossypium hirsutum HOM05D005006 ORTHO05D005903 1.4e-33 146.7 150 60.0
Gorai.004G134900 Gossypium raimondii HOM05D005006 ORTHO05D005903 1.4e-33 146.7 150 60.0
MD06G1103200 Malus domestica HOM05D005006 ORTHO05D005903 2.4e-33 146.0 168 54.8
Glyma.11G018400 Glycine max HOM05D005006 ORTHO05D005903 3.1e-33 145.6 157 56.7
MD14G1122100 Malus domestica HOM05D005006 ORTHO05D005903 7.0e-33 144.4 168 56.0
Glyma.01G224600 Glycine max HOM05D005006 ORTHO05D005903 9.1e-33 144.1 158 53.8
THA.LOC104809339 Tarenaya hassleriana HOM05D005006 ORTHO05D005903 9.1e-33 144.1 181 51.4
Prupe.5G116000 Prunus persica HOM05D005006 ORTHO05D005903 1.2e-32 143.7 165 53.3
BraA07t29781Z Brassica rapa HOM05D005006 ORTHO05D005903 3.5e-32 142.1 171 53.2
MELO3C016304.2 Cucumis melo HOM05D005006 ORTHO05D005903 3.5e-32 142.1 155 58.1
Duzib068G0822 Durio zibethinus HOM05D005006 ORTHO05D005903 4.5e-32 141.7 152 58.6
C06p20240 Brassica napus HOM05D005006 ORTHO05D005903 5.9e-32 141.4 169 53.8
BolC6t37205H Brassica oleracea HOM05D005006 ORTHO05D005903 5.9e-32 141.4 169 53.8
CSS0014692 Camellia sinensis var. sinensis HOM05D005006 ORTHO05D005903 7.7e-32 141.0 154 55.2
Lsat_1_v5_gn_6_11781 Lactuca sativa HOM05D005006 ORTHO05D005903 1.0e-31 140.6 146 54.8
Atru.chr2.764 Acer truncatum HOM05D005006 ORTHO05D005903 1.7e-31 139.8 152 53.3
HanXRQChr07g0191041 Helianthus annuus HOM05D005006 ORTHO05D005903 1.7e-31 139.8 151 54.3
BcaC08g44558 Brassica carinata HOM05D005006 ORTHO05D005903 2.2e-31 139.4 169 53.8
Carub.0007s3356 Capsella rubella HOM05D005006 ORTHO05D005903 2.2e-31 139.4 171 50.3
A07p20950 Brassica napus HOM05D005006 ORTHO05D005903 2.9e-31 139.0 171 52.6
Sc22g0005120 Simmondsia chinensis HOM05D005006 ORTHO05D005903 2.9e-31 139.0 149 57.7
Rhsim07G0083400 Rhododendron simsii HOM05D005006 ORTHO05D005903 5.0e-31 138.3 155 54.8
TWI81G0332 Tripterygium wilfordii HOM05D005006 ORTHO05D005903 5.0e-31 138.3 148 58.8
MELO3C005742.2 Cucumis melo HOM05D005006 ORTHO05D005903 6.5e-31 137.9 156 53.8
Lj4g0012980 Lotus japonicus HOM05D005006 ORTHO05D005903 6.5e-31 137.9 170 52.9
Sp7g00270 Schrenkiella parvula HOM05D005006 ORTHO05D005903 1.5e-30 136.7 161 52.2
CARHR212760 Cardamine hirsuta HOM05D005006 ORTHO05D005903 1.9e-30 136.3 166 50.6
Psat0s4474g0040 Pisum sativum HOM05D005006 ORTHO05D005903 3.2e-30 135.6 148 49.3
AT5G41810 Arabidopsis thaliana HOM05D005006 ORTHO05D005903 5.5e-30 134.8 171 49.7
AL7G47430 Arabidopsis lyrata HOM05D005006 ORTHO05D005903 1.2e-29 133.7 169 49.7
ClCG07G014930 Citrullus lanatus HOM05D005006 ORTHO05D005903 1.2e-29 133.7 153 54.2
ClCG10G009270 Citrullus lanatus HOM05D005006 ORTHO05D005903 1.2e-29 133.7 153 54.2
BcaB02g07876 Brassica carinata HOM05D005006 ORTHO05D005903 1.6e-29 133.3 171 50.9
Lsat_1_v5_gn_6_85661 Lactuca sativa HOM05D005006 ORTHO05D005903 2.7e-29 132.5 147 54.4
LjContig00312_ERROPOS870357g0014674 Lotus japonicus HOM05D005006 ORTHO05D005903 8.0e-29 131.0 160 51.9
Sed0017945 Sechium edule HOM05D005006 ORTHO05D005903 1.0e-28 130.6 150 52.7
MBI07_g24340_MAGBIO Magnolia biondii HOM05D005006 ORTHO05D005903 2.3e-28 129.4 150 55.3
