Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen08g030130 Solanum pennellii HOM05D001597 ORTHO05D001512 3.5e-37 157.9 86 100.0
PGSC0003DMG400012312 Solanum tuberosum HOM05D001597 ORTHO05D001512 6.3e-23 110.5 63 90.5
Nitab4.5_0002788g0100 Nicotiana tabacum HOM05D001597 ORTHO05D001512 5.0e-12 74.3 54 66.7
Peaxi162Scf00117g00144 Petunia axillaris HOM05D001597 ORTHO05D001512 1.1e-11 73.2 54 64.8
CiPaw.12G086500 Carya illinoinensis HOM05D001597 ORTHO05D001512 1.5e-11 72.8 66 53.0
PGR031G2023 Punica granatum HOM05D001597 ORTHO05D001512 1.9e-11 72.4 54 61.1
CAN.G532.60 Capsicum annuum HOM05D001597 ORTHO05D001512 2.5e-11 72.0 64 57.8
AUR62019786 Chenopodium quinoa HOM05D001597 ORTHO05D001512 2.5e-11 72.0 69 46.4
Cc08_g15590 Coffea canephora HOM05D001597 ORTHO05D001512 3.3e-11 71.6 78 47.4
Hund14246 Selenicereus undatus HOM05D001597 ORTHO05D001512 3.3e-11 71.6 48 66.7
EL10Ac5g12863 Beta vulgaris HOM05D001597 ORTHO05D001512 5.5e-11 70.9 50 58.0
Duzib068G0506 Durio zibethinus HOM05D001597 ORTHO05D001512 5.5e-11 70.9 93 40.9
AUR62010791 Chenopodium quinoa HOM05D001597 ORTHO05D001512 7.2e-11 70.5 50 58.0
Dinv38879 Davidia involucrata HOM05D001597 ORTHO05D001512 1.2e-10 69.7 90 43.3
COL.COLO4_21745 Corchorus olitorius HOM05D001597 ORTHO05D001512 2.8e-10 68.6 79 48.1
Duzib205G0027 Durio zibethinus HOM05D001597 ORTHO05D001512 8.0e-10 67.0 88 42.0
Nitab4.5_0000223g0020 Nicotiana tabacum HOM05D001597 ORTHO05D001512 8.0e-10 67.0 52 67.3
Hund11422 Selenicereus undatus HOM05D001597 ORTHO05D001512 8.0e-10 67.0 50 62.0
Hma1.2p1_0216F.1_g091370 Hydrangea macrophylla HOM05D001597 ORTHO05D001512 1.0e-09 66.6 63 50.8
Nitab4.5_0002564g0060 Nicotiana tabacum HOM05D001597 ORTHO05D001512 1.4e-09 66.2 52 63.5
QL02p031955 Quercus lobata HOM05D001597 ORTHO05D001512 1.8e-09 65.9 51 58.8
Ciclev10019554m.g Citrus clementina HOM05D001597 ORTHO05D001512 2.3e-09 65.5 46 63.0
GSVIVG01019465001 Vitis vinifera HOM05D001597 ORTHO05D001512 2.3e-09 65.5 76 46.1
Gohir.A12G231800 Gossypium hirsutum HOM05D001597 ORTHO05D001512 4.0e-09 64.7 45 64.4
Gorai.008G251700 Gossypium raimondii HOM05D001597 ORTHO05D001512 4.0e-09 64.7 45 64.4
Nitab4.5_0002381g0030 Nicotiana tabacum HOM05D001597 ORTHO05D001512 4.0e-09 64.7 80 46.2
CAN.G868.12 Capsicum annuum HOM05D001597 ORTHO05D001512 5.2e-09 64.3 54 59.3
Cfa012283 Carpinus fangiana HOM05D001597 ORTHO05D001512 6.8e-09 63.9 55 56.4
Gohir.D12G235425 Gossypium hirsutum HOM05D001597 ORTHO05D001512 6.8e-09 63.9 45 64.4
Manes.02G013900 Manihot esculenta HOM05D001597 ORTHO05D001512 6.8e-09 63.9 58 51.7
Actinidia04221 Actinidia chinensis HOM05D001597 ORTHO05D001512 1.2e-08 63.2 91 40.7
