Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen08g028610 Solanum pennellii HOM05D005805 ORTHO05D007226 5.9e-189 664.1 345 100.0
Solyc08g080260.4 Solanum lycopersicum HOM05D005805 ORTHO05D007226 1.7e-172 609.4 352 92.3
PGSC0003DMG400022755 Solanum tuberosum HOM05D005805 ORTHO05D007226 3.2e-166 588.6 318 95.9
CAN.G981.40 Capsicum annuum HOM05D005805 ORTHO05D007226 3.0e-156 555.4 348 85.9
Nitab4.5_0009882g0030 Nicotiana tabacum HOM05D005805 ORTHO05D007226 1.9e-150 536.2 369 79.9
Nitab4.5_0001714g0200 Nicotiana tabacum HOM05D005805 ORTHO05D007226 7.1e-142 507.7 338 79.9
Peaxi162Scf00620g00920 Petunia axillaris HOM05D005805 ORTHO05D007226 2.1e-133 479.6 375 70.9
CSS0012055 Camellia sinensis var. sinensis HOM05D005805 ORTHO05D007226 3.7e-114 415.6 351 66.1
CSS0001301 Camellia sinensis var. sinensis HOM05D005805 ORTHO05D007226 4.8e-114 415.2 354 66.4
Dinv39015 Davidia involucrata HOM05D005805 ORTHO05D007226 9.1e-113 411.0 320 69.4
Actinidia02051 Actinidia chinensis HOM05D005805 ORTHO05D007226 5.0e-111 405.2 350 64.0
Actinidia14511 Actinidia chinensis HOM05D005805 ORTHO05D007226 4.2e-110 402.1 350 64.6
Hma1.2p1_0371F.1_g138200 Hydrangea macrophylla HOM05D005805 ORTHO05D007226 1.5e-107 393.7 342 64.0
Sed0020250 Sechium edule HOM05D005805 ORTHO05D007226 9.7e-107 391.0 355 61.7
vmacro00648 Vaccinium macrocarpon HOM05D005805 ORTHO05D007226 1.3e-106 390.6 336 67.6
Lsat_1_v5_gn_6_12941 Lactuca sativa HOM05D005805 ORTHO05D007226 3.7e-106 389.0 350 61.7
Cc08_g13930 Coffea canephora HOM05D005805 ORTHO05D007226 6.3e-106 388.3 346 59.8
Ca_06662_v3 Cicer arietinum L. HOM05D005805 ORTHO05D007226 8.2e-106 387.9 353 60.3
Migut.A00918 Erythranthe guttata HOM05D005805 ORTHO05D007226 5.3e-105 385.2 390 57.9
Eucgr.D01927 Eucalyptus grandis HOM05D005805 ORTHO05D007226 9.1e-105 384.4 388 58.0
Oeu031590.1 Olea europaea HOM05D005805 ORTHO05D007226 3.5e-104 382.5 369 59.1
VMungo1215G3124 Vigna mungo HOM05D005805 ORTHO05D007226 4.5e-104 382.1 359 60.7
GSVIVG01019866001 Vitis vinifera HOM05D005805 ORTHO05D007226 2.9e-103 379.4 352 61.1
Lalb_Chr16g0379971 Lupinus albus HOM05D005805 ORTHO05D007226 6.5e-103 378.3 353 60.6
Glyma.11G026600 Glycine max HOM05D005805 ORTHO05D007226 1.6e-101 373.6 360 58.9
TAR629G3121 Trochodendron aralioides HOM05D005805 ORTHO05D007226 2.7e-101 372.9 351 60.7
MELO3C005626.2 Cucumis melo HOM05D005805 ORTHO05D007226 8.8e-100 367.9 341 61.6
TAR375G0540 Trochodendron aralioides HOM05D005805 ORTHO05D007226 2.6e-99 366.3 351 58.4
Glyma.01G215800 Glycine max HOM05D005805 ORTHO05D007226 3.3e-99 365.9 360 58.3
Phvul.002G153800 Phaseolus vulgaris HOM05D005805 ORTHO05D007226 7.5e-99 364.8 324 63.0
HanXRQChr02g0048701 Helianthus annuus HOM05D005805 ORTHO05D007226 9.7e-99 364.4 352 60.2
QL12p017075 Quercus lobata HOM05D005805 ORTHO05D007226 1.3e-98 364.0 449 51.0
Nn1g01331 Nelumbo nucifera HOM05D005805 ORTHO05D007226 1.4e-97 360.5 351 59.3
