Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen08g029020 Solanum pennellii HOM05D005678 ORTHO05D006894 2.4e-78 295.4 152 100.0
PGSC0003DMG400003060 Solanum tuberosum HOM05D005678 ORTHO05D006894 5.3e-73 277.7 152 94.1
Nitab4.5_0001356g0020 Nicotiana tabacum HOM05D005678 ORTHO05D006894 5.7e-51 204.5 153 74.5
Nitab4.5_0008905g0030 Nicotiana tabacum HOM05D005678 ORTHO05D006894 6.3e-50 201.1 152 73.0
CAN.G859.10 Capsicum annuum HOM05D005678 ORTHO05D006894 5.9e-48 194.5 180 61.1
HanXRQChr17g0536371 Helianthus annuus HOM05D005678 ORTHO05D006894 1.8e-36 156.4 167 55.1
CiPaw.08G018100 Carya illinoinensis HOM05D005678 ORTHO05D006894 1.6e-32 143.3 163 54.0
GSVIVG01035539001 Vitis vinifera HOM05D005678 ORTHO05D006894 2.0e-32 142.9 163 54.6
Dinv16205 Davidia involucrata HOM05D005678 ORTHO05D006894 1.0e-31 140.6 166 51.2
Cc08_g14330 Coffea canephora HOM05D005678 ORTHO05D006894 1.3e-31 140.2 163 50.3
CiPaw.07G214300 Carya illinoinensis HOM05D005678 ORTHO05D006894 1.5e-30 136.7 141 56.7
BcaC09g51917 Brassica carinata HOM05D005678 ORTHO05D006894 7.2e-30 134.4 176 48.9
C01p07670 Brassica napus HOM05D005678 ORTHO05D006894 7.2e-30 134.4 176 48.9
BolC1t00747H Brassica oleracea HOM05D005678 ORTHO05D006894 7.2e-30 134.4 176 48.9
Actinidia03578 Actinidia chinensis HOM05D005678 ORTHO05D006894 9.4e-30 134.0 126 58.7
Thecc.09G005500 Theobroma cacao HOM05D005678 ORTHO05D006894 9.4e-30 134.0 94 70.2
vmacro00604 Vaccinium macrocarpon HOM05D005678 ORTHO05D006894 1.2e-29 133.7 150 53.3
CsaV3_2G031490 Cucumis sativus L. HOM05D005678 ORTHO05D006894 1.6e-29 133.3 173 50.9
Manes.03G002700 Manihot esculenta HOM05D005678 ORTHO05D006894 1.6e-29 133.3 171 48.0
MELO3C011199.2 Cucumis melo HOM05D005678 ORTHO05D006894 8.0e-29 131.0 173 48.0
SalBow6G4551 Salvia bowleyana HOM05D005678 ORTHO05D006894 8.0e-29 131.0 153 49.0
QL12p024739 Quercus lobata HOM05D005678 ORTHO05D006894 1.0e-28 130.6 165 49.1
Cpa.g.sc244.11 Carica papaya HOM05D005678 ORTHO05D006894 1.8e-28 129.8 164 51.2
Migut.A00794 Erythranthe guttata HOM05D005678 ORTHO05D006894 1.8e-28 129.8 94 63.8
Eucgr.C02102 Eucalyptus grandis HOM05D005678 ORTHO05D006894 1.8e-28 129.8 108 62.0
Gohir.D05G068200 Gossypium hirsutum HOM05D005678 ORTHO05D006894 3.0e-28 129.0 145 55.9
Ciclev10009502m.g Citrus clementina HOM05D005678 ORTHO05D006894 5.2e-28 128.3 94 64.9
Gorai.009G069000 Gossypium raimondii HOM05D005678 ORTHO05D006894 5.2e-28 128.3 147 54.4
HanXRQChr06g0173291 Helianthus annuus HOM05D005678 ORTHO05D006894 8.8e-28 127.5 165 47.3
Sp7g29220 Schrenkiella parvula HOM05D005678 ORTHO05D006894 8.8e-28 127.5 186 43.5
ECA246G1984 Erigeron canadensis HOM05D005678 ORTHO05D006894 1.2e-27 127.1 93 66.7
ClCG08G012760 Citrullus lanatus HOM05D005678 ORTHO05D006894 1.5e-27 126.7 178 46.6
