Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen08g029430 Solanum pennellii HOM05D005411 ORTHO05D006463 5.7e-73 277.7 163 100.0
PGSC0003DMG403012339 Solanum tuberosum HOM05D005411 ORTHO05D006463 6.5e-69 264.2 164 86.6
Solyc08g081130.4 Solanum lycopersicum HOM05D005411 ORTHO05D006463 1.4e-68 263.1 163 96.9
CAN.G774.50 Capsicum annuum HOM05D005411 ORTHO05D006463 1.4e-58 229.9 167 76.6
Nitab4.5_0013184g0010 Nicotiana tabacum HOM05D005411 ORTHO05D006463 8.8e-58 227.3 154 79.9
Nitab4.5_0001615g0100 Nicotiana tabacum HOM05D005411 ORTHO05D006463 4.4e-57 224.9 154 77.9
Peaxi162Scf00119g00941 Petunia axillaris HOM05D005411 ORTHO05D006463 4.5e-54 214.9 163 72.4
CSS0034062 Camellia sinensis var. sinensis HOM05D005411 ORTHO05D006463 1.7e-45 186.4 126 74.6
Cc08_g14780 Coffea canephora HOM05D005411 ORTHO05D006463 1.1e-44 183.7 124 76.6
Gorai.003G158500 Gossypium raimondii HOM05D005411 ORTHO05D006463 5.5e-44 181.4 128 74.2
Actinidia02004 Actinidia chinensis HOM05D005411 ORTHO05D006463 7.2e-44 181.0 128 73.4
Gohir.A03G016600 Gossypium hirsutum HOM05D005411 ORTHO05D006463 1.2e-43 180.3 128 73.4
Dinv38942 Davidia involucrata HOM05D005411 ORTHO05D006463 2.7e-43 179.1 120 75.8
Dinv38939 Davidia involucrata HOM05D005411 ORTHO05D006463 4.7e-43 178.3 121 74.4
MD06G1084200 Malus domestica HOM05D005411 ORTHO05D006463 6.1e-43 177.9 123 74.8
Manes.02G019300 Manihot esculenta HOM05D005411 ORTHO05D006463 8.0e-43 177.6 119 75.6
Oeu011043.2 Olea europaea HOM05D005411 ORTHO05D006463 1.8e-42 176.4 110 80.9
QL12p032900 Quercus lobata HOM05D005411 ORTHO05D006463 2.3e-42 176.0 122 73.0
Hma1.2p1_0377F.1_g139300 Hydrangea macrophylla HOM05D005411 ORTHO05D006463 3.0e-42 175.6 113 77.0
PSO478G4730 Papaver somniferum HOM05D005411 ORTHO05D006463 4.0e-42 175.3 125 71.2
CiPaw.11G134900 Carya illinoinensis HOM05D005411 ORTHO05D006463 5.2e-42 174.9 123 74.0
Actinidia14564 Actinidia chinensis HOM05D005411 ORTHO05D006463 6.8e-42 174.5 128 71.1
Eucgr.H02261 Eucalyptus grandis HOM05D005411 ORTHO05D006463 1.2e-41 173.7 112 79.5
Lsat_1_v5_gn_6_6580 Lactuca sativa HOM05D005411 ORTHO05D006463 1.2e-41 173.7 119 74.8
Ciclev10022634m.g Citrus clementina HOM05D005411 ORTHO05D006463 1.5e-41 173.3 140 67.1
RcHm_v2.0_Chr7g0197541 Rosa chinensis HOM05D005411 ORTHO05D006463 1.5e-41 173.3 132 68.9
CsaV3_4G005950 Cucumis sativus L. HOM05D005411 ORTHO05D006463 2.6e-41 172.6 119 73.1
GSVIVG01019751001 Vitis vinifera HOM05D005411 ORTHO05D006463 2.6e-41 172.6 126 73.0
Eucgr.L02732 Eucalyptus grandis HOM05D005411 ORTHO05D006463 3.4e-41 172.2 112 78.6
FvH4_5g02510 Fragaria vesca HOM05D005411 ORTHO05D006463 3.4e-41 172.2 113 77.0
PSO782G3895 Papaver somniferum HOM05D005411 ORTHO05D006463 4.4e-41 171.8 125 70.4
Potri.001G103800 Populus trichocarpa HOM05D005411 ORTHO05D006463 4.4e-41 171.8 127 70.9
Migut.A00759 Erythranthe guttata HOM05D005411 ORTHO05D006463 1.3e-40 170.2 123 71.5
