Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen08g029940 Solanum pennellii HOM05D006693 ORTHO05D008092 0.0e+00 3003.0 1507 100.0
Solyc08g081640.3 Solanum lycopersicum HOM05D006693 ORTHO05D008092 0.0e+00 2830.4 1507 95.6
PGSC0003DMG400012182 Solanum tuberosum HOM05D006693 ORTHO05D008092 0.0e+00 2817.0 1513 94.2
Peaxi162Scf00074g01720 Petunia axillaris HOM05D006693 ORTHO05D008092 0.0e+00 2403.6 1517 80.7
Nitab4.5_0007163g0010 Nicotiana tabacum HOM05D006693 ORTHO05D008092 0.0e+00 1864.4 1111 84.8
Dinv38897 Davidia involucrata HOM05D006693 ORTHO05D008092 0.0e+00 1778.5 1548 60.5
Nitab4.5_0014092g0010 Nicotiana tabacum HOM05D006693 ORTHO05D008092 0.0e+00 1743.0 1084 82.5
Cc08_g15300 Coffea canephora HOM05D006693 ORTHO05D008092 0.0e+00 1648.6 1541 57.7
QL02p033351 Quercus lobata HOM05D006693 ORTHO05D008092 0.0e+00 1645.9 1540 57.3
Cfa012249 Carpinus fangiana HOM05D006693 ORTHO05D008092 0.0e+00 1645.6 1537 57.4
CSS0002391 Camellia sinensis var. sinensis HOM05D006693 ORTHO05D008092 0.0e+00 1623.2 1547 56.8
GSVIVG01019421001 Vitis vinifera HOM05D006693 ORTHO05D008092 0.0e+00 1618.2 1547 56.8
Migut.A00715 Erythranthe guttata HOM05D006693 ORTHO05D008092 0.0e+00 1611.3 1530 55.8
Rhsim07G0087200 Rhododendron simsii HOM05D006693 ORTHO05D008092 0.0e+00 1609.3 1568 55.5
CiPaw.12G089000 Carya illinoinensis HOM05D006693 ORTHO05D008092 0.0e+00 1595.9 1536 56.2
Thecc.03G286900 Theobroma cacao HOM05D006693 ORTHO05D008092 0.0e+00 1576.6 1535 55.5
MD06G1091700 Malus domestica HOM05D006693 ORTHO05D008092 0.0e+00 1575.8 1530 55.8
SGA_v2.0_scaffold173G39133 Striga asiatica HOM05D006693 ORTHO05D008092 0.0e+00 1573.5 1532 54.8
FvH4_5g03240 Fragaria vesca HOM05D006693 ORTHO05D008092 0.0e+00 1569.7 1530 55.4
Gorai.003G085400 Gossypium raimondii HOM05D006693 ORTHO05D008092 0.0e+00 1568.1 1534 55.5
Gohir.D03G078700 Gossypium hirsutum HOM05D006693 ORTHO05D008092 0.0e+00 1555.4 1535 55.3
Ciclev10018484m.g Citrus clementina HOM05D006693 ORTHO05D008092 0.0e+00 1555.0 1547 55.5
Lj2A178T45 Lonicera japonica HOM05D006693 ORTHO05D008092 0.0e+00 1555.0 1567 55.7
Duzib205G0177 Durio zibethinus HOM05D006693 ORTHO05D008092 0.0e+00 1552.0 1534 55.0
Atru.chr9.2109 Acer truncatum HOM05D006693 ORTHO05D008092 0.0e+00 1550.8 1534 55.0
Prupe.5G106900 Prunus persica HOM05D006693 ORTHO05D008092 0.0e+00 1550.4 1486 56.7
SalBow1G8229 Salvia bowleyana HOM05D006693 ORTHO05D008092 0.0e+00 1545.8 1565 54.1
Potri.001G098700 Populus trichocarpa HOM05D006693 ORTHO05D008092 0.0e+00 1541.2 1535 54.9
FAN04G0987 Fragaria x ananassa HOM05D006693 ORTHO05D008092 0.0e+00 1536.2 1555 54.2