Duzib187G0563 Durio zibethinus HOM05D005678 ORTHO05D006894 2.0e-27 126.3 112 58.9
Hma1.2p1_0102F.1_g049830 Hydrangea macrophylla HOM05D005678 ORTHO05D006894 2.0e-27 126.3 156 46.8
BraA01t00642Z Brassica rapa HOM05D005678 ORTHO05D006894 2.6e-27 125.9 182 44.0
Gohir.A05G065600 Gossypium hirsutum HOM05D005678 ORTHO05D006894 2.6e-27 125.9 169 47.9
MD00G1173100 Malus domestica HOM05D005678 ORTHO05D006894 3.4e-27 125.6 98 60.2
MD08G1134200 Malus domestica HOM05D005678 ORTHO05D006894 3.4e-27 125.6 98 60.2
CARHR117620 Cardamine hirsuta HOM05D005678 ORTHO05D006894 5.7e-27 124.8 90 67.8
Lsat_1_v5_gn_3_22720 Lactuca sativa HOM05D005678 ORTHO05D006894 7.5e-27 124.4 104 61.5
THA.LOC104801628 Tarenaya hassleriana HOM05D005678 ORTHO05D006894 7.5e-27 124.4 180 43.3
A01p06940 Brassica napus HOM05D005678 ORTHO05D006894 9.8e-27 124.0 153 48.4
TAR383G0152 Trochodendron aralioides HOM05D005678 ORTHO05D006894 9.8e-27 124.0 172 42.4
AL7G20710 Arabidopsis lyrata HOM05D005678 ORTHO05D006894 1.7e-26 123.2 161 44.7
SGA_v2.0_scaffold146G36252 Striga asiatica HOM05D005678 ORTHO05D006894 1.7e-26 123.2 177 46.3
Psat6g032200 Pisum sativum HOM05D005678 ORTHO05D006894 2.2e-26 122.9 171 46.8
MSTRG.1882 Avicennia marina HOM05D005678 ORTHO05D006894 2.8e-26 122.5 175 45.7
Carub.0007s0920 Capsella rubella HOM05D005678 ORTHO05D006894 2.8e-26 122.5 192 41.7
Prupe.1G462000 Prunus persica HOM05D005678 ORTHO05D006894 2.8e-26 122.5 91 65.9
Aa31LG2G19000 Aethionema arabicum HOM05D005678 ORTHO05D006894 4.8e-26 121.7 169 45.6
Lj5g0006596 Lotus japonicus HOM05D005678 ORTHO05D006894 6.3e-26 121.3 177 43.5
Sed0002806 Sechium edule HOM05D005678 ORTHO05D006894 6.3e-26 121.3 179 44.7
Carub.0004s0379 Capsella rubella HOM05D005678 ORTHO05D006894 8.3e-26 120.9 87 66.7
Duzib168G0107 Durio zibethinus HOM05D005678 ORTHO05D006894 1.1e-25 120.6 98 63.3
AT2G24440 Arabidopsis thaliana HOM05D005678 ORTHO05D006894 1.4e-25 120.2 87 66.7
PSO170G6167 Papaver somniferum HOM05D005678 ORTHO05D006894 1.8e-25 119.8 157 45.2
AL4G14870 Arabidopsis lyrata HOM05D005678 ORTHO05D006894 2.4e-25 119.4 87 65.5
MBI16_g25208_MAGBIO Magnolia biondii HOM05D005678 ORTHO05D006894 2.4e-25 119.4 164 47.6
Potri.018G004901 Populus trichocarpa HOM05D005678 ORTHO05D006894 2.4e-25 119.4 103 53.4
Sc09g0007960 Simmondsia chinensis HOM05D005678 ORTHO05D006894 2.4e-25 119.4 99 58.6
arahy.Tifrunner.gnm1.ann1.V3TD4F Arachis hypogaea HOM05D005678 ORTHO05D006894 3.1e-25 119.0 168 46.4
arahy.Tifrunner.gnm1.ann1.XT6XQE Arachis hypogaea HOM05D005678 ORTHO05D006894 3.1e-25 119.0 168 46.4
AT4G31360 Arabidopsis thaliana HOM05D005678 ORTHO05D006894 4.1e-25 118.6 189 41.3
THA.LOC104803592 Tarenaya hassleriana HOM05D005678 ORTHO05D006894 4.1e-25 118.6 94 59.6
Os11g0704000 Oryza sativa ssp. japonica HOM05D005678 ORTHO05D006894 7.0e-25 117.9 89 66.3
