Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen08g028180 Solanum pennellii HOM05D004703 ORTHO05D005801 1.1e-173 613.2 308 100.0
Solyc08g079820.3 Solanum lycopersicum HOM05D004703 ORTHO05D005801 6.5e-171 604.0 308 98.4
Nitab4.5_0012494g0020 Nicotiana tabacum HOM05D004703 ORTHO05D005801 3.0e-152 542.0 308 89.6
Nitab4.5_0005167g0040 Nicotiana tabacum HOM05D004703 ORTHO05D005801 1.0e-147 526.9 306 86.9
Peaxi162Scf00620g00231 Petunia axillaris HOM05D004703 ORTHO05D005801 8.6e-147 523.9 332 81.3
PGSC0003DMG400003941 Solanum tuberosum HOM05D004703 ORTHO05D005801 3.6e-145 518.5 266 97.7
Cc08_g13610 Coffea canephora HOM05D004703 ORTHO05D005801 4.6e-124 448.4 274 82.8
TAR629G2760 Trochodendron aralioides HOM05D004703 ORTHO05D005801 6.2e-121 438.0 267 81.3
CAN.G630.24 Capsicum annuum HOM05D004703 ORTHO05D005801 1.4e-120 436.8 230 94.8
Dinv37721 Davidia involucrata HOM05D004703 ORTHO05D005801 1.8e-120 436.4 266 81.2
DCAR_006785 Daucus carota HOM05D004703 ORTHO05D005801 6.8e-120 434.5 266 80.5
Migut.A00879 Erythranthe guttata HOM05D004703 ORTHO05D005801 1.2e-119 433.7 294 74.5
PGR042G1634 Punica granatum HOM05D004703 ORTHO05D005801 9.9e-119 430.6 298 74.5
QL12p016126 Quercus lobata HOM05D004703 ORTHO05D005801 1.1e-117 427.2 276 76.4
QL12p016291 Quercus lobata HOM05D004703 ORTHO05D005801 1.1e-117 427.2 276 76.4
COL.COLO4_23815 Corchorus olitorius HOM05D004703 ORTHO05D005801 1.4e-117 426.8 270 77.8
Oeu001909.1 Olea europaea HOM05D004703 ORTHO05D005801 1.4e-117 426.8 263 79.8
CSS0042147 Camellia sinensis var. sinensis HOM05D004703 ORTHO05D005801 3.2e-117 425.6 272 77.9
Actinidia14493 Actinidia chinensis HOM05D004703 ORTHO05D005801 5.4e-117 424.9 265 78.1
CANSAT21G0478 Cannabis sativa HOM05D004703 ORTHO05D005801 5.4e-117 424.9 295 74.2
Manes.01G070700 Manihot esculenta HOM05D004703 ORTHO05D005801 9.2e-117 424.1 276 76.1
Atru.chr9.1491 Acer truncatum HOM05D004703 ORTHO05D005801 2.7e-116 422.5 268 78.4
SGA_v2.0_scaffold37G14871 Striga asiatica HOM05D004703 ORTHO05D005801 3.5e-116 422.2 295 73.2
Hma1.2p1_0138F.1_g062820 Hydrangea macrophylla HOM05D004703 ORTHO05D005801 4.6e-116 421.8 254 81.9
Potri.003G118300 Populus trichocarpa HOM05D004703 ORTHO05D005801 7.8e-116 421.0 270 76.3
Sed0028019 Sechium edule HOM05D004703 ORTHO05D005801 1.3e-115 420.2 291 74.2
GSVIVG01019903001 Vitis vinifera HOM05D004703 ORTHO05D005801 8.7e-115 417.5 260 78.8
Lsat_1_v5_gn_6_10661 Lactuca sativa HOM05D004703 ORTHO05D005801 1.9e-114 416.4 293 70.6
CiPaw.11G143800 Carya illinoinensis HOM05D004703 ORTHO05D005801 3.3e-114 415.6 254 79.5
Ciclev10021310m.g Citrus clementina HOM05D004703 ORTHO05D005801 3.3e-114 415.6 293 73.7
Duzib084G1157 Durio zibethinus HOM05D004703 ORTHO05D005801 3.6e-113 412.1 270 74.4
