Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen08g028770 Solanum pennellii HOM05D005348 ORTHO05D006635 0.0e+00 1610.9 782 100.0
CAN.G981.21 Capsicum annuum HOM05D005348 ORTHO05D006635 0.0e+00 1395.9 785 88.2
Nitab4.5_0002234g0010 Nicotiana tabacum HOM05D005348 ORTHO05D006635 0.0e+00 1137.5 821 72.7
Solyc08g080450.3 Solanum lycopersicum HOM05D005348 ORTHO05D006635 0.0e+00 1083.6 566 94.7
Migut.E01288 Erythranthe guttata HOM05D005348 ORTHO05D006635 0.0e+00 1076.2 719 73.9
CSS0016729 Camellia sinensis var. sinensis HOM05D005348 ORTHO05D006635 1.6e-306 1055.8 785 67.3
Dinv39001 Davidia involucrata HOM05D005348 ORTHO05D006635 3.9e-305 1051.2 781 68.2
Actinidia05223 Actinidia chinensis HOM05D005348 ORTHO05D006635 1.5e-304 1049.3 800 66.0
Cc08_g14090 Coffea canephora HOM05D005348 ORTHO05D006635 3.7e-295 1018.1 851 62.0
SGA_v2.0_scaffold144G35970 Striga asiatica HOM05D005348 ORTHO05D006635 2.0e-293 1012.3 775 65.9
Nitab4.5_0002853g0050 Nicotiana tabacum HOM05D005348 ORTHO05D006635 4.4e-288 994.6 790 69.0
QL12p017446 Quercus lobata HOM05D005348 ORTHO05D006635 1.5e-280 969.5 753 64.9
TAR375G0646 Trochodendron aralioides HOM05D005348 ORTHO05D006635 2.2e-279 965.7 752 65.0
GSVIVG01019819001 Vitis vinifera HOM05D005348 ORTHO05D006635 1.2e-277 959.9 849 59.4
FvH4_5g28890 Fragaria vesca HOM05D005348 ORTHO05D006635 3.5e-277 958.4 743 63.7
Thecc.03G272300 Theobroma cacao HOM05D005348 ORTHO05D006635 1.7e-276 956.1 641 70.8
Prupe.5G092400 Prunus persica HOM05D005348 ORTHO05D006635 1.6e-274 949.5 737 64.6
Sc05g0000210 Simmondsia chinensis HOM05D005348 ORTHO05D006635 6.1e-274 947.6 783 61.8
Psat2g181800 Pisum sativum HOM05D005348 ORTHO05D006635 1.0e-273 946.8 775 60.6
Duzib068G0163 Durio zibethinus HOM05D005348 ORTHO05D006635 4.4e-272 941.4 749 63.2
PGR031G1121 Punica granatum HOM05D005348 ORTHO05D006635 2.2e-271 939.1 758 63.1
Phvul.002G154300 Phaseolus vulgaris HOM05D005348 ORTHO05D006635 7.0e-270 934.1 713 64.2
ClCG01G003080 Citrullus lanatus HOM05D005348 ORTHO05D006635 2.7e-269 932.2 723 64.3
Rhsim07G0093800 Rhododendron simsii HOM05D005348 ORTHO05D006635 5.9e-269 931.0 935 54.0
Gorai.007G022400 Gossypium raimondii HOM05D005348 ORTHO05D006635 2.2e-268 929.1 746 62.5
Manes.02G025740 Manihot esculenta HOM05D005348 ORTHO05D006635 5.0e-268 927.9 742 63.5
TPR.G6715 Trifolium pratense HOM05D005348 ORTHO05D006635 8.5e-268 927.2 778 58.9
MD04G1066100 Malus domestica HOM05D005348 ORTHO05D006635 1.5e-267 926.4 733 63.0
Lj2g0017844 Lotus japonicus HOM05D005348 ORTHO05D006635 1.9e-267 926.0 751 61.7
Aqoxy7G00422 Aquilegia oxysepala HOM05D005348 ORTHO05D006635 2.5e-267 925.6 775 60.9
PSO782G2170 Papaver somniferum HOM05D005348 ORTHO05D006635 2.5e-267 925.6 715 62.7
Peaxi162Scf00714g00430 Petunia axillaris HOM05D005348 ORTHO05D006635 2.5e-267 925.6 548 84.5
Medtr5g010740 Medicago truncatula HOM05D005348 ORTHO05D006635 8.0e-266 920.6 776 59.7