ClCG01G003160 Citrullus lanatus HOM05D005805 ORTHO05D007226 1.2e-96 357.5 397 54.4
Lalb_Chr05g0214771 Lupinus albus HOM05D005805 ORTHO05D007226 5.9e-96 355.1 353 58.9
Ciclev10020090m.g Citrus clementina HOM05D005805 ORTHO05D007226 2.2e-95 353.2 465 49.9
Duzib068G1011 Durio zibethinus HOM05D005805 ORTHO05D007226 2.5e-94 349.7 350 57.4
CiPaw.11G141700 Carya illinoinensis HOM05D005805 ORTHO05D007226 5.5e-94 348.6 451 49.0
Psat2g181520 Pisum sativum HOM05D005805 ORTHO05D007226 7.2e-94 348.2 439 48.3
PGR031G2899 Punica granatum HOM05D005805 ORTHO05D007226 7.2e-94 348.2 433 50.1
Lj2A197T60 Lonicera japonica HOM05D005805 ORTHO05D007226 9.4e-94 347.8 348 58.0
TPR.G6662 Trifolium pratense HOM05D005805 ORTHO05D007226 1.0e-92 344.4 442 48.2
Medtr5g010950 Medicago truncatula HOM05D005805 ORTHO05D007226 1.5e-91 340.5 359 56.0
arahy.Tifrunner.gnm1.ann1.8FZ8QS Arachis hypogaea HOM05D005805 ORTHO05D007226 5.7e-91 338.6 421 50.1
CsaV3_5G003280 Cucumis sativus L. HOM05D005805 ORTHO05D007226 1.6e-88 330.5 279 62.7
CiPaw.12G099000 Carya illinoinensis HOM05D005805 ORTHO05D007226 2.7e-88 329.7 467 46.5
ECA233G3280 Erigeron canadensis HOM05D005805 ORTHO05D007226 7.7e-88 328.2 436 46.8
Potri.001G111100 Populus trichocarpa HOM05D005805 ORTHO05D007226 1.0e-87 327.8 469 45.6
Cfa012095 Carpinus fangiana HOM05D005805 ORTHO05D007226 8.5e-87 324.7 484 45.0
MD04G1068600 Malus domestica HOM05D005805 ORTHO05D007226 8.5e-87 324.7 498 43.4
Oeu001898.3 Olea europaea HOM05D005805 ORTHO05D007226 2.5e-86 323.2 358 55.3
Duzib084G0260 Durio zibethinus HOM05D005805 ORTHO05D007226 5.5e-86 322.0 442 46.6
Gorai.003G162800 Gossypium raimondii HOM05D005805 ORTHO05D007226 5.5e-86 322.0 460 45.2
Lj2g0007037 Lotus japonicus HOM05D005805 ORTHO05D007226 5.5e-86 322.0 485 43.9
Thecc.03G270600 Theobroma cacao HOM05D005805 ORTHO05D007226 5.5e-86 322.0 437 46.9
Gohir.D03G155100 Gossypium hirsutum HOM05D005805 ORTHO05D007226 7.2e-86 321.6 460 45.2
Duzib205G1286 Durio zibethinus HOM05D005805 ORTHO05D007226 1.2e-85 320.9 436 46.1
Gohir.A03G015238 Gossypium hirsutum HOM05D005805 ORTHO05D007226 6.1e-85 318.5 451 45.5
HanXRQChr07g0188541 Helianthus annuus HOM05D005805 ORTHO05D007226 6.1e-85 318.5 328 56.1
THA.LOC104806368 Tarenaya hassleriana HOM05D005805 ORTHO05D007226 6.1e-85 318.5 423 48.9
Aa31LG9G10640 Aethionema arabicum HOM05D005805 ORTHO05D007226 8.0e-85 318.2 407 49.6
Prupe.5G089600 Prunus persica HOM05D005805 ORTHO05D007226 1.8e-84 317.0 513 42.9
Potri.003G120900 Populus trichocarpa HOM05D005805 ORTHO05D007226 2.3e-84 316.6 488 43.6
THA.LOC104814292 Tarenaya hassleriana HOM05D005805 ORTHO05D007226 4.0e-84 315.8 412 49.0
MD06G1071900 Malus domestica HOM05D005805 ORTHO05D007226 6.8e-84 315.1 500 43.2
unitig_8.g3899 Utricularia gibba HOM05D005805 ORTHO05D007226 1.2e-83 314.3 345 55.1
Aqoxy7G00467 Aquilegia oxysepala HOM05D005805 ORTHO05D007226 2.6e-83 313.2 308 57.5