CsaV3_5G003450 Cucumis sativus L. HOM05D004703 ORTHO05D005801 4.7e-113 411.8 289 73.0
Prupe.5G084800 Prunus persica HOM05D004703 ORTHO05D005801 4.7e-113 411.8 284 73.6
Thecc.03G266100 Theobroma cacao HOM05D004703 ORTHO05D005801 1.4e-112 410.2 270 74.8
Haze_09002 Corylus avellana HOM05D004703 ORTHO05D005801 2.4e-112 409.5 262 77.5
Gohir.D09G188100 Gossypium hirsutum HOM05D004703 ORTHO05D005801 2.4e-112 409.5 270 75.2
Ca_12294_v3 Cicer arietinum L. HOM05D004703 ORTHO05D005801 3.1e-112 409.1 279 73.5
ECA233G5834 Erigeron canadensis HOM05D004703 ORTHO05D005801 3.1e-112 409.1 268 76.1
AUR62017343 Chenopodium quinoa HOM05D004703 ORTHO05D005801 4.0e-112 408.7 270 74.4
Gohir.A09G193900 Gossypium hirsutum HOM05D004703 ORTHO05D005801 5.2e-112 408.3 270 74.4
Gorai.006G210900 Gossypium raimondii HOM05D004703 ORTHO05D005801 5.2e-112 408.3 270 74.8
Sabra03G0082300 Salix brachista HOM05D004703 ORTHO05D005801 6.9e-112 407.9 286 71.7
FvH4_5g01080 Fragaria vesca HOM05D004703 ORTHO05D005801 2.0e-111 406.4 288 71.2
VMungo0251G1252 Vigna mungo HOM05D004703 ORTHO05D005801 2.0e-111 406.4 291 70.4
Eucgr.E00504 Eucalyptus grandis HOM05D004703 ORTHO05D005801 3.4e-111 405.6 262 75.2
RcHm_v2.0_Chr7g0200241 Rosa chinensis HOM05D004703 ORTHO05D005801 5.8e-111 404.8 272 73.2
AUR62010550 Chenopodium quinoa HOM05D004703 ORTHO05D005801 7.6e-111 404.4 267 74.9
Glyma.05G054900 Glycine max HOM05D004703 ORTHO05D005801 9.9e-111 404.1 286 71.7
Lj4g0003091 Lotus japonicus HOM05D004703 ORTHO05D005801 9.9e-111 404.1 270 74.1
Lalb_Chr05g0225211 Lupinus albus HOM05D004703 ORTHO05D005801 1.7e-110 403.3 271 74.2
MD04G1073000 Malus domestica HOM05D004703 ORTHO05D005801 1.7e-110 403.3 285 71.6
Glyma.05G054800 Glycine max HOM05D004703 ORTHO05D005801 4.9e-110 401.7 286 71.0
Carub.0006s3108 Capsella rubella HOM05D004703 ORTHO05D005801 8.4e-110 401.0 267 70.8
TWI15G0205 Tripterygium wilfordii HOM05D004703 ORTHO05D005801 8.4e-110 401.0 265 74.7
EL10Ac5g12672 Beta vulgaris HOM05D004703 ORTHO05D005801 1.9e-109 399.8 293 68.3
AL6G46750 Arabidopsis lyrata HOM05D004703 ORTHO05D005801 2.4e-109 399.4 268 72.4
Thhalv10028825m.g Eutrema salsugineum HOM05D004703 ORTHO05D005801 2.4e-109 399.4 301 66.1
Hund14696 Selenicereus undatus HOM05D004703 ORTHO05D005801 4.2e-109 398.7 260 74.6
AT4G11980 Arabidopsis thaliana HOM05D004703 ORTHO05D005801 7.1e-109 397.9 292 67.5
TPR.G37619 Trifolium pratense HOM05D004703 ORTHO05D005801 9.3e-109 397.5 297 69.0
Medtr4g101830 Medicago truncatula HOM05D004703 ORTHO05D005801 2.1e-108 396.4 280 71.4
Phvul.003G216900 Phaseolus vulgaris HOM05D004703 ORTHO05D005801 2.7e-108 396.0 286 71.0
Ah.12g053460 Amaranthus hybridus HOM05D004703 ORTHO05D005801 7.8e-108 394.4 296 68.6
Ah.12g057950 Amaranthus hybridus HOM05D004703 ORTHO05D005801 7.8e-108 394.4 296 68.6
