Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen08g028050 Solanum pennellii HOM05D003683 ORTHO05D004143 1.2e-56 223.0 116 100.0
Solyc08g079690.4 Solanum lycopersicum HOM05D003683 ORTHO05D004143 2.2e-55 218.8 116 97.4
PGSC0003DMG400003921 Solanum tuberosum HOM05D003683 ORTHO05D004143 1.2e-53 213.0 116 95.7
CAN.G630.45 Capsicum annuum HOM05D003683 ORTHO05D004143 6.5e-47 190.7 116 89.7
Nitab4.5_0000439g0100 Nicotiana tabacum HOM05D003683 ORTHO05D004143 1.1e-25 120.2 103 67.0
Peaxi162Scf00102g01336 Petunia axillaris HOM05D003683 ORTHO05D004143 1.1e-25 120.2 103 72.8
Nitab4.5_0006122g0030 Nicotiana tabacum HOM05D003683 ORTHO05D004143 3.1e-25 118.6 102 65.7
CSS0019244 Camellia sinensis var. sinensis HOM05D003683 ORTHO05D004143 5.3e-25 117.9 102 64.7
Sopen08g003530 Solanum pennellii HOM05D003683 ORTHO05D004143 1.7e-23 112.8 102 65.7
PGSC0003DMG400012487 Solanum tuberosum HOM05D003683 ORTHO05D004143 3.8e-23 111.7 102 64.7
Dinv39058 Davidia involucrata HOM05D003683 ORTHO05D004143 5.0e-23 111.3 103 60.2
CSS0021060 Camellia sinensis var. sinensis HOM05D003683 ORTHO05D004143 8.0e-21 104.0 103 58.3
Oeu064712.1 Olea europaea HOM05D003683 ORTHO05D004143 2.6e-19 99.0 110 53.6
Gohir.A12G222400 Gossypium hirsutum HOM05D003683 ORTHO05D004143 9.7e-19 97.1 102 54.9
Oeu056803.1 Olea europaea HOM05D003683 ORTHO05D004143 1.3e-18 96.7 105 54.3
Haze_09035 Corylus avellana HOM05D003683 ORTHO05D004143 1.7e-18 96.3 87 60.9
GSVIVG01019925001 Vitis vinifera HOM05D003683 ORTHO05D004143 2.2e-18 95.9 102 55.9
Cfa012041 Carpinus fangiana HOM05D003683 ORTHO05D004143 2.8e-18 95.5 87 60.9
Dinv37740 Davidia involucrata HOM05D003683 ORTHO05D004143 3.7e-18 95.1 99 57.6
Gorai.008G241000 Gossypium raimondii HOM05D003683 ORTHO05D004143 3.7e-18 95.1 102 54.9
Gohir.A03G010200 Gossypium hirsutum HOM05D003683 ORTHO05D004143 4.8e-18 94.7 102 53.9
COL.COLO4_23839 Corchorus olitorius HOM05D003683 ORTHO05D004143 8.3e-18 94.0 103 56.3
Gohir.D03G159600 Gossypium hirsutum HOM05D003683 ORTHO05D004143 8.3e-18 94.0 102 53.9
Actinidia14483 Actinidia chinensis HOM05D003683 ORTHO05D004143 2.4e-17 92.4 102 53.9
Hma1.2p1_0138F.1_g062970 Hydrangea macrophylla HOM05D003683 ORTHO05D004143 2.4e-17 92.4 95 56.8
Gohir.D12G224900 Gossypium hirsutum HOM05D003683 ORTHO05D004143 5.3e-17 91.3 102 53.9
Gorai.003G167900 Gossypium raimondii HOM05D003683 ORTHO05D004143 5.3e-17 91.3 102 52.9
Eucgr.E00491 Eucalyptus grandis HOM05D003683 ORTHO05D004143 1.6e-16 89.7 94 53.2