CANSAT21G1670 Cannabis sativa HOM05D005805 ORTHO05D007226 2.6e-83 313.2 527 40.0
TWI81G0996 Tripterygium wilfordii HOM05D005805 ORTHO05D007226 3.4e-83 312.8 468 45.1
BraA09t38298Z Brassica rapa HOM05D005805 ORTHO05D007226 5.7e-83 312.0 409 49.4
Dinv37696 Davidia involucrata HOM05D005805 ORTHO05D007226 9.8e-83 311.2 284 63.0
Thhalv10028709m.g Eutrema salsugineum HOM05D005805 ORTHO05D007226 9.8e-83 311.2 407 49.1
A02p25990 Brassica napus HOM05D005805 ORTHO05D007226 1.7e-82 310.5 377 50.9
BraA02t07597Z Brassica rapa HOM05D005805 ORTHO05D007226 1.7e-82 310.5 377 50.9
BolC9t56310H Brassica oleracea HOM05D005805 ORTHO05D007226 2.2e-82 310.1 403 49.6
FAN04G0223 Fragaria x ananassa HOM05D005805 ORTHO05D007226 4.9e-82 308.9 490 42.0
Sed0020925 Sechium edule HOM05D005805 ORTHO05D007226 6.3e-82 308.5 283 60.8
Sc01g0008800 Simmondsia chinensis HOM05D005805 ORTHO05D007226 6.3e-82 308.5 446 46.6
FAN13G0947 Fragaria x ananassa HOM05D005805 ORTHO05D007226 8.3e-82 308.1 481 41.4
FvH4_5g01420 Fragaria vesca HOM05D005805 ORTHO05D007226 1.4e-81 307.4 489 41.1
FAN08G1094 Fragaria x ananassa HOM05D005805 ORTHO05D007226 1.2e-80 304.3 499 40.3
FAN18G3929 Fragaria x ananassa HOM05D005805 ORTHO05D007226 1.2e-80 304.3 489 40.9
Sabra01G0084700 Salix brachista HOM05D005805 ORTHO05D007226 2.0e-80 303.5 491 41.8
Gorai.004G207600 Gossypium raimondii HOM05D005805 ORTHO05D007226 5.9e-80 302.0 400 47.5
Rhsim08G0109800 Rhododendron simsii HOM05D000003 ORTHO05D000004 1.0e-79 301.2 328 55.8
MBI04_g40844_MAGBIO Magnolia biondii HOM05D005805 ORTHO05D007226 2.9e-79 299.7 351 52.4
C09p34650 Brassica napus HOM05D005805 ORTHO05D007226 5.0e-79 298.9 428 46.5
BcaB05g23807 Brassica carinata HOM05D005805 ORTHO05D007226 1.5e-78 297.4 409 46.7
A09p27320 Brassica napus HOM05D005805 ORTHO05D007226 1.2e-77 294.3 434 45.9
Manes.01G068001 Manihot esculenta HOM05D005805 ORTHO05D007226 1.0e-76 291.2 428 44.6
arahy.Tifrunner.gnm1.ann1.J6ALFQ Arachis hypogaea HOM05D005805 ORTHO05D007226 8.9e-76 288.1 493 40.8
RcHm_v2.0_Chr7g0199441 Rosa chinensis HOM05D005805 ORTHO05D007226 5.7e-75 285.4 512 40.0
TWI60G0251 Tripterygium wilfordii HOM05D005805 ORTHO05D007226 1.4e-73 280.8 481 40.5
AL6G46500 Arabidopsis lyrata HOM05D005805 ORTHO05D007226 3.2e-73 279.6 439 45.3
Carub.0006s3090 Capsella rubella HOM05D005805 ORTHO05D007226 3.2e-73 279.6 436 43.8
EL10Ac5g12722 Beta vulgaris HOM05D005805 ORTHO05D007226 4.1e-73 279.3 456 42.5
ATR0757G009 Amborella trichopoda HOM05D005805 ORTHO05D007226 5.4e-73 278.9 311 53.7
Gohir.A08G178400 Gossypium hirsutum HOM05D005805 ORTHO05D007226 9.2e-73 278.1 474 40.9
Sp6g05660 Schrenkiella parvula HOM05D005805 ORTHO05D007226 2.0e-72 276.9 401 46.1
CARHR254520 Cardamine hirsuta HOM05D005805 ORTHO05D007226 7.8e-72 275.0 410 45.6
HPP92_020989 Vanilla planifolia HOM05D005805 ORTHO05D007226 1.1e-70 271.2 427 42.9
