Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen08g028360 Solanum pennellii HOM05D008075 ORTHO05D010208 0.0e+00 1351.3 688 100.0
Solyc08g080000.3 Solanum lycopersicum HOM05D008075 ORTHO05D010208 0.0e+00 1323.1 688 97.7
PGSC0003DMG400022727 Solanum tuberosum HOM05D008075 ORTHO05D010208 0.0e+00 1258.8 707 92.1
Nitab4.5_0005586g0040 Nicotiana tabacum HOM05D008075 ORTHO05D010208 2.4e-282 975.3 767 71.1
CAN.G630.6 Capsicum annuum HOM05D008075 ORTHO05D010208 5.5e-279 964.1 635 80.5
Nitab4.5_0000947g0070 Nicotiana tabacum HOM05D008075 ORTHO05D010208 3.6e-270 934.9 760 69.6
Peaxi162Scf00658g00065 Petunia axillaris HOM05D008075 ORTHO05D010208 1.8e-245 852.8 750 65.1
Dinv08171 Davidia involucrata HOM05D008075 ORTHO05D010208 4.9e-118 429.5 821 39.1
Cc02_g33950 Coffea canephora HOM05D008075 ORTHO05D010208 9.6e-114 415.2 792 40.8
Oeu011019.1 Olea europaea HOM05D002427 ORTHO05D002818 1.5e-111 407.9 688 40.7
SGA_v2.0_scaffold54G19596 Striga asiatica HOM05D008075 ORTHO05D010208 1.8e-107 394.4 691 41.8
CSS0037312 Camellia sinensis var. sinensis HOM05D008075 ORTHO05D010208 2.0e-95 354.4 722 37.8
GSVIVG01022404001 Vitis vinifera HOM05D008075 ORTHO05D010208 1.7e-94 351.3 766 36.3
Rhsim08G0001000 Rhododendron simsii HOM05D008075 ORTHO05D010208 1.3e-91 341.7 790 36.2
SalBow1G7185 Salvia bowleyana HOM05D008075 ORTHO05D010208 5.7e-90 336.3 732 37.0
Migut.H00807 Erythranthe guttata HOM05D008075 ORTHO05D010208 1.0e-86 325.5 692 37.7
CiPaw.03G254600 Carya illinoinensis HOM05D008075 ORTHO05D010208 1.3e-78 298.5 552 40.0
TAR376G0152 Trochodendron aralioides HOM05D008075 ORTHO05D010208 2.2e-78 297.7 572 40.2
QL10p040186 Quercus lobata HOM05D008075 ORTHO05D010208 1.3e-73 282.0 405 45.7
Potri.004G140000 Populus trichocarpa HOM05D008075 ORTHO05D010208 8.2e-73 279.3 801 33.1
Ciclev10024878m.g Citrus clementina HOM05D008075 ORTHO05D010208 1.0e-70 272.3 520 40.0
TWI75G0788 Tripterygium wilfordii HOM05D008075 ORTHO05D010208 1.0e-70 272.3 789 32.6
Sabra04G0092100 Salix brachista HOM05D008075 ORTHO05D010208 1.1e-69 268.9 810 31.1
Nn1g08564 Nelumbo nucifera HOM05D008075 ORTHO05D010208 2.6e-66 257.7 322 49.7
MBI03_g11141_MAGBIO Magnolia biondii HOM05D008075 ORTHO05D010208 2.8e-65 254.2 258 56.2
Glyma.05G197100 Glycine max HOM05D008075 ORTHO05D010208 2.4e-64 251.1 218 61.5
Aqoxy2G00609 Aquilegia oxysepala HOM05D008075 ORTHO05D010208 2.0e-63 248.1 705 32.9
ECA233G5565 Erigeron canadensis HOM05D008075 ORTHO05D010208 2.0e-63 248.1 715 33.1
Manes.12G084200 Manihot esculenta HOM05D008075 ORTHO05D010208 1.0e-62 245.7 766 31.5
Medtr8g095160 Medicago truncatula HOM05D008075 ORTHO05D010208 4.2e-61 240.4 216 58.8
HPP92_002184 Vanilla planifolia HOM05D008075 ORTHO05D010208 2.7e-60 237.7 213 57.3
VMungo0251G2353 Vigna mungo HOM05D008075 ORTHO05D010208 2.7e-60 237.7 218 59.2
Glyma.08G004500 Glycine max HOM05D008075 ORTHO05D010208 1.8e-59 235.0 842 29.0
PSO170G3563 Papaver somniferum HOM05D008075 ORTHO05D010208 1.8e-59 235.0 397 42.8
TPR.G33422 Trifolium pratense HOM05D008075 ORTHO05D010208 4.0e-59 233.8 214 57.0
Lj4g0013275 Lotus japonicus HOM05D008075 ORTHO05D010208 6.8e-59 233.0 215 57.2