MSTRG.11217 Avicennia marina HOM05D006693 ORTHO05D008092 0.0e+00 1534.2 1482 55.5
Potri.003G132900 Populus trichocarpa HOM05D006693 ORTHO05D008092 0.0e+00 1534.2 1557 54.1
Haze_08752 Corylus avellana HOM05D006693 ORTHO05D008092 0.0e+00 1532.7 1573 54.0
RcHm_v2.0_Chr7g0196531 Rosa chinensis HOM05D006693 ORTHO05D008092 0.0e+00 1525.8 1508 55.0
Nn6g32458 Nelumbo nucifera HOM05D006693 ORTHO05D008092 0.0e+00 1520.4 1538 54.6
Lsat_1_v5_gn_6_84960 Lactuca sativa HOM05D006693 ORTHO05D008092 0.0e+00 1516.5 1524 54.3
Manes.02G016800 Manihot esculenta HOM05D006693 ORTHO05D008092 0.0e+00 1515.0 1503 55.4
HanXRQChr03g0085981 Helianthus annuus HOM05D006693 ORTHO05D008092 0.0e+00 1512.3 1520 54.0
vmacro13975 Vaccinium macrocarpon HOM05D006693 ORTHO05D008092 0.0e+00 1508.0 1546 53.8
FAN18G3090 Fragaria x ananassa HOM05D006693 ORTHO05D008092 0.0e+00 1504.6 1634 51.4
Aqoxy5G04083 Aquilegia oxysepala HOM05D006693 ORTHO05D008092 0.0e+00 1501.9 1544 52.9
Oeu059571.2 Olea europaea HOM05D006693 ORTHO05D008092 0.0e+00 1501.9 1555 54.0
DCAR_008351 Daucus carota HOM05D006693 ORTHO05D008092 0.0e+00 1488.8 1500 54.5
MELO3C016336.2 Cucumis melo HOM05D006693 ORTHO05D008092 0.0e+00 1483.0 1544 52.8
FAN13G0718 Fragaria x ananassa HOM05D006693 ORTHO05D008092 0.0e+00 1478.0 1626 51.0
PSO063G3881 Papaver somniferum HOM05D006693 ORTHO05D008092 0.0e+00 1474.9 1537 52.7
Sabra03G0095200 Salix brachista HOM05D006693 ORTHO05D008092 0.0e+00 1472.2 1565 52.7
PSO170G0731 Papaver somniferum HOM05D006693 ORTHO05D008092 0.0e+00 1471.8 1536 52.5
FAN04G3090 Fragaria x ananassa HOM05D006693 ORTHO05D008092 0.0e+00 1466.1 1547 52.6
TAR629G1282 Trochodendron aralioides HOM05D006693 ORTHO05D008092 0.0e+00 1459.1 1423 55.7
Lj4g0019588 Lotus japonicus HOM05D006693 ORTHO05D008092 0.0e+00 1448.7 1537 51.7
Eucgr.D01808 Eucalyptus grandis HOM05D006693 ORTHO05D008092 0.0e+00 1443.3 1540 51.7
TPR.G12950 Trifolium pratense HOM05D006693 ORTHO05D008092 0.0e+00 1439.5 1540 51.4
ECA240G0689 Erigeron canadensis HOM05D006693 ORTHO05D008092 0.0e+00 1429.1 1520 51.8
Phvul.002G293300 Phaseolus vulgaris HOM05D006693 ORTHO05D008092 0.0e+00 1421.4 1540 51.2
Medtr8g098950 Medicago truncatula HOM05D006693 ORTHO05D008092 0.0e+00 1420.6 1530 51.2
Lalb_Chr16g0390281 Lupinus albus HOM05D006693 ORTHO05D008092 0.0e+00 1420.2 1524 52.2
arahy.Tifrunner.gnm1.ann1.ILCZ5C Arachis hypogaea HOM05D006693 ORTHO05D008092 0.0e+00 1417.5 1539 50.9
PGR031G3028 Punica granatum HOM05D006693 ORTHO05D008092 0.0e+00 1416.0 1543 50.8
