Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen08g028040 Solanum pennellii HOM05D005851 ORTHO05D007137 8.9e-99 363.6 185 100.0
Solyc08g079680.3 Solanum lycopersicum HOM05D005851 ORTHO05D007137 5.4e-96 354.4 185 97.8
PGSC0003DMG400003949 Solanum tuberosum HOM05D005851 ORTHO05D007137 7.1e-96 354.0 185 97.3
Peaxi162Scf00620g00019 Petunia axillaris HOM05D005851 ORTHO05D007137 3.0e-78 295.4 194 81.4
Nitab4.5_0006122g0020 Nicotiana tabacum HOM05D005851 ORTHO05D007137 3.9e-78 295.0 194 80.9
Nitab4.5_0000439g0090 Nicotiana tabacum HOM05D005851 ORTHO05D007137 1.1e-75 287.0 194 79.4
Nitab4.5_0001265g0130 Nicotiana tabacum HOM05D005851 ORTHO05D007137 4.0e-67 258.5 195 71.8
Nitab4.5_0001816g0070 Nicotiana tabacum HOM05D005851 ORTHO05D007137 6.9e-67 257.7 194 71.1
Solyc08g007580.4 Solanum lycopersicum HOM05D005851 ORTHO05D007137 3.0e-62 242.3 193 66.8
PGSC0003DMG400012515 Solanum tuberosum HOM05D005851 ORTHO05D007137 3.9e-62 241.9 193 67.4
CAN.G630.46 Capsicum annuum HOM05D005851 ORTHO05D007137 1.1e-59 233.8 123 92.7
Sc01g0009080 Simmondsia chinensis HOM05D005851 ORTHO05D007137 1.2e-55 220.3 137 78.1
Actinidia14484 Actinidia chinensis HOM05D005851 ORTHO05D007137 3.5e-55 218.8 145 75.9
CAN.G1394.24 Capsicum annuum HOM05D005851 ORTHO05D007137 4.6e-55 218.4 141 75.2
Hma1.2p1_0367F.1_g137205 Hydrangea macrophylla HOM05D005851 ORTHO05D007137 1.0e-54 217.2 140 75.7
vmacro00216 Vaccinium macrocarpon HOM05D005851 ORTHO05D007137 3.9e-54 215.3 185 63.2
Oeu064711.1 Olea europaea HOM05D005851 ORTHO05D007137 1.9e-53 213.0 189 61.4
Atru.chr9.1473 Acer truncatum HOM05D005851 ORTHO05D007137 2.5e-53 212.6 183 61.7
TAR629G1703 Trochodendron aralioides HOM05D005851 ORTHO05D007137 2.5e-53 212.6 139 74.1
FAN13G0774 Fragaria x ananassa HOM05D005851 ORTHO05D007137 4.3e-53 211.8 184 60.9
Cc08_g13500 Coffea canephora HOM05D005851 ORTHO05D007137 7.4e-53 211.1 189 61.4
CsaV3_3G003320 Cucumis sativus L. HOM05D005851 ORTHO05D007137 7.4e-53 211.1 177 65.5
CSS0019536 Camellia sinensis var. sinensis HOM05D005851 ORTHO05D007137 9.6e-53 210.7 179 64.8
Duzib205G1229 Durio zibethinus HOM05D005851 ORTHO05D007137 9.6e-53 210.7 179 62.6
FvH4_5g00940 Fragaria vesca HOM05D005851 ORTHO05D007137 9.6e-53 210.7 182 61.0
HanXRQChr09g0246661 Helianthus annuus HOM05D005851 ORTHO05D007137 9.6e-53 210.7 147 72.1
Rhsim05G0172500 Rhododendron simsii HOM05D005851 ORTHO05D007137 3.7e-52 208.8 158 67.1
QL12p015621 Quercus lobata HOM05D005851 ORTHO05D007137 4.8e-52 208.4 191 58.6
Gorai.008G241100 Gossypium raimondii HOM05D005851 ORTHO05D007137 8.2e-52 207.6 186 65.1
RcHm_v2.0_Chr7g0200451 Rosa chinensis HOM05D005851 ORTHO05D007137 8.2e-52 207.6 184 62.0
FAN04G1422 Fragaria x ananassa HOM05D005851 ORTHO05D007137 1.1e-51 207.2 184 59.8