vmacro13927 Vaccinium macrocarpon HOM05D005348 ORTHO05D006635 4.0e-265 918.3 860 57.2
CiPaw.11G140300 Carya illinoinensis HOM05D005348 ORTHO05D006635 5.2e-265 917.9 828 58.2
Eucgr.D01915 Eucalyptus grandis HOM05D005348 ORTHO05D006635 8.8e-265 917.1 781 60.7
PSO478G3496 Papaver somniferum HOM05D005348 ORTHO05D006635 1.7e-263 912.9 715 62.1
Sed0022971 Sechium edule HOM05D005348 ORTHO05D006635 2.0e-261 906.0 712 63.3
Sabra01G0082300 Salix brachista HOM05D005348 ORTHO05D006635 5.0e-260 901.4 749 61.1
SalBow1G6288 Salvia bowleyana HOM05D005348 ORTHO05D006635 5.0e-260 901.4 728 65.1
DCAR_006756 Daucus carota HOM05D005348 ORTHO05D006635 1.5e-259 899.8 783 60.2
arahy.Tifrunner.gnm1.ann1.SKE7H3 Arachis hypogaea HOM05D005348 ORTHO05D006635 4.2e-259 898.3 725 60.7
CANSAT21G2165 Cannabis sativa HOM05D005348 ORTHO05D006635 9.5e-259 897.1 741 60.3
Carub.0006s3081 Capsella rubella HOM05D005348 ORTHO05D006635 8.0e-258 894.0 744 60.8
arahy.Tifrunner.gnm1.ann1.C7APUF Arachis hypogaea HOM05D005348 ORTHO05D006635 1.4e-257 893.3 714 61.3
AL6G46446 Arabidopsis lyrata HOM05D005348 ORTHO05D006635 1.7e-255 886.3 734 60.9
THA.LOC104813014 Tarenaya hassleriana HOM05D005348 ORTHO05D006635 6.3e-255 884.4 665 63.8
TWI15G0275 Tripterygium wilfordii HOM05D005348 ORTHO05D006635 6.3e-255 884.4 668 65.3
CARHR254650 Cardamine hirsuta HOM05D005348 ORTHO05D006635 1.1e-254 883.6 641 66.1
AL6G46320 Arabidopsis lyrata HOM05D005348 ORTHO05D006635 1.4e-254 883.2 742 60.0
Lsat_1_v5_gn_3_5380 Lactuca sativa HOM05D005348 ORTHO05D006635 9.2e-254 880.6 754 59.9
RcHm_v2.0_Chr4g0410761 Rosa chinensis HOM05D005348 ORTHO05D006635 1.2e-253 880.2 749 60.2
ECA240G2378 Erigeron canadensis HOM05D005348 ORTHO05D006635 2.0e-253 879.4 646 65.3
Lalb_Chr16g0377191 Lupinus albus HOM05D005348 ORTHO05D006635 3.8e-252 875.2 766 58.5
AT4G11720 Arabidopsis thaliana HOM05D005348 ORTHO05D006635 6.6e-252 874.4 660 64.4
Ciclev10019148m.g Citrus clementina HOM05D005348 ORTHO05D006635 3.3e-251 872.1 724 60.6
EL10Ac4g10111 Beta vulgaris HOM05D005348 ORTHO05D006635 1.1e-246 857.1 782 57.0
SHI23548 Sapria himalayana HOM05D005348 ORTHO05D006635 1.6e-245 853.2 713 59.6
BolC9t56320H Brassica oleracea HOM05D005348 ORTHO05D006635 2.0e-245 852.8 660 62.6
FAN13G3003 Fragaria x ananassa HOM05D005348 ORTHO05D006635 7.8e-245 850.9 783 56.8
BraA09t38310Z Brassica rapa HOM05D005348 ORTHO05D006635 3.6e-242 842.0 772 56.2
Ah.06g194640 Amaranthus hybridus HOM05D005348 ORTHO05D006635 1.1e-241 840.5 641 64.3
Sp6g05730 Schrenkiella parvula HOM05D005348 ORTHO05D006635 1.4e-241 840.1 740 58.2
Potri.001G109000 Populus trichocarpa HOM05D005348 ORTHO05D006635 5.2e-241 838.2 576 69.6
Manes.01G066000 Manihot esculenta HOM05D005348 ORTHO05D006635 4.4e-240 835.1 608 67.3
A09p27390 Brassica napus HOM05D005348 ORTHO05D006635 5.8e-240 834.7 636 63.4