Thecc.03G264300 Theobroma cacao HOM05D003683 ORTHO05D004143 1.6e-16 89.7 102 53.9
Atru.chr9.1472 Acer truncatum HOM05D003683 ORTHO05D004143 3.5e-16 88.6 76 60.5
Lj2A204T52 Lonicera japonica HOM05D003683 ORTHO05D004143 5.9e-16 87.8 96 58.3
Manes.02G031900 Manihot esculenta HOM05D003683 ORTHO05D004143 7.7e-16 87.4 102 52.9
DCAR_008443 Daucus carota HOM05D003683 ORTHO05D004143 1.0e-15 87.0 103 49.5
QL12p015617 Quercus lobata HOM05D003683 ORTHO05D004143 1.0e-15 87.0 102 53.9
CiPaw.12G102800 Carya illinoinensis HOM05D003683 ORTHO05D004143 1.3e-15 86.7 94 55.3
TAR375G1063 Trochodendron aralioides HOM05D003683 ORTHO05D004143 2.9e-15 85.5 106 50.0
TAR629G0669 Trochodendron aralioides HOM05D003683 ORTHO05D004143 3.8e-15 85.1 94 56.4
TAR629G3017 Trochodendron aralioides HOM05D003683 ORTHO05D004143 5.0e-15 84.7 94 56.4
Cc08_g13490 Coffea canephora HOM05D003683 ORTHO05D004143 6.5e-15 84.3 91 54.9
MSTRG.13795 Avicennia marina HOM05D003683 ORTHO05D004143 1.5e-14 83.2 101 52.5
CiPaw.11G145300 Carya illinoinensis HOM05D003683 ORTHO05D004143 1.9e-14 82.8 84 53.6
Dinv43725 Davidia involucrata HOM05D003683 ORTHO05D004143 5.5e-14 81.3 100 49.0
vmacro00217 Vaccinium macrocarpon HOM05D003683 ORTHO05D004143 5.5e-14 81.3 100 58.0
Manes.01G071300 Manihot esculenta HOM05D003683 ORTHO05D004143 1.2e-13 80.1 90 53.3
Sabra03G0081600 Salix brachista HOM05D003683 ORTHO05D004143 1.6e-13 79.7 81 53.1
Potri.014G071200 Populus trichocarpa HOM05D003683 ORTHO05D004143 6.1e-13 77.8 85 52.9
Rhsim11G0007500 Rhododendron simsii HOM05D003683 ORTHO05D004143 8.0e-13 77.4 97 56.7
Sed0004645 Sechium edule HOM05D003683 ORTHO05D004143 8.0e-13 77.4 99 47.5
Potri.003G117200 Populus trichocarpa HOM05D003683 ORTHO05D004143 1.0e-12 77.0 81 53.1
Sabra01G0087900 Salix brachista HOM05D003683 ORTHO05D004143 1.4e-12 76.6 101 46.5
Dinv32390 Davidia involucrata HOM05D003683 ORTHO05D004143 3.0e-12 75.5 100 47.0
FAN10G4272 Fragaria x ananassa HOM05D003683 ORTHO05D004143 4.0e-12 75.1 95 48.4
Cfa001703 Carpinus fangiana HOM05D003683 ORTHO05D004143 5.2e-12 74.7 101 48.5
FvH4_7g12070 Fragaria vesca HOM05D003683 ORTHO05D004143 5.2e-12 74.7 95 48.4
FAN06G0493 Fragaria x ananassa HOM05D003683 ORTHO05D004143 5.2e-12 74.7 95 48.4
FAN06G2934 Fragaria x ananassa HOM05D003683 ORTHO05D004143 5.2e-12 74.7 95 48.4
CsaV3_5G003580 Cucumis sativus L. HOM05D003683 ORTHO05D004143 6.8e-12 74.3 97 47.4
ClCG01G003480 Citrullus lanatus HOM05D003683 ORTHO05D004143 8.8e-12 73.9 97 50.5