Oeu009186.1 Olea europaea HOM05D005678 ORTHO05D006894 9.1e-25 117.5 148 49.3
Sc09g0007970 Simmondsia chinensis HOM05D005678 ORTHO05D006894 9.1e-25 117.5 166 44.0
Zm00001eb409020 Zea mays HOM05D005678 ORTHO05D006894 9.1e-25 117.5 95 64.2
CANSAT25G2809 Cannabis sativa HOM05D005678 ORTHO05D006894 1.2e-24 117.1 89 62.9
Sabra18G0010600 Salix brachista HOM05D005678 ORTHO05D006894 1.2e-24 117.1 97 55.7
VMungo0647G1216 Vigna mungo HOM05D005678 ORTHO05D006894 1.2e-24 117.1 172 43.0
FAN15G3337 Fragaria x ananassa HOM05D005678 ORTHO05D006894 1.6e-24 116.7 146 47.9
PGR142G1712 Punica granatum HOM05D005678 ORTHO05D006894 2.0e-24 116.3 105 58.1
PSO063G6472 Papaver somniferum HOM05D005678 ORTHO05D006894 4.5e-24 115.2 140 46.4
RcHm_v2.0_Chr6g0312181 Rosa chinensis HOM05D005678 ORTHO05D006894 4.5e-24 115.2 149 46.3
A09p56300 Brassica napus HOM05D005678 ORTHO05D006894 5.9e-24 114.8 90 62.2
BraA09t41025Z Brassica rapa HOM05D005678 ORTHO05D006894 5.9e-24 114.8 90 62.2
BolC8t51499H Brassica oleracea HOM05D005678 ORTHO05D006894 1.0e-23 114.0 90 62.2
Ca_12878_v3 Cicer arietinum L. HOM05D005678 ORTHO05D006894 1.3e-23 113.6 92 57.6
TPR.G12081 Trifolium pratense HOM05D005678 ORTHO05D006894 1.3e-23 113.6 180 42.2
Thhalv10000334m.g Eutrema salsugineum HOM05D005678 ORTHO05D006894 1.7e-23 113.2 87 65.5
FAN27G1837 Fragaria x ananassa HOM05D005678 ORTHO05D006894 1.7e-23 113.2 148 47.3
C08p39250 Brassica napus HOM05D005678 ORTHO05D006894 2.2e-23 112.8 89 60.7
FAN20G0695 Fragaria x ananassa HOM05D005678 ORTHO05D006894 2.9e-23 112.5 148 48.0
BcaC02g08455 Brassica carinata HOM05D005678 ORTHO05D006894 3.8e-23 112.1 94 58.5
C04p54050 Brassica napus HOM05D005678 ORTHO05D006894 3.8e-23 112.1 94 58.5
BolC4t26956H Brassica oleracea HOM05D005678 ORTHO05D006894 3.8e-23 112.1 94 58.5
Os05g0250500 Oryza sativa ssp. japonica HOM05D005678 ORTHO05D006894 3.8e-23 112.1 133 52.6
BcaB06g27969 Brassica carinata HOM05D005678 ORTHO05D006894 5.0e-23 111.7 89 61.8
FvH4_2g30710 Fragaria vesca HOM05D005678 ORTHO05D006894 5.0e-23 111.7 185 42.2
FAN24G1799 Fragaria x ananassa HOM05D000178 ORTHO05D001582 5.0e-23 111.7 185 42.2
BolC3t21115H Brassica oleracea HOM05D005678 ORTHO05D006894 6.5e-23 111.3 118 51.7
Pp3c6_27420 Physcomitrium patens HOM05D005678 ORTHO05D006894 6.5e-23 111.3 109 52.3
Glyma.17G201900 Glycine max HOM05D005678 ORTHO05D006894 8.5e-23 110.9 110 54.5
Phvul.001G058200 Phaseolus vulgaris HOM05D005678 ORTHO05D006894 8.5e-23 110.9 89 61.8
Lalb_Chr24g0402441 Lupinus albus HOM05D005678 ORTHO05D006894 1.5e-22 110.2 142 44.4
A08p18690 Brassica napus HOM05D002168 ORTHO05D002277 3.2e-22 109.0 157 43.9
MD15G1109600 Malus domestica HOM05D005678 ORTHO05D006894 3.2e-22 109.0 169 40.2
Sabra06G0213900 Salix brachista HOM05D005678 ORTHO05D006894 3.2e-22 109.0 91 57.1