GSVIVG01019923001 Vitis vinifera HOM05D005851 ORTHO05D007137 1.8e-51 206.5 129 76.7
ECA233G5981 Erigeron canadensis HOM05D005851 ORTHO05D007137 2.4e-51 206.1 138 73.9
Cpa.g.sc29.62 Carica papaya HOM05D005851 ORTHO05D007137 4.1e-51 205.3 184 59.2
MD06G1068000 Malus domestica HOM05D005851 ORTHO05D007137 4.1e-51 205.3 186 62.9
Gohir.D12G225000 Gossypium hirsutum HOM05D005851 ORTHO05D007137 9.0e-51 204.1 182 63.7
AUR62010535 Chenopodium quinoa HOM05D005851 ORTHO05D007137 1.2e-50 203.8 189 57.1
AUR62017360 Chenopodium quinoa HOM05D005851 ORTHO05D007137 1.5e-50 203.4 189 56.1
MELO3C013999.2 Cucumis melo HOM05D005851 ORTHO05D007137 2.0e-50 203.0 191 60.7
Gohir.A12G222500 Gossypium hirsutum HOM05D005851 ORTHO05D007137 2.6e-50 202.6 182 63.2
PGR042G2385 Punica granatum HOM05D005851 ORTHO05D007137 2.6e-50 202.6 140 71.4
Sabra01G0087800 Salix brachista HOM05D005851 ORTHO05D007137 2.6e-50 202.6 134 74.6
SGA_v2.0_scaffold144G35989 Striga asiatica HOM05D005851 ORTHO05D007137 3.4e-50 202.2 161 65.2
Potri.001G114800 Populus trichocarpa HOM05D005851 ORTHO05D007137 5.9e-50 201.4 133 74.4
Sopen08g003540 Solanum pennellii HOM05D005851 ORTHO05D007137 7.6e-50 201.1 122 82.0
EL10Ac5g12653 Beta vulgaris HOM05D005851 ORTHO05D007137 6.5e-49 198.0 146 71.2
TWI60G0484 Tripterygium wilfordii HOM05D005851 ORTHO05D007137 6.5e-49 198.0 139 70.5
CDE04G1030 Ceratophyllum demersum HOM05D005851 ORTHO05D007137 1.1e-48 197.2 152 65.1
MBI12_g34479_MAGBIO Magnolia biondii HOM05D005851 ORTHO05D007137 1.4e-48 196.8 155 67.1
Lj2g0003035 Lotus japonicus HOM05D005851 ORTHO05D007137 1.2e-47 193.7 103 84.5
Glyma.01G213300 Glycine max HOM05D005851 ORTHO05D007137 1.6e-47 193.4 102 85.3
Psat2g180400 Pisum sativum HOM05D005851 ORTHO05D007137 1.6e-47 193.4 103 84.5
Medtr5g011460 Medicago truncatula HOM05D005851 ORTHO05D007137 4.6e-47 191.8 103 83.5
Aa31LG6G4910 Aethionema arabicum HOM05D000943 ORTHO05D002475 7.9e-47 191.0 138 71.0
AT4G22830 Arabidopsis thaliana HOM05D005851 ORTHO05D007137 1.3e-46 190.3 151 63.6
SalBow1G3546 Salvia bowleyana HOM05D005851 ORTHO05D007137 1.3e-46 190.3 144 64.6
TPR.G19565 Trifolium pratense HOM05D005851 ORTHO05D007137 1.3e-46 190.3 164 59.8
MSTRG.1924 Avicennia marina HOM05D005851 ORTHO05D007137 2.3e-46 189.5 159 61.6
Thhalv10026321m.g Eutrema salsugineum HOM05D005851 ORTHO05D007137 3.0e-46 189.1 177 55.4
arahy.Tifrunner.gnm1.ann1.KEJN3W Arachis hypogaea HOM05D005851 ORTHO05D007137 3.9e-46 188.7 143 64.3
arahy.Tifrunner.gnm1.ann1.BUTP6K Arachis hypogaea HOM05D005851 ORTHO05D007137 6.7e-46 188.0 143 64.3
A01p14080 Brassica napus HOM05D005851 ORTHO05D007137 8.7e-46 187.6 127 70.9
BolC1t01669H Brassica oleracea HOM05D005851 ORTHO05D007137 8.7e-46 187.6 128 70.3
BraA01t01356Z Brassica rapa HOM05D005851 ORTHO05D007137 8.7e-46 187.6 127 70.9