Haze_08957 Corylus avellana HOM05D005805 ORTHO05D007226 3.1e-68 263.1 497 40.6
AUR62017300 Chenopodium quinoa HOM05D005805 ORTHO05D007226 5.2e-68 262.3 446 41.9
AUR62010661 Chenopodium quinoa HOM05D005805 ORTHO05D007226 1.2e-67 261.2 449 42.8
BcaC03g16328 Brassica carinata HOM05D005805 ORTHO05D007226 2.9e-66 256.5 311 50.8
Os03g0667700 Oryza sativa ssp. japonica HOM05D005805 ORTHO05D007226 1.2e-64 251.1 372 43.8
CDE11G0359 Ceratophyllum demersum HOM05D005805 ORTHO05D007226 2.7e-64 250.0 494 36.2
AT4G11790 Arabidopsis thaliana HOM05D005805 ORTHO05D007226 1.3e-63 247.7 455 40.4
SalBow6G0943 Salvia bowleyana HOM05D005805 ORTHO05D007226 8.6e-63 245.0 377 44.3
Zm00001eb073520 Zea mays HOM05D005805 ORTHO05D007226 8.6e-63 245.0 447 39.8
Ah.12g057730 Amaranthus hybridus HOM05D005805 ORTHO05D007226 3.6e-61 239.6 473 39.1
Hund28361 Selenicereus undatus HOM05D005805 ORTHO05D007226 4.7e-61 239.2 498 35.9
Hund28365 Selenicereus undatus HOM05D005805 ORTHO05D007226 4.7e-61 239.2 498 35.9
PSO478G0076 Papaver somniferum HOM05D005805 ORTHO05D007226 2.3e-60 236.9 583 32.9
BcaB01g01678 Brassica carinata HOM05D005805 ORTHO05D007226 4.4e-59 232.6 358 45.0
Manes.02G028100 Manihot esculenta HOM05D005805 ORTHO05D007226 1.3e-58 231.1 176 69.9
PSO782G3262 Papaver somniferum HOM05D005805 ORTHO05D007226 2.2e-58 230.3 585 32.3
C02p41470 Brassica napus HOM05D005805 ORTHO05D007226 3.5e-56 223.0 314 47.1
COL.COLO4_05276 Corchorus olitorius HOM05D005805 ORTHO05D007226 1.7e-55 220.7 138 78.3
TAR374G1484 Trochodendron aralioides HOM05D005805 ORTHO05D007226 7.6e-51 205.3 149 71.8
vmacro10803 Vaccinium macrocarpon HOM05D005805 ORTHO05D007226 3.5e-48 196.4 315 47.6
Gohir.D08G196900 Gossypium hirsutum HOM05D005805 ORTHO05D007226 2.1e-45 187.2 145 66.9
Cpa.g.sc29.9 Carica papaya HOM05D005805 ORTHO05D007226 1.0e-39 168.3 364 37.9
Ah.02g116420 Amaranthus hybridus HOM05D005805 ORTHO05D007226 7.3e-38 162.2 442 34.4
BolC2t10164H Brassica oleracea HOM05D005805 ORTHO05D007226 5.3e-36 156.0 108 72.2
Atru.chr9.1535 Acer truncatum HOM05D005805 ORTHO05D007226 4.9e-34 149.4 214 46.7
AagrBONN_evm.TU.Sc2ySwM_344.4489 Anthoceros agrestis HOM05D005805 ORTHO05D007226 3.1e-28 130.2 358 29.9
DCAR_006764 Daucus carota HOM05D005805 ORTHO05D007226 9.0e-28 128.6 147 51.7
COL.COLO4_05274 Corchorus olitorius HOM05D005805 ORTHO05D007226 4.8e-21 106.3 71 73.2
Hma1.2p1_0002F.1_g002590 Hydrangea macrophylla HOM05D005805 ORTHO05D007226 7.6e-19 99.0 71 69.0
SGA_v2.0_scaffold60G20821 Striga asiatica HOM05D011763 ORTHO05D014257 1.9e-17 94.4 327 31.2
SGA_v2.0_scaffold60G21020 Striga asiatica HOM05D011763 ORTHO05D014257 5.1e-15 86.3 151 39.1
CBR_g49019 Chara braunii HOM05D005805 ORTHO05D007226 5.3e-12 76.3 74 45.9
MCO13G284 Micromonas commoda HOM05D005805 ORTHO05D007226 3.3e-06 57.0 330 22.4


User provided reference genes

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