Nn6g34225 Nelumbo nucifera HOM05D005348 ORTHO05D006635 1.3e-239 833.6 1029 45.9
C09p34740 Brassica napus HOM05D005348 ORTHO05D006635 1.9e-238 829.7 636 63.2
BcaB01g01675 Brassica carinata HOM05D005348 ORTHO05D006635 4.1e-238 828.6 741 57.2
BcaB05g23815 Brassica carinata HOM05D005348 ORTHO05D006635 1.4e-233 813.5 751 56.6
MELO3C005635.2 Cucumis melo HOM05D005348 ORTHO05D006635 4.4e-232 808.5 590 66.6
Aa31LG9G10660 Aethionema arabicum HOM05D005348 ORTHO05D006635 4.1e-230 802.0 722 57.9
Glyma.15G240000 Glycine max HOM05D005348 ORTHO05D006635 5.4e-230 801.6 568 66.7
Thhalv10028515m.g Eutrema salsugineum HOM05D005348 ORTHO05D006635 2.7e-229 799.3 680 59.9
Glyma.11G026100 Glycine max HOM05D005348 ORTHO05D006635 1.9e-227 793.1 568 66.4
FAN18G1071 Fragaria x ananassa HOM05D005348 ORTHO05D006635 3.6e-226 788.9 636 62.1
Haze_08938 Corylus avellana HOM05D005348 ORTHO05D006635 1.8e-225 786.6 766 55.2
FAN18G0890 Fragaria x ananassa HOM05D005348 ORTHO05D006635 8.9e-225 784.3 743 56.1
Glyma.09G081600 Glycine max HOM05D005348 ORTHO05D006635 1.3e-220 770.4 526 67.9
CsaV3_5G003200 Cucumis sativus L. HOM05D005348 ORTHO05D006635 1.6e-210 736.9 577 64.3
AUR62006548 Chenopodium quinoa HOM05D005348 ORTHO05D006635 6.4e-207 724.9 553 62.4
Atru.chr9.1551 Acer truncatum HOM05D005348 ORTHO05D006635 1.3e-204 717.2 550 65.5
RcHm_v2.0_Chr7g0199071 Rosa chinensis HOM05D005348 ORTHO05D006635 4.3e-203 712.2 735 52.7
AUR62037708 Chenopodium quinoa HOM05D005348 ORTHO05D006635 4.5e-200 702.2 597 60.3
MBI04_g31975_MAGBIO Magnolia biondii HOM05D005348 ORTHO05D006635 9.9e-200 701.0 655 55.3
AUR62000200 Chenopodium quinoa HOM05D005348 ORTHO05D006635 7.1e-198 694.9 565 61.2
Os05g0269500 Oryza sativa ssp. japonica HOM05D005348 ORTHO05D006635 5.1e-196 688.7 653 54.4
VMungo1215G1946 Vigna mungo HOM05D005348 ORTHO05D006635 3.5e-189 666.0 410 74.6
Os09g0525700 Oryza sativa ssp. japonica HOM05D005348 ORTHO05D006635 3.3e-187 659.4 622 53.4
COL.COLO4_05261 Corchorus olitorius HOM05D005348 ORTHO05D006635 9.7e-187 657.9 746 49.5
Gohir.D11G021100 Gossypium hirsutum HOM05D005348 ORTHO05D006635 1.3e-183 647.5 543 60.8
FvH4_5g01650 Fragaria vesca HOM05D005348 ORTHO05D006635 2.3e-180 636.7 565 58.6
Lj8C237T7 Lonicera japonica HOM05D005348 ORTHO05D006635 5.7e-179 632.1 468 66.7
Gohir.A11G021400 Gossypium hirsutum HOM05D005348 ORTHO05D006635 2.0e-176 623.6 476 63.9
Ca_06657_v3 Cicer arietinum L. HOM05D005348 ORTHO05D006635 2.6e-168 596.7 740 48.0
unitig_26.g9696 Utricularia gibba HOM05D005348 ORTHO05D006635 8.5e-159 565.1 717 47.0
Cpa.g.sc29.190 Carica papaya HOM05D005348 ORTHO05D006635 5.2e-140 502.7 353 67.1
Zm00001eb103180 Zea mays HOM05D005348 ORTHO05D006635 5.9e-136 489.2 380 61.8
HPP92_004952 Vanilla planifolia HOM05D005348 ORTHO05D006635 5.0e-127 459.5 771 38.1
Glyma.09G081420 Glycine max HOM05D005348 ORTHO05D006635 7.6e-115 419.1 271 72.3