PGR042G1580 Punica granatum HOM05D005411 ORTHO05D006463 1.3e-40 170.2 108 79.6
CANSAT78G0141 Cannabis sativa HOM05D005411 ORTHO05D006463 2.2e-40 169.5 122 70.5
TWI60G1258 Tripterygium wilfordii HOM05D005411 ORTHO05D006463 8.3e-40 167.5 113 73.5
Thhalv10026496m.g Eutrema salsugineum HOM05D005411 ORTHO05D006463 1.1e-39 167.2 126 69.0
BraA03t14482Z Brassica rapa HOM05D000022 ORTHO05D000071 1.4e-39 166.8 126 67.5
MD14G1105400 Malus domestica HOM05D005411 ORTHO05D006463 2.4e-39 166.0 113 75.2
BcaNung01456 Brassica carinata HOM05D005411 ORTHO05D006463 3.1e-39 165.6 126 67.5
C07p52580 Brassica napus HOM05D000022 ORTHO05D000071 3.1e-39 165.6 126 67.5
BolC7t45755H Brassica oleracea HOM05D005411 ORTHO05D006463 3.1e-39 165.6 126 67.5
Prupe.5G100600 Prunus persica HOM05D005411 ORTHO05D006463 3.1e-39 165.6 126 69.0
AT4G23330 Arabidopsis thaliana HOM05D005411 ORTHO05D006463 4.1e-39 165.2 125 68.8
AL7G30140 Arabidopsis lyrata HOM05D005411 ORTHO05D006463 5.3e-39 164.9 115 72.2
A01p14570 Brassica napus HOM05D005411 ORTHO05D006463 5.3e-39 164.9 129 65.9
BraA01t01399Z Brassica rapa HOM05D005411 ORTHO05D006463 5.3e-39 164.9 129 65.9
Carub.0007s1784 Capsella rubella HOM05D005411 ORTHO05D006463 5.3e-39 164.9 125 67.2
Lalb_Chr09g0332851 Lupinus albus HOM05D005411 ORTHO05D006463 7.0e-39 164.5 137 66.4
ECA233G5385 Erigeron canadensis HOM05D005411 ORTHO05D006463 9.1e-39 164.1 122 70.5
HanXRQChr13g0394241 Helianthus annuus HOM05D005411 ORTHO05D006463 9.1e-39 164.1 116 72.4
THA.LOC104814574 Tarenaya hassleriana HOM05D005411 ORTHO05D006463 9.1e-39 164.1 128 65.6
Phvul.002G289800 Phaseolus vulgaris HOM05D005411 ORTHO05D006463 1.2e-38 163.7 130 67.7
BcaC09g51012 Brassica carinata HOM05D005411 ORTHO05D006463 1.6e-38 163.3 129 65.9
BolC1t01733H Brassica oleracea HOM05D005411 ORTHO05D006463 1.6e-38 163.3 129 65.9
ClCG07G008090 Citrullus lanatus HOM05D005411 ORTHO05D006463 2.0e-38 162.9 109 75.2
MBI18_g42863_MAGBIO Magnolia biondii HOM05D005411 ORTHO05D006463 3.5e-38 162.2 107 75.7
Sed0017646 Sechium edule HOM05D005411 ORTHO05D006463 3.5e-38 162.2 119 68.1
CARHR230670 Cardamine hirsuta HOM05D005411 ORTHO05D006463 4.5e-38 161.8 115 70.4
A03p54210 Brassica napus HOM05D005411 ORTHO05D006463 5.9e-38 161.4 119 70.6
SalBow4G3209 Salvia bowleyana HOM05D005411 ORTHO05D006463 5.9e-38 161.4 110 72.7
vmacro11335 Vaccinium macrocarpon HOM05D005411 ORTHO05D006463 1.7e-37 159.8 144 62.5
vmacro22820 Vaccinium macrocarpon HOM05D005411 ORTHO05D006463 1.7e-37 159.8 144 62.5
BcaC03g18356 Brassica carinata HOM05D005411 ORTHO05D006463 2.9e-37 159.1 115 70.4
C02p64340 Brassica napus HOM05D005411 ORTHO05D006463 2.9e-37 159.1 115 70.4
MSTRG.25610 Avicennia marina HOM05D005411 ORTHO05D006463 8.5e-37 157.5 122 64.8
BcaNung03266 Brassica carinata HOM05D005411 ORTHO05D006463 1.9e-36 156.4 119 67.2
