Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen08g029890 Solanum pennellii HOM05D005438 ORTHO05D006744 1.0e-199 699.9 362 100.0
Solyc08g081580.4 Solanum lycopersicum HOM05D005438 ORTHO05D006744 1.2e-192 676.4 362 95.9
PGSC0003DMG400012320 Solanum tuberosum HOM05D005438 ORTHO05D006744 4.8e-189 664.5 364 94.2
CAN.G532.38 Capsicum annuum HOM05D005438 ORTHO05D006744 2.1e-181 639.0 364 90.7
Nitab4.5_0003015g0090 Nicotiana tabacum HOM05D005438 ORTHO05D006744 5.9e-179 630.9 363 89.0
Nitab4.5_0007906g0070 Nicotiana tabacum HOM05D005438 ORTHO05D006744 2.7e-176 622.1 363 89.0
Peaxi162Scf00074g01737 Petunia axillaris HOM05D005438 ORTHO05D006744 2.9e-170 602.1 365 85.8
COL.COLO4_08362 Corchorus olitorius HOM05D005438 ORTHO05D006744 4.7e-120 435.3 367 62.9
Gohir.D03G078500 Gossypium hirsutum HOM05D005438 ORTHO05D006744 2.3e-119 433.0 368 64.7
Gohir.A02G105300 Gossypium hirsutum HOM05D005438 ORTHO05D006744 1.2e-118 430.6 368 64.7
Gorai.003G085600 Gossypium raimondii HOM05D005438 ORTHO05D006744 2.0e-118 429.9 369 64.8
GSVIVG01019417001 Vitis vinifera HOM05D005438 ORTHO05D006744 8.3e-117 424.5 367 62.4
Thecc.03G286500 Theobroma cacao HOM05D005438 ORTHO05D006744 2.4e-116 422.9 367 62.9
Duzib084G0802 Durio zibethinus HOM05D005438 ORTHO05D006744 9.2e-116 421.0 368 62.0
Dinv37597 Davidia involucrata HOM05D005438 ORTHO05D006744 1.3e-114 417.2 369 62.3
Rhsim02G0235700 Rhododendron simsii HOM05D005438 ORTHO05D006744 6.6e-114 414.8 372 61.8
Actinidia10609 Actinidia chinensis HOM05D005438 ORTHO05D006744 5.6e-113 411.8 374 61.8
arahy.Tifrunner.gnm1.ann1.Y7QUAU Arachis hypogaea HOM05D005438 ORTHO05D006744 5.6e-113 411.8 364 61.5
Cc08_g15250 Coffea canephora HOM05D005438 ORTHO05D006744 5.6e-113 411.8 376 60.6
Duzib205G0010 Durio zibethinus HOM05D005438 ORTHO05D006744 2.1e-112 409.8 369 60.4
Atru.chr9.2115 Acer truncatum HOM05D005438 ORTHO05D006744 3.6e-112 409.1 372 61.0
CiPaw.11G129800 Carya illinoinensis HOM05D005438 ORTHO05D006744 4.7e-112 408.7 368 59.5
TAR374G1319 Trochodendron aralioides HOM05D005438 ORTHO05D006744 2.3e-111 406.4 367 60.5
FAN08G1515 Fragaria x ananassa HOM05D005438 ORTHO05D006744 3.1e-111 406.0 366 60.7
Gorai.008G250200 Gossypium raimondii HOM05D005438 ORTHO05D006744 4.0e-111 405.6 371 60.1
arahy.Tifrunner.gnm1.ann1.I29YTG Arachis hypogaea HOM05D005438 ORTHO05D006744 6.8e-111 404.8 366 60.7
DCAR_004611 Daucus carota HOM05D005438 ORTHO05D006744 1.5e-110 403.7 372 60.8
Gohir.D12G233900 Gossypium hirsutum HOM05D005438 ORTHO05D006744 1.5e-110 403.7 371 59.6
Prupe.5G106500 Prunus persica HOM05D005438 ORTHO05D006744 1.5e-110 403.7 367 59.1
RcHm_v2.0_Chr7g0196591 Rosa chinensis HOM05D005438 ORTHO05D006744 1.5e-110 403.7 367 60.2
Phvul.002G293100 Phaseolus vulgaris HOM05D005438 ORTHO05D006744 2.0e-110 403.3 366 58.5
CsaV3_5G002390 Cucumis sativus L. HOM05D005438 ORTHO05D006744 2.6e-110 402.9 366 58.7
FAN18G2027 Fragaria x ananassa HOM05D005438 ORTHO05D006744 2.6e-110 402.9 363 60.1