BraA04t17485Z Brassica rapa HOM05D005678 ORTHO05D006894 4.2e-22 108.6 94 56.4
Glyma.14G133100 Glycine max HOM05D005678 ORTHO05D006894 4.2e-22 108.6 124 50.0
A04p18760 Brassica napus HOM05D005678 ORTHO05D006894 7.2e-22 107.8 94 56.4
SGA_v2.0_scaffold144G35960 Striga asiatica HOM05D000250 ORTHO05D002850 9.5e-22 107.5 166 42.2
TWI34G1196 Tripterygium wilfordii HOM05D005678 ORTHO05D006894 9.5e-22 107.5 95 57.9
SHI21122 Sapria himalayana HOM05D005678 ORTHO05D006894 4.7e-21 105.1 88 58.0
COL.COLO4_19050 Corchorus olitorius HOM05D005678 ORTHO05D006894 6.1e-21 104.8 111 48.6
Aqoxy7G03048 Aquilegia oxysepala HOM05D005678 ORTHO05D006894 1.0e-20 104.0 194 39.2
TWI63G1651 Tripterygium wilfordii HOM05D005678 ORTHO05D006894 4.0e-20 102.1 92 54.3
SEGI_38696 Sequoiadendron giganteum HOM05D005678 ORTHO05D006894 5.2e-20 101.7 94 55.3
Sp4g03460 Schrenkiella parvula HOM05D005678 ORTHO05D006894 2.6e-19 99.4 82 54.9
BcaC07g40931 Brassica carinata HOM05D005678 ORTHO05D006894 5.7e-19 98.2 79 60.8
Pp3c5_240 Physcomitrium patens HOM05D005678 ORTHO05D006894 7.5e-19 97.8 97 48.5
Atru.chr7.2621 Acer truncatum HOM05D005678 ORTHO05D006894 2.2e-18 96.3 138 43.5
Aa31LG7G11430 Aethionema arabicum HOM05D005678 ORTHO05D006894 2.8e-18 95.9 205 36.1
Sabra18G0000200 Salix brachista HOM05D005678 ORTHO05D006894 3.7e-18 95.5 142 38.0
Mapoly0188s0010 Marchantia polymorpha HOM05D005678 ORTHO05D006894 6.3e-18 94.7 91 47.3
Hund19398 Selenicereus undatus HOM05D005678 ORTHO05D006894 8.3e-18 94.4 88 47.7
HPP92_015389 Vanilla planifolia HOM05D005678 ORTHO05D006894 3.1e-17 92.4 107 46.7
HPP92_027003 Vanilla planifolia HOM05D005678 ORTHO05D006894 9.2e-17 90.9 119 44.5
Peaxi162Scf00102g01516 Petunia axillaris HOM05D005678 ORTHO05D006894 2.0e-16 89.7 117 47.0
CARHR239240 Cardamine hirsuta HOM05D005678 ORTHO05D006894 6.6e-15 84.7 162 37.7
HanXRQChr04g0118101 Helianthus annuus HOM05D005678 ORTHO05D006894 8.6e-15 84.3 58 67.2
Haze_21702 Corylus avellana HOM05D005678 ORTHO05D006894 2.1e-13 79.7 56 66.1
BcaC01g01095 Brassica carinata HOM05D005678 ORTHO05D006894 2.8e-13 79.3 68 60.3
Haze_21709 Corylus avellana HOM05D005678 ORTHO05D006894 2.8e-13 79.3 49 77.6
Migut.E01115 Erythranthe guttata HOM05D005678 ORTHO05D006894 8.0e-13 77.8 93 44.1
Cre02.g120301 Chlamydomonas reinhardtii HOM05D005678 ORTHO05D006894 5.2e-12 75.1 71 47.9
Rhsim09G0030000 Rhododendron simsii HOM05D005678 ORTHO05D006894 6.8e-12 74.7 99 45.5
Migut.E01114 Erythranthe guttata HOM05D005678 ORTHO05D006894 1.5e-11 73.6 91 41.8
C03p88040 Brassica napus HOM05D005678 ORTHO05D006894 8.6e-07 57.8 73 43.8
CDE07G1371 Ceratophyllum demersum HOM05D005678 ORTHO05D006894 3.3e-06 55.8 126 34.1


User provided reference genes

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