Ciclev10023705m.g Citrus clementina HOM05D003683 ORTHO05D004143 1.2e-11 73.6 87 51.7
Potri.001G114900 Populus trichocarpa HOM05D003683 ORTHO05D004143 1.5e-11 73.2 102 45.1
PGR042G1830 Punica granatum HOM05D003683 ORTHO05D004143 2.0e-11 72.8 94 50.0
Hund14673 Selenicereus undatus HOM05D003683 ORTHO05D004143 2.0e-11 72.8 94 47.9
MELO3C005596.2 Cucumis melo HOM05D003683 ORTHO05D004143 2.6e-11 72.4 99 47.5
Potri.002G149600 Populus trichocarpa HOM05D003683 ORTHO05D004143 2.6e-11 72.4 87 51.7
Migut.E01009 Erythranthe guttata HOM05D003683 ORTHO05D004143 4.4e-11 71.6 97 48.5
Sed0005281 Sechium edule HOM05D003683 ORTHO05D004143 4.4e-11 71.6 91 48.4
Lsat_1_v5_gn_6_10220 Lactuca sativa HOM05D003683 ORTHO05D004143 5.7e-11 71.2 99 44.4
Nn4g26435 Nelumbo nucifera HOM05D003683 ORTHO05D004143 7.5e-11 70.9 94 47.9
Aqoxy7G00590 Aquilegia oxysepala HOM05D003683 ORTHO05D004143 9.8e-11 70.5 97 47.4
AUR62010534 Chenopodium quinoa HOM05D003683 ORTHO05D004143 1.3e-10 70.1 95 48.4
AUR62017361 Chenopodium quinoa HOM05D003683 ORTHO05D004143 1.7e-10 69.7 95 48.4
FAN01G1734 Fragaria x ananassa HOM05D003683 ORTHO05D004143 1.7e-10 69.7 95 46.3
Phvul.010G085600 Phaseolus vulgaris HOM05D003683 ORTHO05D004143 2.2e-10 69.3 56 60.7
CiPaw.01G260700 Carya illinoinensis HOM05D003683 ORTHO05D004143 2.8e-10 68.9 99 44.4
Glyma.03G022200 Glycine max HOM05D003683 ORTHO05D004143 2.8e-10 68.9 112 42.0
HanXRQChr09g0246651 Helianthus annuus HOM05D003683 ORTHO05D004143 2.8e-10 68.9 97 45.4
RcHm_v2.0_Chr1g0350821 Rosa chinensis HOM05D003683 ORTHO05D004143 2.8e-10 68.9 108 43.5
ClCG05G002130 Citrullus lanatus HOM05D003683 ORTHO05D004143 6.3e-10 67.8 77 46.8
EL10Ac5g12652 Beta vulgaris HOM05D003683 ORTHO05D004143 8.3e-10 67.4 93 47.3
ECA233G3941 Erigeron canadensis HOM05D003683 ORTHO05D004143 8.3e-10 67.4 84 48.8
FAN10G1839 Fragaria x ananassa HOM05D003683 ORTHO05D004143 8.3e-10 67.4 95 45.3
TWI60G0451 Tripterygium wilfordii HOM05D003683 ORTHO05D004143 1.1e-09 67.0 80 48.8
Prupe.2G147300 Prunus persica HOM05D003683 ORTHO05D004143 1.4e-09 66.6 101 42.6
Hund11555 Selenicereus undatus HOM05D003683 ORTHO05D004143 1.4e-09 66.6 77 51.9
Manes.01G264900 Manihot esculenta HOM05D003683 ORTHO05D004143 1.8e-09 66.2 99 44.4
Gohir.A11G081600 Gossypium hirsutum HOM05D003683 ORTHO05D004143 2.4e-09 65.9 85 48.2
Gorai.008G114600 Gossypium raimondii HOM05D003683 ORTHO05D004143 2.4e-09 65.9 98 42.9
Duzib133G0707 Durio zibethinus HOM05D003683 ORTHO05D004143 4.1e-09 65.1 84 50.0