FvH4_5g03190 Fragaria vesca HOM05D005438 ORTHO05D006744 3.4e-110 402.5 363 60.1
MD14G1111900 Malus domestica HOM05D005438 ORTHO05D006744 3.4e-110 402.5 365 60.0
FAN13G0364 Fragaria x ananassa HOM05D005438 ORTHO05D006744 9.9e-110 401.0 363 59.5
FAN04G0810 Fragaria x ananassa HOM05D005438 ORTHO05D006744 1.7e-109 400.2 367 60.2
Ciclev10020644m.g Citrus clementina HOM05D005438 ORTHO05D006744 3.7e-109 399.1 374 58.8
MELO3C005715.2 Cucumis melo HOM05D005438 ORTHO05D006744 3.7e-109 399.1 366 57.4
TWI60G1446 Tripterygium wilfordii HOM05D005438 ORTHO05D006744 4.9e-109 398.7 372 59.1
Ca_10950_v3 Cicer arietinum L. HOM05D005438 ORTHO05D006744 8.3e-109 397.9 368 60.3
QL12p031793 Quercus lobata HOM05D005438 ORTHO05D006744 1.9e-108 396.7 404 55.7
Migut.J01399 Erythranthe guttata HOM05D005438 ORTHO05D006744 2.4e-108 396.4 364 59.6
Glyma.08G018100 Glycine max HOM05D005438 ORTHO05D006744 2.4e-108 396.4 369 60.4
Sed0027839 Sechium edule HOM05D005438 ORTHO05D006744 3.2e-108 396.0 368 59.8
VMungo0251G0328 Vigna mungo HOM05D005438 ORTHO05D006744 3.2e-108 396.0 366 59.0
Lalb_Chr05g0224491 Lupinus albus HOM05D005438 ORTHO05D006744 5.4e-108 395.2 366 60.4
Eucgr.L02379 Eucalyptus grandis HOM05D005438 ORTHO05D006744 1.6e-107 393.7 366 59.8
MBI11_g09068_MAGBIO Magnolia biondii HOM05D005438 ORTHO05D006744 1.6e-107 393.7 353 60.6
CSS0046697 Camellia sinensis var. sinensis HOM05D005438 ORTHO05D006744 2.7e-107 392.9 369 58.8
CANSAT21G0041 Cannabis sativa HOM05D005438 ORTHO05D006744 2.7e-107 392.9 376 58.2
Eucgr.D01812 Eucalyptus grandis HOM05D005438 ORTHO05D006744 2.7e-107 392.9 366 59.8
vmacro11410 Vaccinium macrocarpon HOM05D005438 ORTHO05D006744 2.7e-107 392.9 365 60.8
Nn1g01673 Nelumbo nucifera HOM05D005438 ORTHO05D006744 6.0e-107 391.7 391 57.0
Lj4g0011941 Lotus japonicus HOM05D005438 ORTHO05D006744 1.3e-106 390.6 377 57.6
Atru.BG.199.p Acer truncatum HOM05D005438 ORTHO05D006744 6.6e-106 388.3 366 59.8
Manes.01G057900 Manihot esculenta HOM05D005438 ORTHO05D006744 1.5e-105 387.1 404 56.7
Glyma.05G211800 Glycine max HOM05D005438 ORTHO05D006744 5.6e-105 385.2 371 57.4
SGA_v2.0_scaffold173G39139 Striga asiatica HOM05D005438 ORTHO05D006744 4.7e-104 382.1 394 57.6
ECA233G5263 Erigeron canadensis HOM05D005438 ORTHO05D006744 2.3e-103 379.8 371 56.6
ClCG01G002320 Citrullus lanatus HOM05D005438 ORTHO05D006744 4.0e-103 379.0 364 56.9
Psat7g029680 Pisum sativum HOM05D005438 ORTHO05D006744 5.2e-103 378.6 366 57.9
Hund11433 Selenicereus undatus HOM05D005438 ORTHO05D006744 1.2e-102 377.5 371 55.8
Medtr8g098940 Medicago truncatula HOM05D005438 ORTHO05D006744 2.6e-102 376.3 371 58.2
HanXRQChr02g0049721 Helianthus annuus HOM05D005438 ORTHO05D006744 3.4e-102 375.9 366 57.4
AUR62019752 Chenopodium quinoa HOM05D005438 ORTHO05D006744 5.8e-102 375.2 374 57.8
PGR031G2565 Punica granatum HOM05D005438 ORTHO05D006744 5.8e-102 375.2 366 56.8
Lsat_1_v5_gn_3_8761 Lactuca sativa HOM05D005438 ORTHO05D006744 1.7e-101 373.6 364 56.6
Aqoxy7G00195 Aquilegia oxysepala HOM05D005438 ORTHO05D006744 3.2e-100 369.4 378 55.8