CSS0022093 Camellia sinensis var. sinensis HOM05D005006 ORTHO05D005903 3.0e-28 129.0 152 53.3
MSTRG.13880 Avicennia marina HOM05D005006 ORTHO05D005903 4.0e-28 128.6 155 51.0
CsaV3_4G006460 Cucumis sativus L. HOM05D005006 ORTHO05D005903 4.0e-28 128.6 154 52.6
CsaV3_5G002120 Cucumis sativus L. HOM05D005006 ORTHO05D005903 4.0e-28 128.6 158 50.6
Sed0013874 Sechium edule HOM05D005006 ORTHO05D005903 6.8e-28 127.9 152 51.3
Medtr5g009490 Medicago truncatula HOM05D005006 ORTHO05D005903 1.5e-27 126.7 167 46.7
Cpa.g.sc775.1 Carica papaya HOM05D005006 ORTHO05D005903 2.6e-27 125.9 149 53.7
A09p14260 Brassica napus HOM05D005006 ORTHO05D005903 4.4e-27 125.2 148 52.7
BraA09t37075Z Brassica rapa HOM05D005006 ORTHO05D005903 1.3e-26 123.6 146 52.1
C09p17190 Brassica napus HOM05D005006 ORTHO05D005903 1.7e-26 123.2 147 51.7
BolC9t54617H Brassica oleracea HOM05D005006 ORTHO05D005903 1.7e-26 123.2 147 51.7
ECA240G3705 Erigeron canadensis HOM05D005006 ORTHO05D005903 1.7e-26 123.2 161 49.1
Thhalv10023644m.g Eutrema salsugineum HOM05D005006 ORTHO05D005903 1.7e-26 123.2 148 51.4
Peaxi162Scf00117g00128 Petunia axillaris HOM05D005006 ORTHO05D005903 1.7e-26 123.2 140 55.7
BcaC04g22629 Brassica carinata HOM05D005006 ORTHO05D005903 2.8e-26 122.5 148 51.4
ECA233G6185 Erigeron canadensis HOM05D005006 ORTHO05D005903 2.8e-26 122.5 167 47.3
Aqoxy5G04131 Aquilegia oxysepala HOM05D005006 ORTHO05D005903 8.3e-26 120.9 159 51.6
Glyma.05G215700 Glycine max HOM05D005006 ORTHO05D005903 8.3e-26 120.9 165 49.1
Carub.0002s0046 Capsella rubella HOM05D005006 ORTHO05D005903 1.4e-25 120.2 154 51.3
VMungo0251G1458 Vigna mungo HOM05D005006 ORTHO05D005903 1.4e-25 120.2 178 47.2
AL2G10550 Arabidopsis lyrata HOM05D005006 ORTHO05D005903 1.8e-25 119.8 155 50.3
Rhsim02G0241500 Rhododendron simsii HOM05D005006 ORTHO05D005903 1.8e-25 119.8 158 52.5
Sp2g00420 Schrenkiella parvula HOM05D005006 ORTHO05D005903 2.4e-25 119.4 148 51.4
AUR62010816 Chenopodium quinoa HOM05D005006 ORTHO05D005903 3.1e-25 119.0 170 48.2
Phvul.002G296900 Phaseolus vulgaris HOM05D005006 ORTHO05D005903 3.1e-25 119.0 172 48.3
HanXRQChr03g0085171 Helianthus annuus HOM05D005006 ORTHO05D005903 4.1e-25 118.6 145 50.3
TPR.G6668 Trifolium pratense HOM05D005006 ORTHO05D005903 4.1e-25 118.6 157 47.1
Nn1g01823 Nelumbo nucifera HOM05D005006 ORTHO05D005903 7.0e-25 117.9 158 48.1
BcaB07g31512 Brassica carinata HOM05D005006 ORTHO05D005903 9.1e-25 117.5 136 52.2
Glyma.08G021800 Glycine max HOM05D005006 ORTHO05D005903 4.5e-24 115.2 166 47.0
VMungo1215G3249 Vigna mungo HOM05D005266 ORTHO05D006416 1.0e-23 114.0 154 46.8
Aa31LG9G320 Aethionema arabicum HOM05D005006 ORTHO05D005903 1.7e-23 113.2 158 50.0
Medtr8g099340 Medicago truncatula HOM05D005006 ORTHO05D005903 2.2e-23 112.8 172 45.9
AT1G64340 Arabidopsis thaliana HOM05D005006 ORTHO05D005903 5.0e-23 111.7 146 48.6
Psat7g027080 Pisum sativum HOM05D005006 ORTHO05D005903 1.1e-22 110.5 158 46.2
Lalb_Chr05g0224201 Lupinus albus HOM05D005006 ORTHO05D005903 1.9e-22 109.8 162 48.8
Manes.02G012001 Manihot esculenta HOM05D005006 ORTHO05D005903 4.2e-22 108.6 147 47.6
PGR042G1559 Punica granatum HOM05D005006 ORTHO05D005903 1.6e-21 106.7 147 46.9