ATR1131G063 Amborella trichopoda HOM05D001597 ORTHO05D001512 1.5e-08 62.8 58 51.7
Gohir.A11G023600 Gossypium hirsutum HOM05D001597 ORTHO05D001512 1.5e-08 62.8 56 51.8
Potri.003G135300 Populus trichocarpa HOM05D001597 ORTHO05D001512 1.5e-08 62.8 45 64.4
TWI59G1117 Tripterygium wilfordii HOM05D001597 ORTHO05D001512 1.5e-08 62.8 63 47.6
Haze_08701 Corylus avellana HOM05D001597 ORTHO05D001512 2.6e-08 62.0 52 55.8
Eucgr.D01781 Eucalyptus grandis HOM05D001597 ORTHO05D001512 2.6e-08 62.0 67 46.3
Gohir.D11G023300 Gossypium hirsutum HOM05D001597 ORTHO05D001512 2.6e-08 62.0 56 51.8
Gorai.007G025100 Gossypium raimondii HOM05D001597 ORTHO05D001512 2.6e-08 62.0 56 51.8
Sabra03G0097500 Salix brachista HOM05D001597 ORTHO05D001512 3.4e-08 61.6 45 62.2
TWI14G1198 Tripterygium wilfordii HOM05D001597 ORTHO05D001512 4.4e-08 61.2 49 55.1
MSTRG.1828 Avicennia marina HOM05D001597 ORTHO05D001512 5.7e-08 60.8 52 61.5
Lj1g0002843 Lotus japonicus HOM05D001597 ORTHO05D001512 7.5e-08 60.5 58 48.3
Nn7g37361 Nelumbo nucifera HOM05D001597 ORTHO05D001512 7.5e-08 60.5 52 53.8
vmacro20870 Vaccinium macrocarpon HOM05D001597 ORTHO05D001512 7.5e-08 60.5 52 51.9
Actinidia28490 Actinidia chinensis HOM05D001597 ORTHO05D001512 9.8e-08 60.1 53 52.8
Dinv32543 Davidia involucrata HOM05D001597 ORTHO05D001512 9.8e-08 60.1 66 43.9
Sabra01G0071900 Salix brachista HOM05D001597 ORTHO05D001512 9.8e-08 60.1 45 60.0
CSS0008739 Camellia sinensis var. sinensis HOM05D001597 ORTHO05D001512 1.3e-07 59.7 49 57.1
CiPaw.02G037700 Carya illinoinensis HOM05D001597 ORTHO05D001512 1.3e-07 59.7 87 40.2
TAR629G3319 Trochodendron aralioides HOM05D001597 ORTHO05D001512 1.3e-07 59.7 58 50.0
Lalb_Chr17g0342201 Lupinus albus HOM05D001597 ORTHO05D001512 1.7e-07 59.3 51 54.9
TWI23G0118 Tripterygium wilfordii HOM05D001597 ORTHO05D001512 1.7e-07 59.3 60 48.3
Ciclev10019570m.g Citrus clementina HOM05D001597 ORTHO05D001512 2.2e-07 58.9 61 47.5
Lj8C213G0 Lonicera japonica HOM05D001597 ORTHO05D001512 2.2e-07 58.9 63 44.4
unitig_749.g13403 Utricularia gibba HOM05D001597 ORTHO05D001512 2.2e-07 58.9 62 50.0
MD06G1098500 Malus domestica HOM05D001597 ORTHO05D001512 2.8e-07 58.5 45 64.4
Nn1g01770 Nelumbo nucifera HOM05D001597 ORTHO05D001512 2.8e-07 58.5 75 44.0
Rhsim01G0169000 Rhododendron simsii HOM05D001597 ORTHO05D001512 2.8e-07 58.5 52 53.8
Thecc.01G349000 Theobroma cacao HOM05D001597 ORTHO05D001512 2.8e-07 58.5 78 39.7
CSS0034741 Camellia sinensis var. sinensis HOM05D001597 ORTHO05D001512 3.7e-07 58.2 49 57.1
Migut.E01225 Erythranthe guttata HOM05D001597 ORTHO05D001512 3.7e-07 58.2 47 59.6