THA.LOC104814025 Tarenaya hassleriana HOM05D005851 ORTHO05D007137 8.7e-46 187.6 131 69.5
Ciclev10024430m.g Citrus clementina HOM05D005851 ORTHO05D007137 1.1e-45 187.2 132 70.5
CARHR229860 Cardamine hirsuta HOM05D005851 ORTHO05D007137 1.9e-45 186.4 183 54.1
BcaC09g51070 Brassica carinata HOM05D005851 ORTHO05D007137 2.5e-45 186.0 128 69.5
BcaC09g51071 Brassica carinata HOM05D005851 ORTHO05D007137 2.5e-45 186.0 128 69.5
C01p17300 Brassica napus HOM05D005851 ORTHO05D007137 2.5e-45 186.0 128 69.5
HPP92_025677 Vanilla planifolia HOM05D005851 ORTHO05D007137 2.5e-45 186.0 180 55.0
BcaNung01022 Brassica carinata HOM05D005851 ORTHO05D007137 4.3e-45 185.3 128 70.3
CiPaw.11G145200 Carya illinoinensis HOM05D005851 ORTHO05D007137 7.4e-45 184.5 140 63.6
ATR0810G218 Amborella trichopoda HOM05D005851 ORTHO05D007137 1.3e-44 183.7 135 68.1
AL7G30690 Arabidopsis lyrata HOM05D005851 ORTHO05D007137 1.6e-44 183.3 154 59.7
Phvul.002G151800 Phaseolus vulgaris HOM05D005851 ORTHO05D007137 1.6e-44 183.3 147 62.6
Os04g0379400 Oryza sativa ssp. japonica HOM05D005851 ORTHO05D007137 3.7e-44 182.2 137 67.2
Carub.0007s1844 Capsella rubella HOM05D005851 ORTHO05D007137 4.8e-44 181.8 126 70.6
Pp3c12_9510 Physcomitrium patens HOM05D005851 ORTHO05D007137 6.3e-44 181.4 186 52.7
Lalb_Chr16g0379871 Lupinus albus HOM05D005851 ORTHO05D007137 1.4e-43 180.3 94 85.1
Zm00001eb103020 Zea mays HOM05D005851 ORTHO05D007137 3.1e-43 179.1 101 79.2
Pp3c10_11850 Physcomitrium patens HOM05D005851 ORTHO05D007137 4.1e-43 178.7 139 64.7
FAN08G3582 Fragaria x ananassa HOM05D005851 ORTHO05D007137 2.6e-42 176.0 186 53.8
Sed0022049 Sechium edule HOM05D005851 ORTHO05D007137 1.9e-40 169.9 111 72.1
CANSAT95G0001 Cannabis sativa HOM05D005851 ORTHO05D007137 2.5e-40 169.5 142 65.5
Ah.02g116130 Amaranthus hybridus HOM05D005851 ORTHO05D007137 2.7e-39 166.0 104 76.9
Glyma.11G028600 Glycine max HOM05D005851 ORTHO05D007137 2.7e-39 166.0 152 58.6
Mapoly0066s0013 Marchantia polymorpha HOM05D005851 ORTHO05D007137 3.6e-39 165.6 101 72.3
SMO364G0744 Selaginella moellendorffii HOM05D005851 ORTHO05D007137 6.1e-39 164.9 97 75.3
Migut.E01010 Erythranthe guttata HOM05D005851 ORTHO05D007137 8.8e-38 161.0 132 63.6
Manes.02G031801 Manihot esculenta HOM05D005851 ORTHO05D007137 8.8e-38 161.0 122 65.6
DCAR_000876 Daucus carota HOM05D005851 ORTHO05D007137 2.0e-37 159.8 157 59.2
Cre12.g555400 Chlamydomonas reinhardtii HOM05D005851 ORTHO05D007137 4.1e-35 152.1 152 52.6
Nn1g01189 Nelumbo nucifera HOM05D005851 ORTHO05D007137 1.2e-34 150.6 137 62.8
COL.COLO4_23838 Corchorus olitorius HOM05D005851 ORTHO05D007137 3.4e-34 149.1 77 90.9
SEGI_29987 Sequoiadendron giganteum HOM05D005851 ORTHO05D007137 1.9e-32 143.3 72 86.1
FAN18G0436 Fragaria x ananassa HOM05D005851 ORTHO05D007137 2.5e-32 142.9 182 47.8