TPR.G12953 Trifolium pratense HOM05D005438 ORTHO05D006744 3.5e-99 365.9 366 57.7
Migut.A00720 Erythranthe guttata HOM05D005438 ORTHO05D006744 6.0e-99 365.2 372 56.7
Ah.12g051920 Amaranthus hybridus HOM05D005438 ORTHO05D006744 7.8e-99 364.8 377 56.0
Lj2C178T12 Lonicera japonica HOM05D005438 ORTHO05D006744 7.8e-99 364.8 378 55.0
THA.LOC104817794 Tarenaya hassleriana HOM05D005438 ORTHO05D006744 1.0e-98 364.4 381 55.1
AUR62010754 Chenopodium quinoa HOM05D005438 ORTHO05D006744 1.7e-98 363.6 365 55.1
Potri.003G132600 Populus trichocarpa HOM05D005438 ORTHO05D006744 6.6e-98 361.7 410 50.5
Sabra03G0095000 Salix brachista HOM05D005438 ORTHO05D006744 4.3e-97 359.0 409 49.9
Aa31LG2G1070 Aethionema arabicum HOM05D005438 ORTHO05D006744 1.2e-96 357.5 387 54.5
Gohir.A12G233400 Gossypium hirsutum HOM05D005438 ORTHO05D006744 1.6e-96 357.1 370 56.5
BcaB07g31422 Brassica carinata HOM05D005438 ORTHO05D006744 1.8e-95 353.6 401 52.9
AL2G11130 Arabidopsis lyrata HOM05D005438 ORTHO05D006744 2.0e-94 350.1 393 55.2
BcaB07g31532 Brassica carinata HOM05D005438 ORTHO05D006744 2.0e-94 350.1 407 52.8
EL10Ac5g12834 Beta vulgaris HOM05D005438 ORTHO05D006744 1.7e-93 347.1 349 54.7
Carub.0002s0086 Capsella rubella HOM05D005438 ORTHO05D006744 8.4e-93 344.7 394 53.6
AT1G63980 Arabidopsis thaliana HOM05D005438 ORTHO05D006744 1.4e-92 344.0 397 52.4
PSO017G3503 Papaver somniferum HOM05D005438 ORTHO05D006744 2.4e-92 343.2 391 51.7
A09p14060 Brassica napus HOM05D005438 ORTHO05D006744 3.2e-92 342.8 398 53.3
Thhalv10023525m.g Eutrema salsugineum HOM05D005438 ORTHO05D006744 4.2e-92 342.4 385 54.8
PSO478G3903 Papaver somniferum HOM05D005438 ORTHO05D006744 1.2e-91 340.9 389 52.2
PSO266G0069 Papaver somniferum HOM05D005438 ORTHO05D006744 3.5e-91 339.3 391 53.2
C09p18360 Brassica napus HOM05D005438 ORTHO05D006744 6.0e-91 338.6 407 52.3
CARHR047000 Cardamine hirsuta HOM05D005438 ORTHO05D006744 7.8e-91 338.2 388 54.4
Zm00001eb001860 Zea mays HOM05D005438 ORTHO05D006744 7.8e-91 338.2 386 52.1
BcaC04g22661 Brassica carinata HOM05D005438 ORTHO05D006744 2.3e-90 336.7 402 52.2
A09p15160 Brassica napus HOM05D005438 ORTHO05D006744 1.5e-89 334.0 407 51.6
BraA09t37053Z Brassica rapa HOM05D005438 ORTHO05D006744 7.3e-89 331.6 405 52.3
CSS0015982 Camellia sinensis var. sinensis HOM05D005438 ORTHO05D006744 1.3e-88 330.9 361 54.8
Sp2g00710 Schrenkiella parvula HOM05D005438 ORTHO05D006744 1.3e-88 330.9 412 50.5
Os03g0125300 Oryza sativa ssp. japonica HOM05D005438 ORTHO05D006744 2.8e-88 329.7 387 51.2
MD06G1091000 Malus domestica HOM05D005438 ORTHO05D006744 8.1e-88 328.2 362 52.2
BraA09t37158Z Brassica rapa HOM05D005438 ORTHO05D006744 1.1e-87 327.8 411 51.3
BolC9t54592H Brassica oleracea HOM05D005438 ORTHO05D006744 1.8e-87 327.0 406 52.0
BolC9t54729H Brassica oleracea HOM05D005438 ORTHO05D006744 3.1e-87 326.2 411 50.9
C09p16950 Brassica napus HOM05D005438 ORTHO05D006744 1.2e-86 324.3 407 51.8
ATR0661G541 Amborella trichopoda HOM05D005438 ORTHO05D006744 2.6e-86 323.2 395 49.1