Potri.001G096100 Populus trichocarpa HOM05D001597 ORTHO05D001512 3.7e-07 58.2 45 60.0
Aqoxy7G00182 Aquilegia oxysepala HOM05D001597 ORTHO05D001512 4.9e-07 57.8 52 53.8
Cpa.g.sc184.4 Carica papaya HOM05D001597 ORTHO05D001512 4.9e-07 57.8 78 37.2
Phvul.010G108100 Phaseolus vulgaris HOM05D001597 ORTHO05D001512 4.9e-07 57.8 51 51.0
VMungo0331G0271 Vigna mungo HOM05D001597 ORTHO05D001512 4.9e-07 57.8 51 51.0
Aa31LG1G27650 Aethionema arabicum HOM05D001597 ORTHO05D001512 6.3e-07 57.4 61 47.5
Duzib138G1084 Durio zibethinus HOM05D001597 ORTHO05D001512 6.3e-07 57.4 67 41.8
MD01G1074300 Malus domestica HOM05D001597 ORTHO05D001512 6.3e-07 57.4 62 41.9
Oeu063666.1 Olea europaea HOM05D001597 ORTHO05D001512 6.3e-07 57.4 46 54.3
Sed0005870 Sechium edule HOM05D001597 ORTHO05D001512 6.3e-07 57.4 72 41.7
MELO3C021170.2 Cucumis melo HOM05D001597 ORTHO05D001512 8.3e-07 57.0 50 56.0
Glyma.19G252500 Glycine max HOM05D001597 ORTHO05D001512 8.3e-07 57.0 52 50.0
TPR.G21286 Trifolium pratense HOM05D001597 ORTHO05D001512 8.3e-07 57.0 51 52.9
unitig_26.g9699 Utricularia gibba HOM05D001597 ORTHO05D001512 8.3e-07 57.0 48 54.2
CARHR171910 Cardamine hirsuta HOM05D001597 ORTHO05D001512 1.1e-06 56.6 53 50.9
Cfa003846 Carpinus fangiana HOM05D001597 ORTHO05D001512 1.1e-06 56.6 63 42.9
Gohir.A11G093600 Gossypium hirsutum HOM05D001597 ORTHO05D001512 1.1e-06 56.6 67 40.3
Gohir.D11G098600 Gossypium hirsutum HOM05D001597 ORTHO05D001512 1.1e-06 56.6 67 40.3
Gorai.007G104800 Gossypium raimondii HOM05D001597 ORTHO05D001512 1.1e-06 56.6 67 40.3
Lj9C593G12 Lonicera japonica HOM05D001597 ORTHO05D001512 1.1e-06 56.6 62 43.5
Potri.014G093700 Populus trichocarpa HOM05D001597 ORTHO05D001512 1.1e-06 56.6 61 45.9
Sabra14G0068400 Salix brachista HOM05D001597 ORTHO05D001512 1.1e-06 56.6 51 51.0
CsaV3_6G000990 Cucumis sativus L. HOM05D001597 ORTHO05D001512 1.4e-06 56.2 50 56.0
Migut.B01820 Erythranthe guttata HOM05D001597 ORTHO05D001512 1.4e-06 56.2 48 56.2
FAN03G3199 Fragaria x ananassa HOM05D001597 ORTHO05D001512 1.4e-06 56.2 46 54.3
Hma1.2p1_0384F.1_g140903 Hydrangea macrophylla HOM05D001597 ORTHO05D001512 1.4e-06 56.2 66 42.4
Hma1.2p1_0384F.1_g140909 Hydrangea macrophylla HOM05D001597 ORTHO05D001512 1.4e-06 56.2 66 42.4
MD14G1117700 Malus domestica HOM05D001597 ORTHO05D001512 1.4e-06 56.2 52 59.6
Sabra02G0144900 Salix brachista HOM05D001597 ORTHO05D001512 1.4e-06 56.2 51 51.0
SGA_v2.0_scaffold111G31451 Striga asiatica HOM05D001597 ORTHO05D001512 1.4e-06 56.2 45 57.8
Actinidia01409 Actinidia chinensis HOM05D001597 ORTHO05D001512 1.8e-06 55.8 51 54.9
AT3G61600 Arabidopsis thaliana HOM05D001597 ORTHO05D001512 1.8e-06 55.8 52 50.0