BcaB02g08997 Brassica carinata HOM05D003683 ORTHO05D004143 5.4e-09 64.7 109 38.5
A05p05480 Brassica napus HOM05D003683 ORTHO05D004143 5.4e-09 64.7 111 40.5
BraA05t19518Z Brassica rapa HOM05D003683 ORTHO05D004143 5.4e-09 64.7 111 40.5
BcaC02g12206 Brassica carinata HOM05D003683 ORTHO05D004143 7.0e-09 64.3 111 40.5
C04p06420 Brassica napus HOM05D003683 ORTHO05D004143 7.0e-09 64.3 111 40.5
BolC4t22265H Brassica oleracea HOM05D003683 ORTHO05D004143 7.0e-09 64.3 111 40.5
Gohir.D11G086200 Gossypium hirsutum HOM05D003683 ORTHO05D004143 7.0e-09 64.3 85 47.1
Sed0003331 Sechium edule HOM05D003683 ORTHO05D004143 7.0e-09 64.3 86 46.5
BcaC01g05122 Brassica carinata HOM05D003683 ORTHO05D004143 9.1e-09 63.9 109 39.4
BcaC01g05135 Brassica carinata HOM05D003683 ORTHO05D004143 9.1e-09 63.9 109 39.4
MBI04_g32262_MAGBIO Magnolia biondii HOM05D003683 ORTHO05D004143 9.1e-09 63.9 103 42.7
SalBow6G6235 Salvia bowleyana HOM05D003683 ORTHO05D004143 1.2e-08 63.5 82 43.9
Thecc.01G374500 Theobroma cacao HOM05D003683 ORTHO05D004143 1.6e-08 63.2 101 46.5
Actinidia02072 Actinidia chinensis HOM05D003683 ORTHO05D004143 2.0e-08 62.8 86 45.3
C03p30100 Brassica napus HOM05D003683 ORTHO05D004143 2.0e-08 62.8 109 38.5
Duzib138G1197 Durio zibethinus HOM05D003683 ORTHO05D004143 2.0e-08 62.8 79 49.4
Thhalv10001694m.g Eutrema salsugineum HOM05D003683 ORTHO05D004143 2.0e-08 62.8 95 45.3
Glyma.01G144700 Glycine max HOM05D003683 ORTHO05D004143 2.0e-08 62.8 53 56.6
AL4G44620 Arabidopsis lyrata HOM05D003683 ORTHO05D004143 2.7e-08 62.4 95 48.4
Hma1.2p1_3528F.1_g336600 Hydrangea macrophylla HOM05D003683 ORTHO05D004143 2.7e-08 62.4 97 41.2
Sp4g27480 Schrenkiella parvula HOM05D003683 ORTHO05D004143 2.7e-08 62.4 93 43.0
A03p25230 Brassica napus HOM05D003683 ORTHO05D004143 3.5e-08 62.0 109 38.5
CiPaw.02G166400 Carya illinoinensis HOM05D003683 ORTHO05D004143 3.5e-08 62.0 101 42.6
CsaV3_3G009560 Cucumis sativus L. HOM05D003683 ORTHO05D004143 3.5e-08 62.0 79 45.6
MD07G1124000 Malus domestica HOM05D003683 ORTHO05D004143 3.5e-08 62.0 102 40.2
Cpa.g.sc29.63 Carica papaya HOM05D003683 ORTHO05D004143 5.9e-08 61.2 41 65.9
CARHR140640 Cardamine hirsuta HOM05D003683 ORTHO05D004143 7.7e-08 60.8 93 44.1
Gohir.A12G102100 Gossypium hirsutum HOM05D003683 ORTHO05D004143 7.7e-08 60.8 98 41.8
Lalb_Chr03g0039121 Lupinus albus HOM05D003683 ORTHO05D004143 7.7e-08 60.8 99 36.4
BcaB01g03267 Brassica carinata HOM05D003683 ORTHO05D004143 1.0e-07 60.5 109 37.6