HanXRQChr17g0533211 Helianthus annuus HOM05D005438 ORTHO05D006744 1.9e-84 317.0 360 55.3
Sc01g0009850 Simmondsia chinensis HOM05D005438 ORTHO05D006744 9.3e-84 314.7 311 56.6
unitig_32.g10979 Utricularia gibba HOM05D005438 ORTHO05D006744 7.9e-83 311.6 329 55.0
CDE04G0809 Ceratophyllum demersum HOM05D005438 ORTHO05D006744 9.6e-81 304.7 364 51.1
HPP92_021018 Vanilla planifolia HOM05D005438 ORTHO05D006744 1.5e-78 297.4 383 48.8
SEGI_20773 Sequoiadendron giganteum HOM05D005438 ORTHO05D006744 3.5e-75 286.2 429 43.4
Haze_08758 Corylus avellana HOM05D005438 ORTHO05D006744 1.9e-65 253.8 271 53.5
SMO134G0098 Selaginella moellendorffii HOM05D005438 ORTHO05D006744 1.5e-49 201.1 364 37.9
SHI31900 Sapria himalayana HOM05D005438 ORTHO05D006744 3.3e-49 199.9 295 44.1
Mapoly0090s0083 Marchantia polymorpha HOM05D005438 ORTHO05D006744 1.1e-47 194.9 480 33.8
Pp3c2_28530 Physcomitrium patens HOM05D005438 ORTHO05D006744 4.1e-47 193.0 402 35.8
BcaC04g22519 Brassica carinata HOM05D005438 ORTHO05D006744 1.5e-46 191.0 278 47.1
Lsat_1_v5_gn_1_49360 Lactuca sativa HOM05D005438 ORTHO05D006744 1.0e-42 178.3 187 52.9
Lsat_1_v5_gn_5_103140 Lactuca sativa HOM05D005438 ORTHO05D006744 1.0e-42 178.3 187 52.9
Lsat_1_v5_gn_9_38321 Lactuca sativa HOM05D005438 ORTHO05D006744 1.0e-42 178.3 187 52.9
CSS0040427 Camellia sinensis var. sinensis HOM05D005438 ORTHO05D006744 1.8e-42 177.6 142 66.2
AagrBONN_evm.TU.Sc2ySwM_344.4712 Anthoceros agrestis HOM05D005438 ORTHO05D006744 1.4e-39 167.9 529 29.3
Actinidia28345 Actinidia chinensis HOM05D005438 ORTHO05D006744 3.2e-36 156.8 366 38.3
Cpa.g.sc631.4 Carica papaya HOM05D005438 ORTHO05D006744 4.2e-36 156.4 143 58.7
CDE12G0222 Ceratophyllum demersum HOM05D005438 ORTHO05D006744 2.2e-32 144.1 145 57.9
Pp3c7_27020 Physcomitrium patens HOM05D005438 ORTHO05D006744 2.7e-30 137.1 393 30.5
BcaNung05361 Brassica carinata HOM05D005438 ORTHO05D006744 4.2e-28 129.8 199 43.7
Cpa.g.c39085 Carica papaya HOM05D005438 ORTHO05D006744 5.7e-25 119.4 133 48.9
CBR_g35011 Chara braunii HOM05D005438 ORTHO05D006744 1.7e-24 117.9 312 31.4
Cre07.g347300 Chlamydomonas reinhardtii HOM05D005438 ORTHO05D021338 8.9e-18 95.5 377 27.6
Cre07.g347400 Chlamydomonas reinhardtii HOM05D005438 ORTHO05D006744 8.9e-18 95.5 377 27.6
ATR0661G444 Amborella trichopoda HOM05D005438 ORTHO05D006744 9.8e-17 92.0 172 37.2
ECA246G3112 Erigeron canadensis HOM05D005438 ORTHO05D006744 1.8e-15 87.8 84 56.0
HanXRQChr16g0521071 Helianthus annuus HOM05D005438 ORTHO05D006744 1.6e-11 74.7 42 83.3
ClCG01G002340 Citrullus lanatus HOM05D005438 ORTHO05D006744 1.3e-08 65.1 109 38.5
AagrBONN_evm.TU.Sc2ySwM_344.4702 Anthoceros agrestis HOM05D005438 ORTHO05D006744 4.1e-07 60.1 127 34.6
Cre01.g054000 Chlamydomonas reinhardtii HOM05D005438 ORTHO05D006744 4.6e-06 56.6 77 41.6
DCAR_031559 Daucus carota HOM05D037052 ORTHO05D177761 6.0e-06 56.2 35 74.3


User provided reference genes

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