BcaC08g45141 Brassica carinata HOM05D001597 ORTHO05D001512 1.8e-06 55.8 61 44.3
A07p25610 Brassica napus HOM05D001597 ORTHO05D001512 1.8e-06 55.8 61 44.3
C06p27600 Brassica napus HOM05D001597 ORTHO05D001512 1.8e-06 55.8 61 44.3
BolC6t37929H Brassica oleracea HOM05D001597 ORTHO05D001512 1.8e-06 55.8 61 44.3
BraA07t30202Z Brassica rapa HOM05D001597 ORTHO05D001512 1.8e-06 55.8 61 44.3
Glyma.03G254800 Glycine max HOM05D001597 ORTHO05D001512 1.8e-06 55.8 52 48.1
HanXRQChr06g0170511 Helianthus annuus HOM05D001597 ORTHO05D001512 1.8e-06 55.8 50 52.0
Oeu007831.1 Olea europaea HOM05D001597 ORTHO05D001512 1.8e-06 55.8 46 52.2
Prupe.5G112100 Prunus persica HOM05D001597 ORTHO05D001512 1.8e-06 55.8 58 51.7
Thecc.03G290800 Theobroma cacao HOM05D001597 ORTHO05D001512 1.8e-06 55.8 41 63.4
VMungo0331G0273 Vigna mungo HOM05D001597 ORTHO05D001512 1.8e-06 55.8 51 51.0
VMungo0540G0345 Vigna mungo HOM05D001597 ORTHO05D001512 1.8e-06 55.8 50 50.0
Actinidia02811 Actinidia chinensis HOM05D001597 ORTHO05D001512 2.4e-06 55.5 53 49.1
AT2G46260 Arabidopsis thaliana HOM05D001597 ORTHO05D001512 2.4e-06 55.5 61 44.3
DCAR_006958 Daucus carota HOM05D001597 ORTHO05D001512 2.4e-06 55.5 45 53.3
HanXRQChr04g0120601 Helianthus annuus HOM05D001597 ORTHO05D001512 2.4e-06 55.5 45 53.3
Lsat_1_v5_gn_7_1480 Lactuca sativa HOM05D001597 ORTHO05D001512 2.4e-06 55.5 45 53.3
Medtr8g028190 Medicago truncatula HOM05D001597 ORTHO05D001512 2.4e-06 55.5 53 49.1
Rhsim07G0008200 Rhododendron simsii HOM05D001597 ORTHO05D001512 2.4e-06 55.5 51 51.0
AL4G45540 Arabidopsis lyrata HOM05D001597 ORTHO05D001512 3.1e-06 55.1 61 44.3
arahy.Tifrunner.gnm1.ann1.IT0YUR Arachis hypogaea HOM05D001597 ORTHO05D001512 3.1e-06 55.1 50 46.0
arahy.Tifrunner.gnm1.ann1.NHF99U Arachis hypogaea HOM05D001597 ORTHO05D001512 3.1e-06 55.1 50 46.0
BcaB02g07367 Brassica carinata HOM05D001597 ORTHO05D001512 3.1e-06 55.1 61 44.3
BcaC07g40665 Brassica carinata HOM05D001597 ORTHO05D001512 3.1e-06 55.1 71 42.3
Ca_23559_v3 Cicer arietinum L. HOM05D001597 ORTHO05D001512 3.1e-06 55.1 53 49.1
ClCG06G003290 Citrullus lanatus HOM05D001597 ORTHO05D001512 3.1e-06 55.1 54 51.9
MELO3C006051.2 Cucumis melo HOM05D001597 ORTHO05D001512 3.1e-06 55.1 50 46.0
CsaV3_3G008330 Cucumis sativus L. HOM05D001597 ORTHO05D001512 3.1e-06 55.1 50 46.0
ECA236G2564 Erigeron canadensis HOM05D001597 ORTHO05D001512 3.1e-06 55.1 57 47.4
Thhalv10005840m.g Eutrema salsugineum HOM05D001597 ORTHO05D001512 3.1e-06 55.1 66 39.4
Manes.05G027100 Manihot esculenta HOM05D001597 ORTHO05D001512 3.1e-06 55.1 50 50.0
Atru.chr5.607 Acer truncatum HOM05D001597 ORTHO05D001512 4.1e-06 54.7 67 40.3