FAN18G3460 Fragaria x ananassa HOM05D004703 ORTHO05D005801 1.3e-107 393.7 311 65.9
unitig_22.g5479 Utricularia gibba HOM05D004703 ORTHO05D005801 1.7e-107 393.3 293 70.0
CDE04G3458 Ceratophyllum demersum HOM05D004703 ORTHO05D005801 2.3e-107 392.9 246 76.0
PSO782G3959 Papaver somniferum HOM05D004703 ORTHO05D005801 3.9e-107 392.1 309 65.7
CARHR254310 Cardamine hirsuta HOM05D004703 ORTHO05D005801 8.7e-107 391.0 267 71.2
PSO478G3008 Papaver somniferum HOM05D004703 ORTHO05D005801 8.7e-107 391.0 304 66.1
CSS0006775 Camellia sinensis var. sinensis HOM05D004703 ORTHO05D005801 1.1e-106 390.6 230 83.5
FAN13G0401 Fragaria x ananassa HOM05D004703 ORTHO05D005801 1.5e-106 390.2 311 65.3
Lj2A203G54 Lonicera japonica HOM05D004703 ORTHO05D005801 1.5e-106 390.2 242 81.8
RcHm_v2.0_Chr6g0265101 Rosa chinensis HOM05D004703 ORTHO05D005801 2.5e-106 389.4 272 70.2
THA.LOC104806355 Tarenaya hassleriana HOM05D004703 ORTHO05D005801 2.5e-106 389.4 273 72.2
Aqoxy7G00537 Aquilegia oxysepala HOM05D004703 ORTHO05D005801 3.3e-106 389.0 261 74.3
RcHm_v2.0_Chr6g0265181 Rosa chinensis HOM05D004703 ORTHO05D005801 4.3e-106 388.7 272 70.2
HanXRQChr07g0186971 Helianthus annuus HOM05D004703 ORTHO05D005801 5.6e-106 388.3 323 63.8
Ah.02g116260 Amaranthus hybridus HOM05D004703 ORTHO05D005801 1.6e-105 386.7 258 72.5
ClCG01G003390 Citrullus lanatus HOM05D004703 ORTHO05D005801 1.1e-104 384.0 310 67.4
BcaB01g01695 Brassica carinata HOM05D004703 ORTHO05D005801 4.0e-104 382.1 271 71.2
MBI04_g28556_MAGBIO Magnolia biondii HOM05D004703 ORTHO05D005801 4.0e-104 382.1 273 71.4
PSO478G3534 Papaver somniferum HOM05D004703 ORTHO05D005801 4.0e-104 382.1 245 75.9
Rhsim08G0184400 Rhododendron simsii HOM05D004703 ORTHO05D005801 9.0e-104 380.9 271 73.1
BcaC04g21182 Brassica carinata HOM05D004703 ORTHO05D005801 1.2e-103 380.6 269 69.9
C09p34490 Brassica napus HOM05D004703 ORTHO05D005801 1.2e-103 380.6 269 69.9
BolC9t56293H Brassica oleracea HOM05D004703 ORTHO05D005801 1.5e-103 380.2 270 69.6
Os06g0129700 Oryza sativa ssp. japonica HOM05D004703 ORTHO05D005801 2.6e-103 379.4 245 73.5
arahy.Tifrunner.gnm1.ann1.RRY62Q Arachis hypogaea HOM05D004703 ORTHO05D005801 1.7e-102 376.7 229 79.9
VMungo0251G1928 Vigna mungo HOM05D004703 ORTHO05D005801 2.4e-101 372.9 316 61.7
MELO3C005608.2 Cucumis melo HOM05D004703 ORTHO05D005801 4.2e-101 372.1 393 54.2
Psat4g069480 Pisum sativum HOM05D004703 ORTHO05D005801 4.2e-101 372.1 230 78.7
HPP92_020651 Vanilla planifolia HOM05D004703 ORTHO05D005801 2.7e-100 369.4 261 69.0
A09p27170 Brassica napus HOM05D004703 ORTHO05D005801 6.4e-94 348.2 261 67.4
CBR_g30593 Chara braunii HOM05D004703 ORTHO05D005801 4.2e-93 345.5 250 65.6
Aa31LG9G10490 Aethionema arabicum HOM05D004703 ORTHO05D005801 2.1e-92 343.2 287 62.0