Hma1.2p1_1793F.1_g302590 Hydrangea macrophylla HOM05D003683 ORTHO05D004143 1.3e-07 60.1 94 40.4
BcaB02g08986 Brassica carinata HOM05D003683 ORTHO05D004143 1.7e-07 59.7 95 44.2
MD02G1201500 Malus domestica HOM05D003683 ORTHO05D004143 1.7e-07 59.7 104 41.3
AT2G45450 Arabidopsis thaliana HOM05D003683 ORTHO05D004143 2.3e-07 59.3 93 43.0
Carub.0004s2806 Capsella rubella HOM05D003683 ORTHO05D004143 2.3e-07 59.3 86 46.5
Gohir.D12G105300 Gossypium hirsutum HOM05D003683 ORTHO05D004143 2.3e-07 59.3 99 40.4
Medtr7g075120 Medicago truncatula HOM05D003683 ORTHO05D004143 2.9e-07 58.9 93 43.0
MELO3C006178.2 Cucumis melo HOM05D003683 ORTHO05D004143 3.8e-07 58.5 82 45.1
TWI23G1078 Tripterygium wilfordii HOM05D003683 ORTHO05D004143 3.8e-07 58.5 88 44.3
ATR0810G009 Amborella trichopoda HOM05D003683 ORTHO05D004143 5.0e-07 58.2 77 44.2
COL.COLO4_12571 Corchorus olitorius HOM05D003683 ORTHO05D004143 5.0e-07 58.2 89 42.7
Lj3g0025203 Lotus japonicus HOM05D003683 ORTHO05D004143 5.0e-07 58.2 57 54.4
Sabra02G0118400 Salix brachista HOM05D003683 ORTHO05D004143 5.0e-07 58.2 88 44.3
Peaxi162Scf00021g00139 Petunia axillaris HOM05D003683 ORTHO05D004143 6.6e-07 57.8 102 41.2
Glyma.18G221800 Glycine max HOM05D003683 ORTHO05D004143 8.6e-07 57.4 64 51.6
THA.LOC104814010 Tarenaya hassleriana HOM05D003683 ORTHO05D004143 8.6e-07 57.4 76 47.4
GSVIVG01027629001 Vitis vinifera HOM05D003683 ORTHO05D004143 8.6e-07 57.4 106 40.6
A04p01350 Brassica napus HOM05D003683 ORTHO05D004143 1.1e-06 57.0 86 40.7
CDE02G3545 Ceratophyllum demersum HOM05D003683 ORTHO05D004143 1.1e-06 57.0 47 66.0
BcaB06g29422 Brassica carinata HOM05D003683 ORTHO05D004143 1.5e-06 56.6 93 40.9
A04p33850 Brassica napus HOM05D003683 ORTHO05D004143 1.5e-06 56.6 95 42.1
BraA04t18845Z Brassica rapa HOM05D003683 ORTHO05D004143 1.5e-06 56.6 95 42.1
BcaC02g07091 Brassica carinata HOM05D003683 ORTHO05D004143 2.5e-06 55.8 93 38.7
C04p71580 Brassica napus HOM05D003683 ORTHO05D004143 2.5e-06 55.8 93 38.7
BolC4t28663H Brassica oleracea HOM05D003683 ORTHO05D004143 2.5e-06 55.8 93 38.7
Lsat_1_v5_gn_4_37980 Lactuca sativa HOM05D003683 ORTHO05D004143 2.5e-06 55.8 102 37.3
Manes.05G044050 Manihot esculenta HOM05D003683 ORTHO05D004143 3.3e-06 55.5 56 53.6
PGR031G2056 Punica granatum HOM05D003683 ORTHO05D004143 3.3e-06 55.5 66 43.9
Os09g0520500 Oryza sativa ssp. japonica HOM05D003683 ORTHO05D004143 4.2e-06 55.1 47 66.0
Aa31LG1G26950 Aethionema arabicum HOM05D003683 ORTHO05D004143 5.5e-06 54.7 113 39.8


User provided reference genes

Program Settings