Dinv38852 Davidia involucrata HOM05D005006 ORTHO05D005903 8.8e-20 100.9 96 61.5
MBI06_g32753_MAGBIO Magnolia biondii HOM05D005006 ORTHO05D005903 1.2e-19 100.5 150 45.3
Ca_17490_v3 Cicer arietinum L. HOM05D005006 ORTHO05D005903 1.5e-19 100.1 165 42.4
ClCG11G005390 Citrullus lanatus HOM05D000189 ORTHO05D006628 2.6e-19 99.4 134 50.7
ClCG01G011510 Citrullus lanatus HOM05D005006 ORTHO05D005903 1.8e-17 93.2 94 57.4
ClCG05G010200 Citrullus lanatus HOM05D005006 ORTHO05D005903 1.8e-17 93.2 94 57.4
ClCG07G009600 Citrullus lanatus HOM05D005006 ORTHO05D005903 1.8e-17 93.2 94 57.4
Sc01g0010170 Simmondsia chinensis HOM05D005006 ORTHO05D005903 5.4e-17 91.7 144 45.8
ATR0589G111 Amborella trichopoda HOM05D005006 ORTHO05D005903 6.6e-15 84.7 166 39.2
Gohir.A12G235100 Gossypium hirsutum HOM05D005006 ORTHO05D005903 8.6e-15 84.3 125 53.6
CSS0044305 Camellia sinensis var. sinensis HOM05D005006 ORTHO05D005903 2.5e-14 82.8 144 41.7
SalBow1G2562 Salvia bowleyana HOM05D005006 ORTHO05D005903 4.3e-14 82.0 111 45.0
SalBow1G1740 Salvia bowleyana HOM05D005006 ORTHO05D005903 5.6e-14 81.6 111 45.0
Phvul.002G163200 Phaseolus vulgaris HOM05D005006 ORTHO05D005903 7.3e-14 81.3 94 46.8
Gohir.D12G236200 Gossypium hirsutum HOM05D005006 ORTHO05D005903 2.1e-13 79.7 121 51.2
Gorai.008G253000 Gossypium raimondii HOM05D005006 ORTHO05D005903 2.1e-13 79.7 121 51.2
TAR636G0983 Trochodendron aralioides HOM05D000337 ORTHO05D000297 2.1e-13 79.7 61 65.6
Rhsim02G0241700 Rhododendron simsii HOM05D000089 ORTHO05D003403 1.4e-12 77.0 193 36.8
Gohir.A02G102000 Gossypium hirsutum HOM05D005006 ORTHO05D005903 3.0e-12 75.9 108 51.9
Gohir.D03G082400 Gossypium hirsutum HOM05D005006 ORTHO05D005903 3.0e-12 75.9 108 51.9
Gorai.003G081300 Gossypium raimondii HOM05D005006 ORTHO05D005903 3.0e-12 75.9 108 51.9
Zm00001eb382950 Zea mays HOM05D005006 ORTHO05D005903 9.8e-11 70.9 148 39.9
PSO724G0350 Papaver somniferum HOM05D005006 ORTHO05D005903 2.2e-10 69.7 116 45.7
CSS0044713 Camellia sinensis var. sinensis HOM05D005006 ORTHO05D005903 6.4e-10 68.2 138 40.6
CSS0015607 Camellia sinensis var. sinensis HOM05D005006 ORTHO05D005903 1.1e-09 67.4 147 38.1
Gohir.A11G024100 Gossypium hirsutum HOM05D005006 ORTHO05D005903 1.8e-09 66.6 78 48.7
TPR.G3451 Trifolium pratense HOM05D006501 ORTHO05D008241 2.4e-09 66.2 83 48.2
SGA_v2.0_scaffold173G39083 Striga asiatica HOM05D005006 ORTHO05D005903 7.0e-09 64.7 108 41.7
PSO724G0798 Papaver somniferum HOM05D005006 ORTHO05D005903 1.2e-08 63.9 84 50.0
PSO724G1125 Papaver somniferum HOM05D005006 ORTHO05D005903 1.2e-08 63.9 84 50.0
Nn3g19068 Nelumbo nucifera HOM05D005006 ORTHO05D005903 2.0e-08 63.2 87 44.8
PSO729G0067 Papaver somniferum HOM05D005006 ORTHO05D005903 2.0e-08 63.2 117 43.6
Ah.12g052340 Amaranthus hybridus HOM05D005006 ORTHO05D005903 7.8e-08 61.2 121 39.7
Os06g0525200 Oryza sativa ssp. japonica HOM05D005006 ORTHO05D005903 1.3e-07 60.5 44 65.9
EL10Ac5g12894 Beta vulgaris HOM05D005006 ORTHO05D005903 6.6e-07 58.2 113 39.8
AUR62019816 Chenopodium quinoa HOM05D005006 ORTHO05D005903 7.3e-06 54.7 48 56.2


User provided reference genes

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