Actinidia20186 Actinidia chinensis HOM05D001597 ORTHO05D001512 4.1e-06 54.7 67 38.8
AL5G43990 Arabidopsis lyrata HOM05D001597 ORTHO05D001512 4.1e-06 54.7 52 48.1
Carub.0005s2829 Capsella rubella HOM05D001597 ORTHO05D001512 4.1e-06 54.7 52 48.1
CARHR141530 Cardamine hirsuta HOM05D001597 ORTHO05D001512 4.1e-06 54.7 53 47.2
Haze_15604 Corylus avellana HOM05D001597 ORTHO05D001512 4.1e-06 54.7 46 54.3
Potri.002G166700 Populus trichocarpa HOM05D001597 ORTHO05D001512 4.1e-06 54.7 50 50.0
Sp5g01810 Schrenkiella parvula HOM05D001597 ORTHO05D001512 4.1e-06 54.7 52 48.1
Sed0024631 Sechium edule HOM05D001597 ORTHO05D001512 4.1e-06 54.7 50 46.0
BcaB01g03233 Brassica carinata HOM05D001597 ORTHO05D001512 5.4e-06 54.3 52 51.9
Carub.0004s2897 Capsella rubella HOM05D001597 ORTHO05D001512 5.4e-06 54.3 52 48.1
Gohir.A12G110300 Gossypium hirsutum HOM05D001597 ORTHO05D001512 5.4e-06 54.3 72 43.1
Gohir.D12G113300 Gossypium hirsutum HOM05D001597 ORTHO05D001512 5.4e-06 54.3 72 43.1
Gorai.008G122900 Gossypium raimondii HOM05D001597 ORTHO05D001512 5.4e-06 54.3 72 43.1
Manes.01G250200 Manihot esculenta HOM05D001597 ORTHO05D001512 5.4e-06 54.3 50 48.0
RcHm_v2.0_Chr1g0358521 Rosa chinensis HOM05D001597 ORTHO05D001512 5.4e-06 54.3 46 52.2
SalBow7G3850 Salvia bowleyana HOM05D001597 ORTHO05D001512 5.4e-06 54.3 47 53.2
SHI13129 Sapria himalayana HOM05D001597 ORTHO05D001512 5.4e-06 54.3 50 52.0
Sc23g0002400 Simmondsia chinensis HOM05D001597 ORTHO05D001512 5.4e-06 54.3 75 42.7
vmacro13207 Vaccinium macrocarpon HOM05D001597 ORTHO05D001512 5.4e-06 54.3 51 47.1
Aa31LG10G15400 Aethionema arabicum HOM05D001597 ORTHO05D001512 7.0e-06 53.9 62 46.8
Duzib133G0916 Durio zibethinus HOM05D001597 ORTHO05D001512 7.0e-06 53.9 67 40.3
ECA234G1805 Erigeron canadensis HOM05D001597 ORTHO05D001512 7.0e-06 53.9 44 54.5
FvH4_7g15752 Fragaria vesca HOM05D001597 ORTHO05D001512 7.0e-06 53.9 46 52.2
FAN06G4080 Fragaria x ananassa HOM05D001597 ORTHO05D001512 7.0e-06 53.9 46 52.2
FAN06G5084 Fragaria x ananassa HOM05D001597 ORTHO05D001512 7.0e-06 53.9 46 52.2
FAN10G2054 Fragaria x ananassa HOM05D001597 ORTHO05D001512 7.0e-06 53.9 46 52.2
Lj3g0026639 Lotus japonicus HOM05D001597 ORTHO05D001512 7.0e-06 53.9 56 44.6
SEGI_24077 Sequoiadendron giganteum HOM05D001597 ORTHO05D001512 7.0e-06 53.9 58 48.3
SGA_v2.0_scaffold4G02264 Striga asiatica HOM05D001597 ORTHO05D001512 7.0e-06 53.9 48 52.1
Dinv37562 Davidia involucrata HOM05D001597 ORTHO05D001512 9.2e-06 53.5 48 52.1
Phvul.010G108200 Phaseolus vulgaris HOM05D001597 ORTHO05D001512 9.2e-06 53.5 51 49.0


User provided reference genes

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