Medtr8g098255 Medicago truncatula HOM05D005411 ORTHO05D006463 4.2e-36 155.2 108 73.1
ATR0680G335 Amborella trichopoda HOM05D005411 ORTHO05D006463 5.5e-36 154.8 106 73.6
Psat7g033000 Pisum sativum HOM05D005411 ORTHO05D006463 9.4e-36 154.1 108 70.4
TPR.G12871 Trifolium pratense HOM05D005411 ORTHO05D006463 2.1e-35 152.9 106 72.6
Nn1g01526 Nelumbo nucifera HOM05D005411 ORTHO05D006463 4.7e-35 151.8 121 64.5
Lj8E221T1 Lonicera japonica HOM05D005411 ORTHO05D006463 6.1e-35 151.4 103 72.8
Lj4g0004308 Lotus japonicus HOM05D005411 ORTHO05D006463 1.8e-34 149.8 115 68.7
CiPaw.12G092800 Carya illinoinensis HOM05D005411 ORTHO05D006463 4.0e-34 148.7 118 64.4
Ca_17530_v3 Cicer arietinum L. HOM05D005411 ORTHO05D006463 5.2e-34 148.3 127 63.8
unitig_46.g18551 Utricularia gibba HOM05D005411 ORTHO05D006463 5.2e-34 148.3 110 65.5
vmacro13959 Vaccinium macrocarpon HOM05D005411 ORTHO05D006463 5.2e-34 148.3 127 63.8
SGA_v2.0_scaffold173G39183 Striga asiatica HOM05D005411 ORTHO05D006463 2.0e-33 146.4 96 76.0
Thecc.03G279100 Theobroma cacao HOM05D005411 ORTHO05D006463 9.8e-33 144.1 97 77.3
MELO3C016353.2 Cucumis melo HOM05D005411 ORTHO05D006463 2.2e-32 142.9 97 75.3
Os07g0483400 Oryza sativa ssp. japonica HOM05D005411 ORTHO05D006463 2.8e-32 142.5 110 63.6
Aqoxy7G00317 Aquilegia oxysepala HOM05D005411 ORTHO05D006463 4.8e-32 141.7 101 72.3
FAN13G2772 Fragaria x ananassa HOM05D005411 ORTHO05D006463 1.1e-31 140.6 97 73.2
Cfa012226 Carpinus fangiana HOM05D005411 ORTHO05D006463 1.8e-31 139.8 101 69.3
Sabra01G0078400 Salix brachista HOM05D005411 ORTHO05D006463 2.4e-31 139.4 109 67.0
FAN04G3034 Fragaria x ananassa HOM05D005411 ORTHO05D006463 3.1e-31 139.0 97 72.2
FAN18G0348 Fragaria x ananassa HOM05D005411 ORTHO05D006463 9.1e-31 137.5 91 75.8
arahy.Tifrunner.gnm1.ann1.FJ1DNZ Arachis hypogaea HOM05D005411 ORTHO05D006463 2.0e-30 136.3 93 74.2
arahy.Tifrunner.gnm1.ann1.P2DUDW Arachis hypogaea HOM05D005411 ORTHO05D006463 2.0e-30 136.3 93 74.2
Duzib205G1808 Durio zibethinus HOM05D005411 ORTHO05D006463 2.7e-30 136.0 77 87.0
AUR62022799 Chenopodium quinoa HOM05D005411 ORTHO05D006463 3.5e-30 135.6 96 67.7
FAN08G0497 Fragaria x ananassa HOM05D005411 ORTHO05D006463 4.5e-30 135.2 97 71.1
Aa31LG9G10800 Aethionema arabicum HOM05D005411 ORTHO05D006463 1.7e-29 133.3 91 71.4
TAR374G0701 Trochodendron aralioides HOM05D005411 ORTHO05D006463 1.7e-29 133.3 96 69.8
Rhsim07G0090400 Rhododendron simsii HOM05D005411 ORTHO05D006463 5.0e-29 131.7 106 66.0
Hund16039 Selenicereus undatus HOM05D005411 ORTHO05D006463 8.6e-29 131.0 101 64.4
Glyma.05G208200 Glycine max HOM05D005411 ORTHO05D006463 1.5e-28 130.2 91 73.6
SEGI_09083 Sequoiadendron giganteum HOM05D005411 ORTHO05D006463 1.6e-27 126.7 110 57.3
VMungo0251G3187 Vigna mungo HOM05D005411 ORTHO05D006463 2.1e-27 126.3 103 66.0
CDE11G0686 Ceratophyllum demersum HOM05D003133 ORTHO05D006463 2.0e-25 119.8 89 66.3