Cpa.g.sc29.48 Carica papaya HOM05D004703 ORTHO05D005801 1.1e-90 337.4 289 63.3
SalBow6G2643 Salvia bowleyana HOM05D004703 ORTHO05D005801 2.4e-88 329.7 195 81.0
Mapoly0093s0020 Marchantia polymorpha HOM05D004703 ORTHO05D005801 5.3e-88 328.6 249 63.1
FAN08G2483 Fragaria x ananassa HOM05D004703 ORTHO05D005801 1.0e-86 324.3 253 66.4
arahy.Tifrunner.gnm1.ann1.TVWC12 Arachis hypogaea HOM05D004703 ORTHO05D005801 8.4e-86 321.2 236 69.1
Pp3c15_11750 Physcomitrium patens HOM05D004703 ORTHO05D005801 8.4e-86 321.2 251 62.9
vmacro19246 Vaccinium macrocarpon HOM05D004703 ORTHO05D005801 8.5e-78 294.7 209 74.6
SMO140G0070 Selaginella moellendorffii HOM05D004703 ORTHO05D005801 1.0e-75 287.7 196 67.9
Nn1g00505 Nelumbo nucifera HOM05D004703 ORTHO05D005801 2.5e-74 283.1 209 70.3
Sc07g0009460 Simmondsia chinensis HOM05D004703 ORTHO05D005801 2.2e-73 280.0 198 70.2
Zm00001eb378400 Zea mays HOM05D004703 ORTHO05D005801 1.7e-70 270.4 223 63.2
RcHm_v2.0_Chr0c37g0502981 Rosa chinensis HOM05D004703 ORTHO05D005801 4.4e-66 255.8 203 65.0
Sp6g05530 Schrenkiella parvula HOM05D004703 ORTHO05D005801 3.1e-64 249.6 170 71.8
RcHm_v2.0_Chr4g0403961 Rosa chinensis HOM05D004703 ORTHO05D005801 2.6e-63 246.5 170 71.2
arahy.Tifrunner.gnm1.ann1.HPWZ3I Arachis hypogaea HOM05D004703 ORTHO05D005801 3.8e-62 242.7 157 74.5
AagrBONN_evm.TU.Sc2ySwM_344.4389 Anthoceros agrestis HOM05D004703 ORTHO05D005801 2.1e-60 236.9 195 59.5
Haze_13993 Corylus avellana HOM05D004703 ORTHO05D005801 3.6e-60 236.1 168 72.0
MSTRG.25560 Avicennia marina HOM05D004703 ORTHO05D005801 1.8e-56 223.8 130 84.6
BcaB04g18565 Brassica carinata HOM05D004703 ORTHO05D005801 9.4e-53 211.5 170 65.3
BcaB02g09202 Brassica carinata HOM05D004703 ORTHO05D005801 1.0e-51 208.0 170 64.1
BcaB02g11533 Brassica carinata HOM05D004703 ORTHO05D005801 3.7e-49 199.5 227 51.1
ATR0905G001 Amborella trichopoda HOM05D004703 ORTHO05D005801 3.8e-46 189.5 122 73.0
arahy.Tifrunner.gnm1.ann1.U0A30G Arachis hypogaea HOM05D004703 ORTHO05D005801 3.2e-45 186.4 157 63.1
arahy.Tifrunner.gnm1.ann1.QD9SPH Arachis hypogaea HOM05D004703 ORTHO05D005801 5.5e-45 185.7 159 62.3
arahy.Tifrunner.gnm1.ann1.R8Q162 Arachis hypogaea HOM05D004703 ORTHO05D005801 5.5e-45 185.7 157 63.1
arahy.Tifrunner.gnm1.ann1.0W2QGA Arachis hypogaea HOM05D004703 ORTHO05D005801 2.1e-44 183.7 156 62.8
arahy.Tifrunner.gnm1.ann1.TN8QBF Arachis hypogaea HOM05D004703 ORTHO05D005801 2.7e-44 183.3 159 62.9
arahy.Tifrunner.gnm1.ann1.DGE7ZD Arachis hypogaea HOM05D004703 ORTHO05D005801 8.0e-44 181.8 173 57.8
arahy.Tifrunner.gnm1.ann1.KBZV3C Arachis hypogaea HOM05D004703 ORTHO05D005801 2.3e-43 180.3 162 60.5
arahy.Tifrunner.gnm1.ann1.7IH5G2 Arachis hypogaea HOM05D004703 ORTHO05D005801 1.5e-42 177.6 157 60.5
arahy.Tifrunner.gnm1.ann1.J3Q2MP Arachis hypogaea HOM05D004703 ORTHO05D005801 1.7e-41 174.1 159 58.5