Glyma.08G018400 Glycine max HOM05D006693 ORTHO05D008092 0.0e+00 1414.4 1533 51.5
VMungo0251G0136 Vigna mungo HOM05D006693 ORTHO05D008092 0.0e+00 1412.1 1543 51.1
Psat7g029760 Pisum sativum HOM05D006693 ORTHO05D008092 0.0e+00 1411.4 1550 50.5
MBI06_g33534_MAGBIO Magnolia biondii HOM05D006693 ORTHO05D008092 0.0e+00 1409.8 1584 51.1
Glyma.05G212000 Glycine max HOM05D006693 ORTHO05D008092 0.0e+00 1404.4 1537 51.1
arahy.Tifrunner.gnm1.ann1.U3KDBF Arachis hypogaea HOM05D006693 ORTHO05D008092 0.0e+00 1401.7 1544 50.7
THA.LOC104814738 Tarenaya hassleriana HOM05D006693 ORTHO05D008092 0.0e+00 1394.8 1526 50.5
Sp6g06170 Schrenkiella parvula HOM05D006693 ORTHO05D008092 0.0e+00 1392.9 1534 51.4
BcaB01g01624 Brassica carinata HOM05D006693 ORTHO05D008092 0.0e+00 1391.7 1523 51.9
Ca_10951_v3 Cicer arietinum L. HOM05D006693 ORTHO05D008092 0.0e+00 1384.4 1526 50.5
Hund14266 Selenicereus undatus HOM05D006693 ORTHO05D008092 0.0e+00 1378.6 1516 49.7
Thhalv10028363m.g Eutrema salsugineum HOM05D006693 ORTHO05D008092 0.0e+00 1377.1 1544 50.5
EL10Ac5g12841 Beta vulgaris HOM05D006693 ORTHO05D008092 0.0e+00 1374.8 1520 50.1
A09p27880 Brassica napus HOM05D006693 ORTHO05D008092 0.0e+00 1372.8 1526 50.8
BcaC04g21124 Brassica carinata HOM05D006693 ORTHO05D008092 0.0e+00 1370.1 1529 50.6
C09p35290 Brassica napus HOM05D006693 ORTHO05D008092 0.0e+00 1370.1 1529 50.6
AL6G45650 Arabidopsis lyrata HOM05D006693 ORTHO05D008092 0.0e+00 1369.8 1542 50.6
Sc07g0009850 Simmondsia chinensis HOM05D006693 ORTHO05D008092 0.0e+00 1368.6 1524 49.3
Lalb_Chr05g0224471 Lupinus albus HOM05D006693 ORTHO05D008092 0.0e+00 1365.9 1516 50.7
BraA09t38356Z Brassica rapa HOM05D006693 ORTHO05D008092 0.0e+00 1365.5 1545 50.2
BolC9t56372H Brassica oleracea HOM05D006693 ORTHO05D008092 0.0e+00 1362.8 1548 49.9
AUR62010757 Chenopodium quinoa HOM05D006693 ORTHO05D008092 0.0e+00 1349.7 1536 49.8
Carub.0006s3015 Capsella rubella HOM05D006693 ORTHO05D008092 0.0e+00 1345.9 1564 49.3
Aa31LG9G10920 Aethionema arabicum HOM05D006693 ORTHO05D008092 0.0e+00 1345.5 1596 49.4
AT4G11270 Arabidopsis thaliana HOM05D006693 ORTHO05D008092 0.0e+00 1345.5 1548 49.9
Gohir.A02G105100 Gossypium hirsutum HOM05D006693 ORTHO05D008092 0.0e+00 1336.2 1362 54.8
AUR62019758 Chenopodium quinoa HOM05D006693 ORTHO05D008092 0.0e+00 1316.2 1536 48.6
ATR0721G120 Amborella trichopoda HOM05D006693 ORTHO05D008092 0.0e+00 1310.0 1593 47.2
Sed0010800 Sechium edule HOM05D006693 ORTHO05D008092 0.0e+00 1308.9 1427 50.8
Ah.12g051930 Amaranthus hybridus HOM05D006693 ORTHO05D008092 0.0e+00 1276.2 1525 47.6