Gohir.D03G151300 Gossypium hirsutum HOM05D005411 ORTHO05D006463 2.0e-25 119.8 91 70.3
PGSC0003DMG402012339 Solanum tuberosum HOM05D005411 ORTHO05D006463 7.5e-25 117.9 91 73.6
BolC5t34770H Brassica oleracea HOM05D005411 ORTHO05D006463 4.9e-24 115.2 93 63.4
BcaNung00981 Brassica carinata HOM05D005411 ORTHO05D006463 6.3e-24 114.8 141 49.6
AUR62012163 Chenopodium quinoa HOM05D005411 ORTHO05D006463 6.3e-24 114.8 135 47.4
Zm00001eb104990 Zea mays HOM05D005411 ORTHO05D006463 8.3e-24 114.4 86 65.1
C01p18020 Brassica napus HOM05D005411 ORTHO05D006463 1.4e-23 113.6 92 65.2
EL10Ac2g04672 Beta vulgaris HOM05D005411 ORTHO05D006463 1.2e-22 110.5 79 65.8
Sc01g0009600 Simmondsia chinensis HOM05D005411 ORTHO05D006463 1.2e-22 110.5 88 64.8
Pp3c11_2200 Physcomitrium patens HOM05D005411 ORTHO05D006463 1.6e-22 110.2 122 47.5
BcaNung00977 Brassica carinata HOM05D005411 ORTHO05D006463 7.8e-22 107.8 68 75.0
Mapoly0008s0209 Marchantia polymorpha HOM05D005411 ORTHO05D006463 1.3e-21 107.1 103 49.5
CDE09G0994 Ceratophyllum demersum HOM05D005411 ORTHO05D006463 2.5e-20 102.8 76 67.1
Duzib084G0828 Durio zibethinus HOM05D005411 ORTHO05D006463 1.0e-18 97.4 97 55.7
CSS0044618 Camellia sinensis var. sinensis HOM05D005411 ORTHO05D006463 1.2e-17 94.0 62 79.0
AagrBONN_evm.TU.Sc2ySwM_369.479 Anthoceros agrestis HOM05D005411 ORTHO05D006463 2.2e-16 89.7 84 52.4
Hma1.2p1_0377F.1_g139290 Hydrangea macrophylla HOM05D005411 ORTHO05D006463 4.9e-16 88.6 70 68.6
Potri.003G127900 Populus trichocarpa HOM05D005411 ORTHO05D006463 3.2e-15 85.9 72 61.1
Oeu047371.1 Olea europaea HOM05D005411 ORTHO05D006463 4.1e-15 85.5 64 65.6
Atru.chr9.2185 Acer truncatum HOM05D005411 ORTHO05D006463 2.0e-14 83.2 64 64.1
BcaC01g04135 Brassica carinata HOM05D005411 ORTHO05D006463 2.3e-13 79.7 56 67.9
SHI07138 Sapria himalayana HOM05D005411 ORTHO05D006463 2.5e-12 76.3 68 54.4
C03p44770 Brassica napus HOM05D005411 ORTHO05D006463 5.6e-12 75.1 68 58.8
BolC3t16740H Brassica oleracea HOM05D005411 ORTHO05D006463 7.3e-12 74.7 68 58.8
SMO329G0027 Selaginella moellendorffii HOM05D005411 ORTHO05D006463 1.2e-11 73.9 80 46.2
SMO358G0504 Selaginella moellendorffii HOM05D005411 ORTHO05D006463 1.2e-11 73.9 80 46.2
BcaB05g22557 Brassica carinata HOM05D002513 ORTHO05D002720 1.4e-10 70.5 69 56.5
Sabra17G0003100 Salix brachista HOM05D005411 ORTHO05D006463 7.5e-09 64.7 47 70.2
Sabra17G0003800 Salix brachista HOM05D005411 ORTHO05D006463 7.5e-09 64.7 47 70.2
HPP92_001497 Vanilla planifolia HOM05D005411 ORTHO05D006463 9.8e-09 64.3 46 65.2
Sabra18G0123000 Salix brachista HOM05D005411 ORTHO05D006463 2.9e-08 62.8 47 68.1
Sabra14G0123800 Salix brachista HOM05D005411 ORTHO05D006463 1.1e-07 60.8 47 66.0
BcaC08g44430 Brassica carinata HOM05D000522 ORTHO05D021960 7.8e-06 54.7 55 56.4
C07p11360 Brassica napus HOM05D001537 ORTHO05D021960 7.8e-06 54.7 86 40.7


User provided reference genes

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