Peaxi162Scf00714g00422 Petunia axillaris HOM05D005348 ORTHO05D006635 8.4e-106 389.0 246 80.1
PGSC0003DMG400003049 Solanum tuberosum HOM05D005348 ORTHO05D006635 9.0e-100 369.0 204 89.7
AUR62000197 Chenopodium quinoa HOM05D005348 ORTHO05D006635 4.4e-99 366.7 471 47.3
ATR0757G099 Amborella trichopoda HOM05D005348 ORTHO05D006635 1.7e-90 338.2 209 72.2
Prupe.8G039500 Prunus persica HOM05D005348 ORTHO05D006635 3.5e-80 303.9 297 52.9
Hund02677 Selenicereus undatus HOM05D005348 ORTHO05D006635 1.4e-76 292.0 275 57.8
Hund02678 Selenicereus undatus HOM05D005348 ORTHO05D006635 5.7e-70 270.0 320 48.1
VMungo1215G1628 Vigna mungo HOM05D005348 ORTHO05D006635 5.7e-70 270.0 320 47.5
FAN04G3017 Fragaria x ananassa HOM05D005348 ORTHO05D006635 6.7e-63 246.5 241 54.4
FAN04G2632 Fragaria x ananassa HOM05D005348 ORTHO05D006635 1.5e-62 245.4 711 28.8
Prupe.8G039400 Prunus persica HOM05D005348 ORTHO05D006635 6.3e-61 240.0 237 55.7
MSTRG.13824 Avicennia marina HOM05D005348 ORTHO05D006635 3.2e-57 227.6 208 56.7
MBI04_g31964_MAGBIO Magnolia biondii HOM05D005348 ORTHO05D006635 2.6e-43 181.4 188 50.5
Glyma.09G081380 Glycine max HOM05D005348 ORTHO05D006635 3.5e-43 181.0 212 47.6
Glyma.11G176306 Glycine max HOM05D005348 ORTHO05D006635 1.5e-41 175.6 91 82.4
FAN08G1421 Fragaria x ananassa HOM05D005348 ORTHO05D006635 1.9e-41 175.3 133 66.2
Glyma.01G216933 Glycine max HOM05D005348 ORTHO05D006635 2.6e-38 164.9 115 67.8
Mapoly0066s0032 Marchantia polymorpha HOM05D005348 ORTHO05D006635 3.4e-38 164.5 696 22.6
HanXRQChr02g0035411 Helianthus annuus HOM05D005348 ORTHO05D006635 4.5e-35 154.1 123 59.3
Gohir.D11G021150 Gossypium hirsutum HOM05D005348 ORTHO05D006635 7.7e-35 153.3 139 59.0
Cre16.g674852 Chlamydomonas reinhardtii HOM05D005348 ORTHO05D006635 6.5e-34 150.2 519 23.5
Glyma.11G026250 Glycine max HOM05D005348 ORTHO05D006635 8.5e-34 149.8 103 69.9
FAN08G1570 Fragaria x ananassa HOM05D005348 ORTHO05D006635 1.4e-31 142.5 187 47.1
Lj8A237G27 Lonicera japonica HOM05D005348 ORTHO05D006635 2.2e-29 135.2 78 79.5
CBR_g19301 Chara braunii HOM05D005348 ORTHO05D006635 4.9e-29 134.0 535 23.6
Pp3c25_15230 Physcomitrium patens HOM05D005348 ORTHO05D006635 4.9e-29 134.0 264 29.9
Mapoly0035s0066 Marchantia polymorpha HOM05D005348 ORTHO05D006635 8.6e-26 123.2 652 24.2
FAN08G2219 Fragaria x ananassa HOM05D005348 ORTHO05D006635 1.6e-24 119.0 147 51.0
arahy.Tifrunner.gnm1.ann1.AXGL4F Arachis hypogaea HOM05D005348 ORTHO05D006635 7.8e-19 100.1 59 74.6
FAN13G0849 Fragaria x ananassa HOM05D005348 ORTHO05D006635 7.8e-19 100.1 95 57.9
ATR0757G119 Amborella trichopoda HOM05D005348 ORTHO05D006635 6.6e-18 97.1 273 30.0
CsaV3_6G021380 Cucumis sativus L. HOM05D005348 ORTHO05D006635 5.6e-17 94.0 132 38.6
FvH4_5g01630 Fragaria vesca HOM05D005348 ORTHO05D006635 9.2e-12 76.6 41 82.9


User provided reference genes

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