Actinidia27362 Actinidia chinensis HOM05D006693 ORTHO05D008092 0.0e+00 1271.9 1363 53.3
ClCG07G007830 Citrullus lanatus HOM05D006693 ORTHO05D008092 0.0e+00 1256.1 1391 51.2
CDE02G1190 Ceratophyllum demersum HOM05D006693 ORTHO05D008092 0.0e+00 1240.3 1535 47.8
CsaV3_4G006130 Cucumis sativus L. HOM05D006693 ORTHO05D008092 0.0e+00 1194.9 1326 50.7
HPP92_021742 Vanilla planifolia HOM05D006693 ORTHO05D008092 0.0e+00 1179.1 1573 44.1
AL6G45560 Arabidopsis lyrata HOM05D006693 ORTHO05D008092 0.0e+00 1140.2 1466 46.4
Zm00001eb382730 Zea mays HOM05D006693 ORTHO05D008092 1.0e-311 1074.7 1560 42.2
AagrBONN_evm.TU.Sc2ySwM_368.1009 Anthoceros agrestis HOM05D006693 ORTHO05D008092 1.9e-247 860.5 1629 34.6
COL.COLO4_08357 Corchorus olitorius HOM05D006693 ORTHO05D008092 6.1e-246 855.5 1006 47.7
CARHR255320 Cardamine hirsuta HOM05D006693 ORTHO05D008092 1.7e-187 661.4 927 42.9
COL.COLO4_08358 Corchorus olitorius HOM05D006693 ORTHO05D008092 4.7e-182 643.3 485 68.2
Actinidia33729 Actinidia chinensis HOM05D006693 ORTHO05D008092 8.1e-182 642.5 485 69.9
SMO358G0585 Selaginella moellendorffii HOM05D006693 ORTHO05D008092 1.5e-172 611.7 1521 30.6
SEGI_35152 Sequoiadendron giganteum HOM05D006693 ORTHO05D008092 1.3e-142 512.3 1039 35.2
Os06g0331300 Oryza sativa ssp. japonica HOM05D006693 ORTHO05D008092 1.7e-126 458.8 711 41.4
Cpa.g.sc180.1 Carica papaya HOM05D006693 ORTHO05D008092 2.8e-97 361.7 407 49.4
SEGI_07995 Sequoiadendron giganteum HOM05D006693 ORTHO05D008092 7.1e-69 267.3 591 32.5
FAN08G3186 Fragaria x ananassa HOM05D006693 ORTHO05D008092 7.8e-60 237.3 184 62.5
Cpa.g.sc180.2 Carica papaya HOM05D006693 ORTHO05D008092 5.5e-45 188.0 179 59.2
CAN.G532.47 Capsicum annuum HOM05D006693 ORTHO05D008092 2.5e-42 179.1 89 93.3
ClCG07G007840 Citrullus lanatus HOM05D006693 ORTHO05D008092 9.0e-32 144.1 109 60.6
Actinidia27361 Actinidia chinensis HOM05D006693 ORTHO05D008092 3.0e-27 129.0 100 62.0
Cpa.g.c42974 Carica papaya HOM05D006693 ORTHO05D008092 4.3e-26 125.2 97 61.9
Cpa.g.sc180.5 Carica papaya HOM05D006693 ORTHO05D008092 2.8e-25 122.5 93 61.3
SEGI_11223 Sequoiadendron giganteum HOM05D006693 ORTHO05D008092 3.4e-23 115.5 87 66.7
SEGI_38420 Sequoiadendron giganteum HOM05D006693 ORTHO05D008092 3.4e-23 115.5 87 66.7
Cpa.g.sc180.3 Carica papaya HOM05D006693 ORTHO05D008092 1.9e-21 109.8 81 65.4
Actinidia33728 Actinidia chinensis HOM05D006693 ORTHO05D008092 6.9e-16 91.3 67 74.6
Sabra01G0074000 Salix brachista HOM05D000115 ORTHO05D000464 2.6e-07 62.8 57 59.6


User provided reference genes

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