VMungo1215G2211 Vigna mungo HOM05D005851 ORTHO05D007137 1.2e-31 140.6 76 81.6
MCO03G553 Micromonas commoda HOM05D005851 ORTHO05D007137 2.6e-29 132.9 103 57.3
Thecc.03G264400 Theobroma cacao HOM05D005851 ORTHO05D007137 4.4e-29 132.1 141 51.8
PRCOL_00005435 Prasinoderma coloniale HOM05D005851 ORTHO05D007137 3.7e-28 129.0 147 44.2
PRCOL_00002729 Prasinoderma coloniale HOM05D005851 ORTHO05D007137 7.0e-27 124.8 154 46.1
MCO14G091 Micromonas commoda HOM05D005851 ORTHO05D007137 6.5e-25 118.2 130 44.6
Hund14676 Selenicereus undatus HOM05D005851 ORTHO05D007137 6.5e-25 118.2 88 64.8
MCO14G294 Micromonas commoda HOM05D005851 ORTHO05D007137 9.4e-24 114.4 93 54.8
ClCG00G000050 Citrullus lanatus HOM05D005851 ORTHO05D007137 3.6e-23 112.5 86 69.8
ClCG00G004660 Citrullus lanatus HOM05D005851 ORTHO05D007137 3.6e-23 112.5 86 69.8
ClCG00G005270 Citrullus lanatus HOM05D005851 ORTHO05D007137 3.6e-23 112.5 86 69.8
ClCG10G003300 Citrullus lanatus HOM05D005851 ORTHO05D007137 3.6e-23 112.5 86 69.8
Eucgr.E00492 Eucalyptus grandis HOM05D005851 ORTHO05D007137 1.0e-22 110.9 73 69.9
Lsat_1_v5_gn_6_10241 Lactuca sativa HOM05D005851 ORTHO05D007137 2.3e-22 109.8 84 69.0
MD04G1076900 Malus domestica HOM05D005851 ORTHO05D007137 8.8e-22 107.8 55 90.9
Dinv39057 Davidia involucrata HOM05D005851 ORTHO05D007137 2.8e-20 102.8 51 92.2
Lj2A204T50 Lonicera japonica HOM05D005851 ORTHO05D007137 8.2e-20 101.3 49 87.8
PSO782G0540 Papaver somniferum HOM05D005851 ORTHO05D007137 8.2e-20 101.3 144 47.2
Ca_06681_v3 Cicer arietinum L. HOM05D000943 ORTHO05D002475 4.1e-19 99.0 90 53.3
unitig_699.g19746 Utricularia gibba HOM05D002021 ORTHO05D002077 2.0e-18 96.7 80 62.5
Nn4g26436 Nelumbo nucifera HOM05D005851 ORTHO05D007137 1.3e-17 94.0 52 82.7
PRCOL_00002728 Prasinoderma coloniale HOM05D005851 ORTHO05D049091 3.0e-14 82.8 134 38.1
CBR_g50783 Chara braunii HOM05D000019 ORTHO05D000002 7.5e-13 78.2 49 65.3
COL.COLO4_23837 Corchorus olitorius HOM05D005851 ORTHO05D007137 1.2e-10 70.9 109 45.0
BolC3t15330H Brassica oleracea HOM05D005851 ORTHO05D007137 1.6e-10 70.5 41 75.6
Dinv39056 Davidia involucrata HOM05D005851 ORTHO05D007137 1.3e-09 67.4 109 46.8
Lj2C204G6 Lonicera japonica HOM05D005851 ORTHO05D007137 3.8e-09 65.9 93 47.3
Aqoxy5G03942 Aquilegia oxysepala HOM05D001344 ORTHO05D002590 9.5e-08 61.2 63 52.4
Aa31LG6G4700 Aethionema arabicum HOM05D000943 ORTHO05D002475 8.0e-07 58.2 40 72.5
BcaC09g48268 Brassica carinata HOM05D002423 ORTHO05D007137 1.0e-06 57.8 67 49.3
C01p52310 Brassica napus HOM05D002423 ORTHO05D007137 1.0e-06 57.8 67 49.3
arahy.Tifrunner.gnm1.ann1.UAJL6I Arachis hypogaea HOM05D005851 ORTHO05D007137 5.2e-06 55.5 84 41.7
Nitab4.5_0001884g0030 Nicotiana tabacum HOM05D005851 ORTHO05D007137 8.8e-06 54.7 89 44.9


User provided reference genes

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