BcaC01g04204 Brassica carinata HOM05D004703 ORTHO05D005801 1.6e-39 167.5 108 77.8
arahy.Tifrunner.gnm1.ann1.QT2LTC Arachis hypogaea HOM05D004703 ORTHO05D005801 2.9e-38 163.3 144 61.1
Zm00001eb279110 Zea mays HOM05D004703 ORTHO05D005801 1.9e-37 160.6 104 74.0
arahy.Tifrunner.gnm1.ann1.EX0EXI Arachis hypogaea HOM05D004703 ORTHO05D005801 7.2e-37 158.7 162 56.8
Zm00001eb113910 Zea mays HOM05D004703 ORTHO05D005801 1.0e-35 154.8 105 71.4
Cfa024731 Carpinus fangiana HOM05D004703 ORTHO05D005801 2.3e-35 153.7 228 42.5
RcHm_v2.0_Chr4g0425481 Rosa chinensis HOM05D004703 ORTHO05D005801 5.7e-34 149.1 157 54.8
arahy.Tifrunner.gnm1.ann1.UX21TB Arachis hypogaea HOM05D004703 ORTHO05D005801 3.7e-33 146.4 160 53.8
arahy.Tifrunner.gnm1.ann1.YD44XK Arachis hypogaea HOM05D004703 ORTHO05D005801 3.7e-33 146.4 160 53.8
arahy.Tifrunner.gnm1.ann1.WGQ9HG Arachis hypogaea HOM05D004703 ORTHO05D005801 6.3e-33 145.6 123 62.6
arahy.Tifrunner.gnm1.ann1.QV6CQV Arachis hypogaea HOM05D004703 ORTHO05D005801 8.3e-33 145.2 122 62.3
arahy.Tifrunner.gnm1.ann1.XKXY1P Arachis hypogaea HOM05D004703 ORTHO05D005801 7.0e-32 142.1 94 76.6
arahy.Tifrunner.gnm1.ann1.L680XF Arachis hypogaea HOM05D004703 ORTHO05D005801 1.6e-31 141.0 107 68.2
ATR0251G001 Amborella trichopoda HOM05D004703 ORTHO05D005801 3.3e-29 133.3 88 71.6
arahy.Tifrunner.gnm1.ann1.0PA3BU Arachis hypogaea HOM05D004703 ORTHO05D005801 1.5e-26 124.4 111 59.5
arahy.Tifrunner.gnm1.ann1.DQS0N1 Arachis hypogaea HOM05D004703 ORTHO05D005801 3.7e-25 119.8 139 51.8
vmacro19247 Vaccinium macrocarpon HOM05D004703 ORTHO05D005801 6.4e-25 119.0 73 78.1
arahy.Tifrunner.gnm1.ann1.IA6KQS Arachis hypogaea HOM05D004703 ORTHO05D005801 9.5e-21 105.1 70 75.7
arahy.Tifrunner.gnm1.ann1.5L4UK7 Arachis hypogaea HOM05D004703 ORTHO05D005801 3.6e-20 103.2 133 45.1
arahy.Tifrunner.gnm1.ann1.2KDH9Q Arachis hypogaea HOM05D004703 ORTHO05D005801 7.5e-18 95.5 103 50.5
arahy.Tifrunner.gnm1.ann1.N0B60F Arachis hypogaea HOM05D003718 ORTHO05D004402 8.3e-17 92.0 56 73.2
CSS0004055 Camellia sinensis var. sinensis HOM05D004703 ORTHO05D005801 1.9e-16 90.9 57 71.9
arahy.Tifrunner.gnm1.ann1.4J0L4L Arachis hypogaea HOM05D004703 ORTHO05D005801 3.2e-16 90.1 89 56.2
SalBow6G4210 Salvia bowleyana HOM05D004703 ORTHO05D005801 1.1e-11 75.1 118 42.4
arahy.Tifrunner.gnm1.ann1.RAR2PQ Arachis hypogaea HOM05D004703 ORTHO05D030873 9.2e-08 62.0 111 35.1
arahy.Tifrunner.gnm1.ann1.54H2MY Arachis hypogaea HOM05D001155 ORTHO05D015979 1.3e-06 58.2 43 62.8
arahy.Tifrunner.gnm1.ann1.5AIV52 Arachis hypogaea HOM05D001155 ORTHO05D001080 3.0e-06 57.0 49 57.1
Oeu044815.2 Olea europaea HOM05D002525 ORTHO05D002727 3.9e-06 56.6 34 73.5


User provided reference genes

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