THA.LOC104819473 Tarenaya hassleriana HOM05D008075 ORTHO05D010208 2.6e-58 231.1 399 42.1
PSO782G2813 Papaver somniferum HOM05D008075 ORTHO05D010208 3.4e-58 230.7 735 33.2
HanXRQChr15g0468991 Helianthus annuus HOM05D008075 ORTHO05D010208 3.7e-57 227.3 216 57.4
Nn5g27987 Nelumbo nucifera HOM05D008075 ORTHO05D010208 3.7e-57 227.3 278 50.4
Phvul.002G277500 Phaseolus vulgaris HOM05D008075 ORTHO05D010208 3.7e-57 227.3 212 56.6
arahy.Tifrunner.gnm1.ann1.F3CBX5 Arachis hypogaea HOM05D008075 ORTHO05D010208 1.8e-56 224.9 270 49.6
Lsat_1_v5_gn_5_69300 Lactuca sativa HOM05D008075 ORTHO05D010208 1.8e-56 224.9 236 53.4
Sc09g0004370 Simmondsia chinensis HOM05D008075 ORTHO05D010208 2.0e-55 221.5 222 55.9
Os03g0703300 Oryza sativa ssp. japonica HOM05D008075 ORTHO05D010208 7.7e-55 219.5 217 55.8
Psat7g041720 Pisum sativum HOM05D008075 ORTHO05D010208 8.5e-54 216.1 781 28.7
arahy.Tifrunner.gnm1.ann1.BIR6X5 Arachis hypogaea HOM05D008075 ORTHO05D010208 7.2e-53 213.0 287 46.3
Zm00001eb054280 Zea mays HOM05D008075 ORTHO05D010208 1.6e-52 211.8 254 50.0
ATR0171G010 Amborella trichopoda HOM05D008075 ORTHO05D010208 2.1e-52 211.5 215 55.3
Ca_17596_v3 Cicer arietinum L. HOM05D000484 ORTHO05D010208 3.6e-52 210.7 198 56.1
Ah.06g191710 Amaranthus hybridus HOM05D008075 ORTHO05D010208 2.2e-49 201.4 800 30.0
AUR62039042 Chenopodium quinoa HOM05D008075 ORTHO05D010208 2.8e-49 201.1 806 29.9
Hund06889 Selenicereus undatus HOM05D008075 ORTHO05D010208 1.4e-48 198.7 334 41.6
EL10Ac4g08956 Beta vulgaris HOM05D008075 ORTHO05D010208 1.8e-48 198.4 746 30.8
Lalb_Chr12g0202841 Lupinus albus HOM05D008075 ORTHO05D010208 3.1e-48 197.6 492 32.7
MSTRG.23496 Avicennia marina HOM05D008075 ORTHO05D010208 8.9e-43 179.5 572 31.3
AUR62004796 Chenopodium quinoa HOM05D008075 ORTHO05D010208 6.3e-41 173.3 816 29.4
SMO266G0073 Selaginella moellendorffii HOM05D008075 ORTHO05D010208 4.7e-36 157.1 180 48.9
SEGI_31365 Sequoiadendron giganteum HOM05D008075 ORTHO05D010208 3.1e-35 154.5 214 43.0
Mapoly0089s0038 Marchantia polymorpha HOM05D008075 ORTHO05D010208 1.3e-30 139.0 162 43.2
Nn5g27981 Nelumbo nucifera HOM05D008075 ORTHO05D010208 8.3e-25 119.8 100 63.0
Pp3c6_3110 Physcomitrium patens HOM05D008075 ORTHO05D010208 9.2e-24 116.3 231 34.6
Pp3c6_900 Physcomitrium patens HOM05D008075 ORTHO05D010208 2.7e-23 114.8 273 33.0
Pp3c6_920 Physcomitrium patens HOM05D008075 ORTHO05D010208 2.7e-23 114.8 273 33.0
Pp3c16_21630 Physcomitrium patens HOM05D008075 ORTHO05D010208 7.8e-23 113.2 276 34.4
VMungo0251G2339 Vigna mungo HOM05D008075 ORTHO05D010208 2.4e-16 91.7 215 35.8
CBR_g31168 Chara braunii HOM05D008075 ORTHO05D010208 7.3e-13 80.1 142 34.5
AagrBONN_evm.TU.Sc2ySwM_362.1056 Anthoceros agrestis HOM05D008075 ORTHO05D010208 1.6e-12 79.0 139 34.5
CBR_g10951 Chara braunii HOM05D008075 ORTHO05D010208 5.8e-10 70.5 161 31.1
HanXRQChr07g0199571 Helianthus annuus HOM05D008075 ORTHO05D010208 1.4e-08 65.9 47 63.8
Nn5g28099 Nelumbo nucifera HOM05D004492 ORTHO05D005602 2.1e-07 62.0 90 41.1
HanXRQChr10g0307451 Helianthus annuus HOM05D008075 ORTHO05D010208 1.0e-06 59.7 48 58.3


User provided reference genes

Program Settings